Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_699.g19718 Utricularia gibba HOM05D004718 ORTHO05D005838 3.8e-75 284.6 133 100.0
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 1.8e-53 212.6 125 78.4
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 1.7e-51 206.1 125 75.2
Cc07_g17410 Coffea canephora HOM05D004718 ORTHO05D005838 4.2e-50 201.4 125 73.6
Nitab4.5_0000964g0050 Nicotiana tabacum HOM05D004718 ORTHO05D005838 1.6e-49 199.5 125 72.8
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 3.6e-49 198.4 125 69.6
Nitab4.5_0000004g0240 Nicotiana tabacum HOM05D004718 ORTHO05D005838 4.7e-49 198.0 125 72.0
SGA_v2.0_scaffold76G25169 Striga asiatica HOM05D004718 ORTHO05D005838 7.9e-49 197.2 125 75.2
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 1.0e-48 196.8 125 69.6
Actinidia03322 Actinidia chinensis HOM05D004718 ORTHO05D005838 1.4e-48 196.4 121 75.2
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 1.4e-48 196.4 125 72.0
Oeu047653.1 Olea europaea HOM05D004718 ORTHO05D005838 2.3e-48 195.7 125 73.6
CSS0012298 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 5.1e-48 194.5 125 72.8
CSS0022336 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 5.1e-48 194.5 125 72.8
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 1.1e-47 193.4 125 69.6
PGSC0003DMG401018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 2.0e-47 192.6 125 68.8
Cpa.g.sc42.63 Carica papaya HOM05D004718 ORTHO05D005838 7.4e-47 190.7 121 71.9
Prupe.1G462800 Prunus persica HOM05D004718 ORTHO05D005838 2.8e-46 188.7 121 74.4
Hma1.2p1_0147F.1_g065850 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 3.7e-46 188.3 123 70.7
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 4.8e-46 188.0 121 71.9
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 8.2e-46 187.2 126 73.0
Thhalv10010085m.g Eutrema salsugineum HOM05D004718 ORTHO05D005838 2.4e-45 185.7 121 70.2
QL12p024639 Quercus lobata HOM05D004718 ORTHO05D005838 2.4e-45 185.7 121 71.1
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 4.1e-45 184.9 121 68.6
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 5.3e-45 184.5 121 69.4
MD15G1110500 Malus domestica HOM05D004718 ORTHO05D005838 5.3e-45 184.5 121 72.7
CsaV3_2G031540 Cucumis sativus L. HOM05D004718 ORTHO05D005838 9.1e-45 183.7 121 68.6
Sed0007031 Sechium edule HOM05D004718 ORTHO05D005838 9.1e-45 183.7 121 71.9
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 1.2e-44 183.3 121 69.4
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 1.2e-44 183.3 121 70.2
MD08G1133600 Malus domestica HOM05D004718 ORTHO05D005838 1.5e-44 183.0 121 71.9
CARHR158620 Cardamine hirsuta HOM05D004718 ORTHO05D005838 2.0e-44 182.6 121 69.4
TAR624G0199 Trochodendron aralioides HOM05D004718 ORTHO05D005838 2.6e-44 182.2 121 71.9
Lsat_1_v5_gn_5_59280 Lactuca sativa HOM05D004718 ORTHO05D005838 3.5e-44 181.8 121 71.1
Rhsim04G0220700 Rhododendron simsii HOM05D004718 ORTHO05D005838 7.7e-44 180.6 120 70.8
arahy.Tifrunner.gnm1.ann1.7TNR6F Arachis hypogaea HOM05D004718 ORTHO05D005838 1.0e-43 180.3 121 68.6
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 1.0e-43 180.3 121 67.8
arahy.Tifrunner.gnm1.ann1.N8XBBJ Arachis hypogaea HOM05D004718 ORTHO05D005838 1.3e-43 179.9 121 68.6
Sp5g12510 Schrenkiella parvula HOM05D004718 ORTHO05D005838 1.3e-43 179.9 121 65.3
Potri.002G081600 Populus trichocarpa HOM05D004718 ORTHO05D005838 1.7e-43 179.5 120 69.2
HanXRQChr03g0082331 Helianthus annuus HOM05D004718 ORTHO05D005838 2.2e-43 179.1 122 69.7
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 2.2e-43 179.1 121 69.4
Psat5g025880 Pisum sativum HOM05D004718 ORTHO05D005838 2.2e-43 179.1 121 67.8
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 2.2e-43 179.1 120 68.3
AT3G49600 Arabidopsis thaliana HOM05D004718 ORTHO05D005838 2.9e-43 178.7 121 69.4
FvH4_2g30650 Fragaria vesca HOM05D004718 ORTHO05D005838 2.9e-43 178.7 121 69.4
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 2.9e-43 178.7 121 69.4
FAN27G1892 Fragaria x ananassa HOM05D004718 ORTHO05D005838 2.9e-43 178.7 121 69.4
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 3.8e-43 178.3 121 71.1
Atru.chr12.843 Acer truncatum HOM05D004718 ORTHO05D005838 5.0e-43 177.9 121 70.2
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 5.0e-43 177.9 121 67.8
BcaC07g39424 Brassica carinata HOM05D004718 ORTHO05D005838 5.0e-43 177.9 121 67.8
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 5.0e-43 177.9 121 67.8
C08p24600 Brassica napus HOM05D004718 ORTHO05D005838 5.0e-43 177.9 121 67.8
BolC8t50076H Brassica oleracea HOM05D004718 ORTHO05D005838 5.0e-43 177.9 121 67.8
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 5.0e-43 177.9 121 67.8
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 5.0e-43 177.9 121 70.2
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 6.5e-43 177.6 121 69.4
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 8.5e-43 177.2 123 69.9
Lalb_Chr08g0243651 Lupinus albus HOM05D004718 ORTHO05D005838 1.1e-42 176.8 121 67.8
PGR142G1098 Punica granatum HOM05D004718 ORTHO05D005838 1.1e-42 176.8 121 68.6
THA.LOC104799000 Tarenaya hassleriana HOM05D004718 ORTHO05D005838 1.1e-42 176.8 121 67.8
Haze_21689 Corylus avellana HOM05D004718 ORTHO05D005838 1.4e-42 176.4 121 69.4
Lj5g0017014 Lotus japonicus HOM05D004718 ORTHO05D005838 1.4e-42 176.4 121 67.8
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 1.4e-42 176.4 121 68.6
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 1.9e-42 176.0 121 68.6
Gohir.A13G181900 Gossypium hirsutum HOM05D004718 ORTHO05D005838 2.5e-42 175.6 121 68.6
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 2.5e-42 175.6 121 68.6
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 3.2e-42 175.3 121 67.8
AL5G29440 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 4.2e-42 174.9 121 67.8
Glyma.04G074300 Glycine max HOM05D004718 ORTHO05D005838 4.2e-42 174.9 121 66.9
Medtr3g108660 Medicago truncatula HOM05D004718 ORTHO05D005838 4.2e-42 174.9 121 66.1
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 1.2e-41 173.3 122 68.0
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 1.6e-41 172.9 121 67.8
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 2.7e-41 172.2 121 66.9
Glyma.06G075500 Glycine max HOM05D004718 ORTHO05D005838 3.6e-41 171.8 121 66.1
Sabra02G0063900 Salix brachista HOM05D004718 ORTHO05D005838 3.6e-41 171.8 120 68.3
Glyma.17G201000 Glycine max HOM05D004718 ORTHO05D005838 1.4e-40 169.9 122 67.2
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 1.4e-40 169.9 118 67.8
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 1.8e-40 169.5 121 66.1
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 1.8e-40 169.5 123 68.3
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 2.3e-40 169.1 121 65.3
Ca_15681_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 2.3e-40 169.1 121 64.5
Lalb_Chr14g0362131 Lupinus albus HOM05D004718 ORTHO05D005838 2.3e-40 169.1 121 64.5
TPR.G12432 Trifolium pratense HOM05D004718 ORTHO05D005838 2.3e-40 169.1 121 64.5
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 3.0e-40 168.7 121 65.3
Phvul.001G057700 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 3.0e-40 168.7 122 68.0
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 3.9e-40 168.3 120 64.2
VMungo1309G0968 Vigna mungo HOM05D004718 ORTHO05D005838 3.9e-40 168.3 121 64.5
CDE06G1884 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 5.2e-40 167.9 121 65.3
Zm00001eb008340 Zea mays HOM05D004718 ORTHO05D005838 5.2e-40 167.9 121 63.6
Os03g0192800 Oryza sativa ssp. japonica HOM05D004718 ORTHO05D005838 6.7e-40 167.5 121 63.6
VMungo0647G1764 Vigna mungo HOM05D004718 ORTHO05D005838 6.7e-40 167.5 121 66.9
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 6.7e-40 167.5 129 59.7
EL10Ac2g03649 Beta vulgaris HOM05D004718 ORTHO05D005838 2.6e-39 165.6 121 63.6
Eucgr.E04341 Eucalyptus grandis HOM05D004718 ORTHO05D005838 2.6e-39 165.6 121 63.6
MBI07_g41265_MAGBIO Magnolia biondii HOM05D004718 ORTHO05D005838 5.7e-39 164.5 121 65.3
Hund19371 Selenicereus undatus HOM05D004718 ORTHO05D005838 5.7e-39 164.5 121 63.6
Ca_12884_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 7.4e-39 164.1 121 63.6
Aqoxy7G00911 Aquilegia oxysepala HOM05D004718 ORTHO05D005838 9.7e-39 163.7 121 64.5
HPP92_023162 Vanilla planifolia HOM05D004718 ORTHO05D005838 2.8e-38 162.2 121 62.0
A06p28290 Brassica napus HOM05D004718 ORTHO05D005838 4.8e-38 161.4 122 60.7
BraA06t25772Z Brassica rapa HOM05D004718 ORTHO05D005838 4.8e-38 161.4 122 60.7
Medtr1g010040 Medicago truncatula HOM05D004718 ORTHO05D005838 1.1e-37 160.2 121 62.0
PSO421G0298 Papaver somniferum HOM05D004718 ORTHO05D005838 5.3e-37 157.9 121 61.2
DCAR_000697 Daucus carota HOM05D004718 ORTHO05D005838 7.0e-37 157.5 97 74.2
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 1.2e-36 156.8 122 62.3
vmacro12747 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 1.2e-36 156.8 100 71.0
TWI32G0049 Tripterygium wilfordii HOM05D004718 ORTHO05D005838 2.9e-35 152.1 113 62.8
ATR0006G074 Amborella trichopoda HOM05D004718 ORTHO05D005838 5.5e-34 147.9 119 62.2
SEGI_37293 Sequoiadendron giganteum HOM05D004718 ORTHO05D005838 2.1e-33 146.0 118 56.8
Mapoly0015s0043 Marchantia polymorpha HOM05D004718 ORTHO05D005838 1.0e-32 143.7 118 55.1
Aa31LG4G18090 Aethionema arabicum HOM05D004718 ORTHO05D005838 1.8e-32 142.9 105 60.0
TPR.G21961 Trifolium pratense HOM05D004718 ORTHO05D005838 3.0e-32 142.1 101 62.4
PSO017G4020 Papaver somniferum HOM05D004718 ORTHO05D005838 4.0e-32 141.7 121 57.0
PSO063G2513 Papaver somniferum HOM05D004718 ORTHO05D005838 6.8e-32 141.0 123 56.9
CDE04G3074 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 1.8e-29 132.9 85 71.8
SMO367G0705 Selaginella moellendorffii HOM05D004718 ORTHO05D005838 8.0e-25 117.5 89 58.4
Pp3c16_5610 Physcomitrium patens HOM05D004718 ORTHO05D005838 1.8e-24 116.3 116 45.7
CBR_g19585 Chara braunii HOM05D004718 ORTHO05D005838 2.3e-24 115.9 120 44.2
Dinv06170 Davidia involucrata HOM05D060011 ORTHO05D045116 2.2e-14 82.8 132 42.4
Cre01.g030450 Chlamydomonas reinhardtii HOM05D004718 ORTHO05D005838 1.2e-12 77.0 70 51.4
BcaB02g09597 Brassica carinata HOM05D004718 ORTHO05D005838 2.7e-12 75.9 128 36.7
MCO12G289 Micromonas commoda HOM05D004718 ORTHO05D005838 2.3e-11 72.8 72 47.2
Dinv29240 Davidia involucrata HOM05D003194 ORTHO05D003790 1.9e-10 69.7 53 66.0
Actinidia25724 Actinidia chinensis HOM05D004718 ORTHO05D005838 1.2e-07 60.5 39 76.9
PRCOL_00003856 Prasinoderma coloniale HOM05D004718 ORTHO05D005838 7.5e-07 57.8 88 33.0


User provided reference genes

Program Settings