Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.9e-199 698.4 357 100.0
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 2.6e-147 525.8 333 79.0
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 2.6e-147 525.8 330 80.9
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.4e-145 520.0 361 75.1
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 7.1e-145 517.7 340 77.9
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.7e-144 515.8 349 76.2
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.7e-144 515.8 362 74.0
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.0e-143 513.8 347 75.2
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 2.3e-143 512.7 351 76.1
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 3.9e-143 511.9 350 74.3
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 3.9e-143 511.9 331 78.5
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 1.1e-142 510.4 360 73.1
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.5e-142 510.0 335 77.3
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.5e-142 510.0 336 76.8
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 2.5e-142 509.2 357 72.8
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 5.6e-142 508.1 334 77.2
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 7.4e-142 507.7 333 77.2
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 9.6e-142 507.3 329 77.5
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.3e-141 506.9 347 72.9
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.6e-141 506.5 334 76.0
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.6e-141 506.5 329 77.5
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 4.8e-141 505.0 360 72.5
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 8.1e-141 504.2 336 76.2
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.8e-140 503.1 329 76.9
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 2.4e-140 502.7 327 78.3
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.1e-140 502.3 331 76.1
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 3.1e-140 502.3 334 75.7
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 4.0e-140 501.9 335 75.5
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 5.3e-140 501.5 360 71.9
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 6.9e-140 501.1 330 77.3
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 6.9e-140 501.1 335 76.1
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 6.9e-140 501.1 332 76.5
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 6.9e-140 501.1 353 73.1
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.2e-139 500.4 344 73.0
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.5e-139 500.0 348 73.0
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.0e-139 499.6 352 74.1
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.0e-139 499.6 328 77.4
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 2.0e-139 499.6 333 75.4
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 2.6e-139 499.2 344 73.0
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.4e-139 498.8 344 73.0
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 3.4e-139 498.8 328 77.4
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 3.4e-139 498.8 344 72.7
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 3.4e-139 498.8 331 76.1
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 4.5e-139 498.4 352 74.1
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.8e-139 498.0 348 74.4
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.0e-138 497.3 329 76.3
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.0e-138 497.3 356 71.9
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.7e-138 496.5 328 77.1
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 2.2e-138 496.1 330 75.5
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.2e-138 496.1 391 69.1
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 2.9e-138 495.7 329 75.4
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 4.9e-138 495.0 355 71.0
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 4.9e-138 495.0 329 75.4
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 4.9e-138 495.0 329 75.4
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 4.9e-138 495.0 329 75.4
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 6.5e-138 494.6 329 75.4
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 6.5e-138 494.6 344 73.0
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 6.5e-138 494.6 334 74.3
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.1e-137 493.8 331 75.5
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 1.1e-137 493.8 356 73.3
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 1.4e-137 493.4 332 75.0
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.4e-137 493.4 331 75.5
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 1.4e-137 493.4 349 71.9
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 2.5e-137 492.7 331 75.2
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 2.5e-137 492.7 331 75.2
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 3.2e-137 492.3 332 75.6
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 4.2e-137 491.9 338 72.5
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.5e-137 491.5 332 75.0
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 5.5e-137 491.5 332 75.0
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 9.3e-137 490.7 331 75.5
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 1.6e-136 490.0 342 73.1
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.6e-136 488.4 324 75.3
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 3.0e-135 485.7 336 75.0
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 3.0e-135 485.7 356 71.3
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 3.9e-135 485.3 329 74.2
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 5.1e-135 485.0 337 74.2
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 8.7e-135 484.2 329 75.4
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 8.7e-135 484.2 346 72.3
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-134 483.8 328 74.4
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-134 483.8 329 75.4
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-134 483.8 329 75.4
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-134 483.8 329 75.4
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.1e-134 483.8 348 71.3
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 1.5e-134 483.4 328 74.4
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.5e-134 483.4 378 66.9
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.3e-134 481.9 329 74.8
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 5.7e-134 481.5 328 73.8
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.3e-133 480.3 331 74.6
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 2.1e-133 479.6 347 72.9
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 2.8e-133 479.2 344 71.8
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 1.1e-132 477.2 328 74.4
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-132 476.5 344 72.1
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 3.1e-132 475.7 299 79.3
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 3.1e-132 475.7 372 68.0
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 5.3e-132 474.9 347 70.3
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 2.2e-130 469.5 332 72.3
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 3.8e-130 468.8 336 72.9
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 5.0e-130 468.4 329 73.9
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 1.1e-129 467.2 332 72.0
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 5.5e-129 464.9 338 71.6
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 5.5e-129 464.9 355 71.0
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.1e-126 457.2 374 66.0
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.5e-126 456.1 325 72.9
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 4.1e-124 448.7 299 75.6
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.0e-123 446.4 325 69.5
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 8.5e-122 441.0 420 59.8
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.1e-121 440.7 412 60.7
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 2.5e-121 439.5 353 65.2
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 4.2e-121 438.7 331 68.3
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 2.6e-118 429.5 290 75.9
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.4e-116 423.7 355 64.8
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.5e-115 420.2 332 64.8
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 4.5e-115 418.7 335 64.5
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 5.9e-115 418.3 344 65.1
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 2.7e-112 409.5 324 64.5
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 5.2e-111 405.2 332 63.0
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.5e-110 403.7 332 62.7
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 2.0e-110 403.3 328 65.9
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 2.8e-109 399.4 262 77.1
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 6.3e-109 398.3 304 68.1
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 1.4e-108 397.1 329 61.7
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.7e-106 390.2 309 65.0
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 1.5e-105 387.1 328 60.7
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.7e-104 382.9 364 59.9
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.4e-103 380.6 288 71.5
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.2e-103 378.6 262 74.0
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 6.7e-103 378.3 308 62.3
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.7e-99 366.3 346 59.0
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 1.5e-97 360.5 250 75.2
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.0e-95 354.4 305 60.3
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 6.8e-95 351.7 352 56.2
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.6e-94 349.7 273 64.8
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.4e-94 349.0 243 76.1
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 8.3e-93 344.7 243 72.4
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 4.1e-92 342.4 330 57.6
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 1.6e-91 340.5 245 74.3
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-89 333.6 361 53.2
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 7.2e-89 331.6 330 55.5
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.0e-87 325.9 277 64.3
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 5.2e-87 325.5 240 69.6
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.8e-85 319.7 236 71.2
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-83 313.9 242 70.2
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.4e-78 295.8 284 58.5
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 4.7e-72 275.8 199 74.9
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 3.4e-70 269.6 199 70.4
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-57 228.0 141 78.0
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.2e-56 224.6 279 48.0
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.7e-53 214.2 133 79.7
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 8.4e-53 211.8 130 75.4
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 5.2e-47 192.6 115 80.9
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 9.0e-47 191.8 163 60.7
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 7.6e-46 188.7 328 40.5
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 6.2e-40 169.1 251 43.8
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.6e-38 163.7 104 76.0
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 1.3e-37 161.4 233 37.8
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 9.3e-36 155.2 206 46.6
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 5.1e-34 149.4 97 68.0
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 2.1e-32 144.1 88 77.3
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.7e-32 143.3 92 71.7
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 2.4e-31 140.6 188 52.1
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 9.0e-31 138.7 96 64.6
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 7.1e-28 129.0 76 81.6
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.0e-26 125.2 84 76.2
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 4.3e-25 119.8 82 67.1
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 6.0e-19 99.4 112 56.2
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 1.3e-18 98.2 73 61.6
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.3e-18 97.4 73 58.9
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-17 95.1 73 60.3
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 2.5e-17 94.0 75 64.0
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 6.3e-16 89.4 76 52.6
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 9.7e-09 65.5 38 86.8
CSS0002735 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D002061 2.8e-08 63.9 70 54.3
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 6.3e-08 62.8 35 94.3
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 1.4e-07 61.6 48 66.7
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.2e-06 58.5 53 62.3


User provided reference genes

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