Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 3308.5 1638 100.0
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 1973.0 1747 60.3
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 1949.9 1875 56.6
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 1778.8 1902 51.8
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 1752.6 1897 52.2
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 1740.3 1769 53.5
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 1708.3 1749 53.6
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 1705.3 1756 53.5
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 1696.8 1752 52.6
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 1693.3 1797 52.7
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 1685.6 1761 52.8
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 1684.8 1829 51.3
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 1677.9 1754 52.6
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 1676.4 1751 51.8
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 1676.0 1754 52.5
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 1673.3 1720 54.2
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 1672.5 1747 52.7
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 1671.8 1740 53.4
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 1664.8 1758 51.8
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 1664.4 1857 50.8
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 1662.5 1752 51.3
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 1662.1 1754 52.7
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 1660.6 1883 49.1
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 1657.9 1757 51.5
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 1657.5 1767 51.8
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 1657.1 1728 52.4
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 1656.0 1884 50.0
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 1655.2 1874 49.1
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 1654.4 1746 52.5
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 1654.4 1766 51.5
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 1653.6 1751 51.5
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 1652.9 1742 51.8
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1652.1 1766 51.4
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 1651.7 1752 51.9
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 1650.6 1869 49.2
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1650.2 1769 51.3
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1649.4 1763 51.7
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 1647.5 1743 51.3
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 1644.0 1744 51.7
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 1640.2 1749 51.0
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1637.5 1790 50.7
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 1635.9 1741 51.7
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 1631.3 1748 51.3
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 1630.5 1750 51.0
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 1629.0 1749 50.8
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 1626.7 1765 50.7
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 1625.1 1749 50.7
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 1624.8 1752 51.5
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 1623.6 1513 56.6
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 1623.6 1841 50.6
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 1619.4 1752 51.1
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 1613.6 1749 50.7
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 1605.1 1744 49.9
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 1599.3 1739 51.4
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 1597.8 1520 56.0
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 1595.9 1886 48.7
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1587.8 1726 52.2
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 1579.3 1750 50.2
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 1577.0 1618 54.3
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1571.6 1743 50.2
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 1570.4 1630 52.9
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 1567.0 1879 47.4
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1565.4 1755 50.0
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 1555.0 1858 47.4
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 1554.3 1876 47.1
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 1553.1 1832 48.6
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1548.5 1745 49.5
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 1546.2 1747 49.3
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1545.4 1750 49.3
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1542.7 1743 49.7
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 1539.6 1760 48.6
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 1525.8 1752 49.3
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 1525.4 1880 46.2
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1525.0 1719 49.4
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1523.5 1734 49.4
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 1520.8 1730 48.9
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1517.7 1888 46.6
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1515.4 1771 48.5
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1513.8 1738 49.2
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1512.3 1509 54.3
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 1508.4 1870 46.6
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 1466.8 1764 47.0
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 1464.1 1737 47.7
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1417.5 1272 58.4
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 1407.9 1728 47.0
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 1404.0 1744 47.3
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1391.7 1261 57.9
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1232.6 1516 47.4
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1200.7 1026 61.3
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1162.1 1372 49.5
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1098.6 1404 46.7
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1079.3 1625 40.7
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 6.5e-310 1068.1 1223 49.2
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 9.7e-298 1027.7 1697 38.1
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 1.7e-297 1026.9 1855 36.3
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 1.0e-286 991.1 990 53.5
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 8.6e-278 961.4 747 66.4
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 1.6e-268 930.6 803 60.4
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.6e-263 914.1 959 52.0
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.0e-246 858.2 1487 37.4
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 6.2e-236 822.4 1100 44.8
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 2.0e-226 790.8 989 46.2
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 6.0e-223 779.2 1456 36.1
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 2.5e-221 773.9 1048 43.9
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 3.0e-198 697.2 741 50.6
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 2.2e-193 681.0 516 67.1
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 2.4e-187 661.0 901 42.8
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 6.5e-185 652.9 551 60.8
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 6.1e-183 646.4 469 68.9
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.2e-167 595.5 522 58.4
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.0e-149 535.0 551 54.3
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.5e-144 518.1 852 41.3
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 1.2e-143 515.8 752 41.6
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 1.4e-139 502.3 939 35.3
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 3.2e-131 474.6 432 55.6
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 7.8e-130 469.9 429 55.9
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 2.3e-129 468.4 327 71.3
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 5.1e-129 467.2 392 61.7
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.6e-122 445.7 694 39.2
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 2.5e-120 438.3 442 52.5
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 1.6e-119 435.6 684 40.1
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.7e-113 415.6 384 54.9
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 2.7e-106 391.7 313 64.9
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.6e-93 348.6 379 51.2
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 1.3e-92 346.3 234 68.4
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 6.9e-86 323.9 837 29.5
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.7e-79 302.8 384 48.2
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 1.8e-78 299.3 827 28.4
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 8.8e-73 280.4 186 73.1
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.8e-62 246.1 421 35.9
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 5.2e-57 228.0 510 34.5
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 4.4e-48 198.4 503 30.0
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 7.0e-46 191.0 322 36.3
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.0e-44 187.2 488 32.0
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.0e-44 187.2 488 32.0
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 6.8e-33 147.9 102 73.5
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 1.2e-32 147.1 132 55.3
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 3.2e-30 139.0 220 38.2
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.5e-27 130.2 300 31.7
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 1.9e-27 129.8 202 38.1
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 1.2e-26 127.1 180 42.8
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 6.8e-25 121.3 94 60.6
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 3.4e-24 119.0 104 57.7
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 3.4e-24 119.0 130 50.8
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 4.4e-24 118.6 158 43.0
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 7.1e-22 111.3 104 57.7
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 1.0e-20 107.5 130 49.2
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 1.0e-20 107.5 176 36.4
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 1.3e-20 107.1 124 46.8
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 8.6e-20 104.4 247 30.8
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.5e-19 103.6 109 57.8
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.3e-19 102.1 58 70.7
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 7.3e-19 101.3 128 46.9
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 2.1e-18 99.8 122 45.9
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 3.1e-17 95.9 126 44.4
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 4.0e-17 95.5 167 32.3
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 8.9e-17 94.4 125 42.4
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 3.4e-16 92.4 129 41.9
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 2.9e-15 89.4 167 42.5
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 1.1e-14 87.4 91 45.1
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 1.9e-14 86.7 131 43.5
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 5.4e-14 85.1 100 44.0
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 4.6e-13 82.0 71 60.6
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 9.6e-11 74.3 86 47.7
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 9.6e-11 74.3 228 29.4
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.2e-10 73.9 173 34.1
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 6.8e-09 68.2 77 39.0
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 2.2e-07 63.2 85 36.5
Actinidia02220 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.2e-06 59.3 38 68.4


User provided reference genes

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