Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 9.1e-99 363.6 188 100.0
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 1.2e-61 240.4 191 67.0
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 1.5e-61 240.0 191 67.0
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 3.4e-61 238.8 191 67.0
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 9.8e-61 237.3 189 69.8
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 9.8e-61 237.3 193 66.3
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 1.7e-60 236.5 199 65.3
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 8.3e-60 234.2 193 66.3
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 1.4e-59 233.4 193 67.9
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 1.8e-59 233.0 196 69.4
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 3.1e-59 232.3 198 64.6
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 4.1e-59 231.9 190 65.8
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 4.1e-59 231.9 199 64.8
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 5.4e-59 231.5 193 65.3
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 5.4e-59 231.5 193 65.8
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 1.2e-58 230.3 194 67.0
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 2.0e-58 229.6 191 66.0
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 3.5e-58 228.8 179 69.8
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 4.5e-58 228.4 197 69.0
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 5.9e-58 228.0 195 65.6
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 5.9e-58 228.0 193 66.3
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.3e-57 226.9 194 64.4
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.3e-57 226.9 194 64.4
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.3e-57 226.9 194 64.4
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 1.3e-57 226.9 202 64.9
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 1.3e-57 226.9 190 63.7
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 1.7e-57 226.5 201 62.2
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 2.9e-57 225.7 210 61.9
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 3.8e-57 225.3 190 66.8
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 5.0e-57 224.9 202 64.9
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 5.0e-57 224.9 202 62.4
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 6.6e-57 224.6 192 67.7
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 6.6e-57 224.6 186 67.7
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 6.6e-57 224.6 195 65.1
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 8.6e-57 224.2 139 80.6
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 1.1e-56 223.8 190 63.7
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.5e-56 223.4 211 61.6
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.5e-56 223.4 200 64.5
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 2.5e-56 222.6 208 62.5
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 2.5e-56 222.6 201 62.7
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 3.3e-56 222.2 211 61.1
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 3.3e-56 222.2 146 76.7
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 3.3e-56 222.2 139 79.9
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 4.3e-56 221.9 192 64.1
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 4.3e-56 221.9 211 61.1
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 4.3e-56 221.9 205 62.4
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 7.3e-56 221.1 173 69.4
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 9.5e-56 220.7 189 66.7
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.2e-55 220.3 200 62.5
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 1.6e-55 219.9 181 68.0
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 1.6e-55 219.9 196 61.2
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.6e-55 219.9 203 63.1
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 2.1e-55 219.5 203 62.6
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.8e-55 219.2 200 63.0
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.8e-55 219.2 200 63.5
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 2.8e-55 219.2 206 61.2
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 2.8e-55 219.2 190 62.1
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.6e-55 218.8 196 63.3
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 4.7e-55 218.4 199 61.3
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 4.7e-55 218.4 211 58.3
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 4.7e-55 218.4 205 64.4
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 4.7e-55 218.4 197 62.4
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 6.1e-55 218.0 195 66.2
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 6.1e-55 218.0 207 61.4
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 6.1e-55 218.0 190 64.2
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.1e-55 218.0 191 63.9
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.1e-55 218.0 191 64.4
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 6.1e-55 218.0 191 64.4
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 1.0e-54 217.2 131 84.7
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.0e-54 217.2 207 58.9
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 1.0e-54 217.2 188 64.4
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 1.4e-54 216.9 151 73.5
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.4e-54 216.9 205 58.5
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 2.3e-54 216.1 201 60.7
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 2.3e-54 216.1 207 61.8
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 3.0e-54 215.7 190 64.2
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 3.0e-54 215.7 186 66.7
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 3.0e-54 215.7 186 66.7
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 3.0e-54 215.7 210 60.0
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 4.0e-54 215.3 173 68.8
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 4.0e-54 215.3 188 65.4
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 4.0e-54 215.3 188 65.4
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 4.0e-54 215.3 188 64.9
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 4.0e-54 215.3 210 60.5
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 5.2e-54 214.9 173 68.2
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 5.2e-54 214.9 173 68.2
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 5.2e-54 214.9 191 64.9
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 5.2e-54 214.9 130 81.5
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 6.8e-54 214.5 189 64.6
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 8.9e-54 214.2 173 68.2
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 8.9e-54 214.2 145 77.9
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 8.9e-54 214.2 191 64.9
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 1.5e-53 213.4 145 77.9
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 1.5e-53 213.4 196 60.7
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 2.0e-53 213.0 124 86.3
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.0e-53 213.0 188 64.9
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.0e-53 213.0 190 64.7
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.0e-53 213.0 190 64.7
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 2.0e-53 213.0 190 64.7
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 3.4e-53 212.2 173 68.2
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 4.4e-53 211.8 145 77.2
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 5.7e-53 211.5 202 60.4
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 5.7e-53 211.5 201 61.2
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 7.5e-53 211.1 192 61.5
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 7.5e-53 211.1 179 67.0
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 7.5e-53 211.1 186 64.5
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 7.5e-53 211.1 191 61.8
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 9.8e-53 210.7 147 74.1
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 1.3e-52 210.3 185 65.9
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 1.3e-52 210.3 185 65.9
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 2.2e-52 209.5 185 65.9
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 3.7e-52 208.8 191 62.3
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 6.4e-52 208.0 185 63.8
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 6.4e-52 208.0 111 91.0
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 6.4e-52 208.0 201 58.2
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 1.1e-51 207.2 103 98.1
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 4.1e-51 205.3 103 97.1
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 5.4e-51 204.9 191 61.3
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 5.4e-51 204.9 194 59.8
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 7.0e-51 204.5 115 86.1
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 7.0e-51 204.5 103 95.1
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 9.2e-51 204.1 103 96.1
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 9.2e-51 204.1 189 61.9
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 1.2e-50 203.8 182 64.8
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.6e-50 203.4 113 90.3
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 1.6e-50 203.4 190 60.5
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 2.0e-50 203.0 198 59.1
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 3.5e-50 202.2 153 68.0
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 1.3e-49 200.3 112 84.8
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 1.7e-49 199.9 195 60.0
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 2.3e-49 199.5 200 61.0
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 1.1e-48 197.2 110 88.2
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 1.5e-48 196.8 103 92.2
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 8.0e-47 191.0 181 61.3
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 2.6e-45 186.0 102 91.2
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 4.4e-45 185.3 99 88.9
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 2.0e-42 176.4 119 72.3
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 3.9e-41 172.2 193 51.3
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 3.9e-41 172.2 186 51.6
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 8.6e-41 171.0 107 74.8
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 1.5e-40 170.2 194 52.1
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 4.7e-39 165.2 190 49.5
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 5.8e-37 158.3 150 56.7
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 2.9e-36 156.0 148 57.4
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 8.3e-36 154.5 187 49.2
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 1.9e-32 143.3 104 63.5
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 2.4e-30 136.3 99 64.6
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 9.6e-24 114.4 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 4.7e-23 112.1 142 43.0
Haze_27718 Corylus avellana HOM05D001946 ORTHO05D002111 9.0e-06 54.7 102 31.4
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 9.0e-06 54.7 33 78.8


User provided reference genes

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