Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 0.0e+00 3271.1 1653 100.0
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1401.0 1863 46.4
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1379.0 1916 45.4
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1340.1 1951 43.7
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1296.2 1892 42.9
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1287.7 1906 43.5
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1266.1 1945 41.8
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1130.9 1619 42.6
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1125.9 1967 39.3
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1125.9 1967 39.3
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1125.5 1967 39.1
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 1123.6 1970 39.5
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1107.4 1869 39.6
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1106.3 1962 38.6
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1100.5 1975 38.4
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1100.5 1977 38.7
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1097.4 1961 38.2
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1096.6 1552 43.0
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1087.0 1960 37.7
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1085.9 1949 38.1
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1084.3 1987 38.0
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1083.2 2001 37.6
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 1.1e-311 1073.5 1996 38.1
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 2.3e-311 1073.2 1919 38.4
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 6.6e-310 1068.1 1967 38.0
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 4.2e-309 1065.4 1809 39.0
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 7.2e-309 1064.7 1937 38.2
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 3.6e-308 1062.4 1907 38.3
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 4.7e-308 1062.0 1978 38.0
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 1.4e-307 1060.4 1858 38.4
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 3.0e-307 1059.3 1541 42.3
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 1.3e-305 1053.9 1955 37.3
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 1.7e-305 1053.5 1834 38.0
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 6.3e-305 1051.6 1968 37.8
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 7.0e-304 1048.1 2119 36.3
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 2.0e-303 1046.6 1835 39.2
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 5.9e-303 1045.0 1914 37.7
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 6.6e-302 1041.6 1536 41.7
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 4.3e-301 1038.9 1926 37.4
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 1.6e-300 1036.9 1925 37.6
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 2.1e-300 1036.6 1863 38.0
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 3.6e-300 1035.8 1976 36.6
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.8e-299 1033.5 1925 37.5
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 2.6e-298 1029.6 1981 37.3
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 1.3e-297 1027.3 1841 38.3
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 1.7e-297 1026.9 1961 36.9
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 8.3e-297 1024.6 1946 37.9
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 7.0e-296 1021.5 1902 37.4
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 1.6e-295 1020.4 1917 37.6
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 3.5e-295 1019.2 1960 37.1
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 7.8e-295 1018.1 1476 44.0
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 1.3e-294 1017.3 1984 36.8
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 1.1e-293 1014.2 1851 37.8
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 4.3e-293 1012.3 1846 38.0
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 9.5e-293 1011.1 1872 37.6
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 1.6e-292 1010.4 1867 37.2
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 2.8e-292 1009.6 1891 37.2
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 8.0e-292 1008.1 1956 36.7
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.8e-291 1006.9 1851 38.0
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 8.9e-291 1004.6 1977 35.8
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 5.8e-290 1001.9 1956 36.9
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 2.9e-289 999.6 1858 37.0
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 1.4e-288 997.3 1807 38.1
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 1.4e-288 997.3 1807 38.1
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.9e-288 996.9 1959 36.8
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 1.7e-286 990.3 1760 38.5
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 1.2e-284 984.2 1929 36.2
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 4.7e-284 982.2 2054 36.0
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 6.2e-284 981.9 1959 37.0
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 3.4e-282 976.1 1942 37.2
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 2.2e-281 973.4 1953 36.3
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 6.4e-281 971.8 1845 36.1
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 8.3e-281 971.5 1856 36.0
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 1.1e-280 971.1 1866 35.6
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 1.4e-280 970.7 1879 37.0
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 1.9e-280 970.3 1951 35.0
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 3.2e-280 969.5 1879 35.8
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 5.4e-280 968.8 1888 36.0
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 7.1e-280 968.4 1973 36.5
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 7.8e-279 964.9 1990 35.1
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 7.8e-279 964.9 1890 36.5
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 1.1e-277 961.1 1977 34.7
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 1.2e-276 957.6 1958 34.8
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 3.6e-276 956.1 1896 35.8
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 6.8e-275 951.8 1675 37.7
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 1.5e-274 950.7 1988 35.0
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 3.4e-274 949.5 1959 35.7
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 3.8e-273 946.0 1963 34.7
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 1.1e-272 944.5 2036 35.4
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 2.4e-272 943.3 1956 35.4
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 4.1e-272 942.6 1919 36.5
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 1.0e-270 937.9 1977 35.1
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 2.2e-265 920.2 1883 35.3
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 5.1e-262 909.1 1857 35.7
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 9.6e-261 904.8 2082 33.5
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 1.0e-254 884.8 1131 45.5
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 1.8e-254 884.0 1474 38.5
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 7.4e-245 852.0 1865 33.6
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 3.8e-241 839.7 1292 40.9
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.1e-221 775.0 1478 36.7
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 8.2e-212 742.3 1133 42.5
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 3.2e-208 730.3 1240 38.5
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 3.3e-176 624.0 1176 37.3
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 1.1e-171 609.0 1750 29.8
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.6e-170 605.1 1139 34.9
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 2.5e-168 597.8 914 42.3
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.4e-165 587.0 1115 35.4
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 4.6e-162 577.0 1073 38.3
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 8.1e-159 566.2 1469 31.7
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 8.4e-156 556.2 1844 28.1
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 2.7e-154 551.2 1125 35.7
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.2e-149 535.8 1160 32.2
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 5.8e-125 453.8 840 37.6
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 1.3e-119 436.0 924 34.4
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.2e-114 419.5 912 32.9
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 2.0e-104 385.6 1015 29.3
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 6.5e-100 370.5 851 33.4
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.7e-71 276.2 608 36.7
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 1.6e-69 269.6 327 48.3
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.7e-63 249.6 257 48.2
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 1.4e-57 229.9 262 46.2
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 3.5e-53 215.3 254 47.6
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 8.6e-52 210.7 323 41.8
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 7.1e-46 191.0 257 45.1
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 7.1e-38 164.5 169 50.3
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 7.8e-37 161.0 363 29.5
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 5.1e-36 158.3 252 36.5
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 8.7e-36 157.5 258 37.2
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.1e-33 149.1 315 36.2
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.2e-32 147.1 453 31.1
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 9.9e-32 144.1 511 27.8
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 5.4e-30 138.3 276 37.0
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 3.6e-26 125.6 186 40.9
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 9.0e-25 120.9 355 29.0
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 9.9e-24 117.5 668 25.1
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.7e-23 116.7 187 34.2
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.4e-22 113.6 815 21.1
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 2.8e-18 99.4 215 33.0
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.5e-16 93.6 80 52.5
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 3.4e-16 92.4 409 23.0
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 2.9e-15 89.4 115 44.3
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 2.5e-14 86.3 98 42.9
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.2e-13 84.0 106 39.6
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 1.3e-12 80.5 88 47.7
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 5.1e-12 78.6 156 34.0
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 2.8e-10 72.8 93 40.9
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.5e-08 67.0 56 53.6
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 3.8e-07 62.4 167 29.9
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 1.9e-06 60.1 150 28.7
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 7.2e-06 58.2 98 35.7


User provided reference genes

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