Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 1.7e-117 426.0 219 100.0
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 1.9e-111 406.0 220 96.4
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 3.4e-105 385.2 219 88.1
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 1.3e-104 383.3 219 87.2
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 7.1e-103 377.5 219 86.3
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.2e-102 376.7 220 85.9
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 2.7e-102 375.6 219 85.8
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 3.5e-102 375.2 216 87.0
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 4.6e-102 374.8 220 86.4
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 6.0e-102 374.4 219 86.8
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.3e-101 373.2 219 84.9
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 3.0e-101 372.1 218 85.3
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 5.1e-101 371.3 221 85.5
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 5.1e-101 371.3 221 85.5
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.1e-100 370.2 219 84.9
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 5.6e-100 367.9 219 84.5
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 9.5e-100 367.1 218 84.4
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 1.6e-99 366.3 219 83.1
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.6e-99 366.3 219 84.9
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 2.8e-99 365.5 221 84.2
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 3.6e-99 365.2 216 83.8
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 3.6e-99 365.2 221 84.2
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 3.6e-99 365.2 221 84.2
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 3.6e-99 365.2 221 85.1
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 8.1e-99 364.0 221 84.2
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 8.1e-99 364.0 221 83.7
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 8.1e-99 364.0 220 83.6
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.4e-98 363.2 219 83.1
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 2.3e-98 362.5 219 84.5
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 2.3e-98 362.5 221 82.8
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 3.1e-98 362.1 220 82.3
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 4.0e-98 361.7 220 82.3
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 4.0e-98 361.7 218 82.6
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 5.2e-98 361.3 219 81.7
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 6.8e-98 360.9 221 81.9
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 2.0e-97 359.4 216 82.9
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 2.0e-97 359.4 219 82.2
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 2.0e-97 359.4 220 82.3
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 3.4e-97 358.6 216 82.4
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 4.4e-97 358.2 219 82.2
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 9.9e-97 357.1 220 82.7
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 1.7e-96 356.3 219 83.1
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 1.7e-96 356.3 217 82.5
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 2.2e-96 355.9 220 82.3
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 2.9e-96 355.5 220 81.4
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 2.9e-96 355.5 220 81.4
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 2.9e-96 355.5 220 81.4
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 2.9e-96 355.5 220 81.8
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 2.9e-96 355.5 220 83.2
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 3.7e-96 355.1 220 81.4
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 3.7e-96 355.1 221 81.4
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 6.4e-96 354.4 215 84.7
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 6.4e-96 354.4 220 82.3
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 8.4e-96 354.0 219 81.7
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.1e-95 353.6 220 81.4
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 1.1e-95 353.6 220 80.9
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 1.1e-95 353.6 220 81.4
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 1.1e-95 353.6 216 83.3
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 1.4e-95 353.2 220 80.9
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 1.4e-95 353.2 217 83.9
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.4e-95 353.2 220 80.9
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.9e-95 352.8 220 80.9
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 3.2e-95 352.1 221 82.8
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 4.1e-95 351.7 216 81.9
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 4.1e-95 351.7 217 82.5
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 5.4e-95 351.3 217 82.5
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 5.4e-95 351.3 220 79.5
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 7.1e-95 350.9 217 82.0
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 7.1e-95 350.9 214 83.2
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 1.2e-94 350.1 220 80.0
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 1.2e-94 350.1 220 80.0
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 1.2e-94 350.1 218 80.3
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.2e-94 350.1 219 80.4
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 1.2e-94 350.1 223 82.5
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 1.6e-94 349.7 220 80.0
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.6e-94 349.7 220 80.9
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.6e-94 349.7 219 80.8
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.6e-94 349.7 219 80.8
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.6e-94 349.7 218 79.8
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 1.6e-94 349.7 216 80.6
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 2.1e-94 349.4 220 80.0
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.1e-94 349.4 220 81.4
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 2.7e-94 349.0 217 81.6
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 2.7e-94 349.0 220 80.0
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 2.7e-94 349.0 220 80.0
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 2.7e-94 349.0 217 82.0
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 79.5
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.5e-94 348.6 216 81.0
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 81.4
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 4.6e-94 348.2 220 79.1
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 4.6e-94 348.2 230 78.3
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 4.6e-94 348.2 217 81.1
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 6.0e-94 347.8 225 80.4
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 6.0e-94 347.8 219 79.9
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 6.0e-94 347.8 216 80.6
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 6.0e-94 347.8 216 80.6
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 6.0e-94 347.8 203 84.7
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 7.8e-94 347.4 220 81.8
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 1.0e-93 347.1 220 79.1
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.0e-93 347.1 219 80.4
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.3e-93 346.7 220 79.1
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.7e-93 346.3 219 79.9
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 1.7e-93 346.3 221 80.1
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 2.3e-93 345.9 217 81.1
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.3e-93 345.9 216 80.1
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 3.0e-93 345.5 220 80.0
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 6.6e-93 344.4 220 79.1
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 1.1e-92 343.6 216 79.6
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 1.9e-92 342.8 217 78.8
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 3.3e-92 342.0 218 78.0
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 4.3e-92 341.7 215 81.4
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 7.3e-92 340.9 214 79.9
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 2.1e-91 339.3 218 80.7
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 2.1e-91 339.3 218 80.7
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 4.7e-91 338.2 217 78.8
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 2.4e-90 335.9 218 79.8
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 3.1e-90 335.5 219 78.1
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 3.1e-90 335.5 217 77.9
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 1.3e-88 330.1 219 78.1
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 4.3e-84 315.1 220 74.5
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 1.3e-80 303.5 224 72.8
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 6.4e-80 301.2 165 88.5
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 3.2e-79 298.9 221 73.3
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.7e-77 293.1 193 75.6
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 1.5e-76 290.0 175 77.7
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 2.1e-75 286.2 163 84.0
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.2e-71 272.3 165 83.0
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 6.7e-69 264.6 219 67.1
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 8.7e-69 264.2 222 63.1
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 2.5e-68 262.7 169 74.6
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.3e-68 262.3 185 70.8
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 5.6e-68 261.5 178 74.2
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 9.6e-68 260.8 184 70.1
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.7e-62 242.7 222 63.1
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 4.1e-58 228.8 220 60.9
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 9.0e-58 227.6 209 58.4
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 7.2e-47 191.4 189 54.5
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.1e-46 189.9 142 76.1
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.1e-44 184.1 150 59.3
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 3.3e-44 182.6 127 72.4
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 1.7e-43 180.3 171 54.4
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 2.7e-30 136.3 104 71.2
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.2e-15 85.9 59 71.2
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 4.2e-15 85.9 59 71.2
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.8e-11 73.2 57 73.7
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 6.3e-11 72.0 58 74.1
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 5.6e-07 58.9 100 40.0
Aa31LG9G5680 Aethionema arabicum HOM05D001772 ORTHO05D000476 1.2e-06 57.8 56 60.7


User provided reference genes

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