Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g16130 Utricularia gibba HOM05D000667 ORTHO05D004096 1.9e-56 222.2 107 100.0
Oeu034141.1 Olea europaea HOM05D000667 ORTHO05D004096 6.4e-33 144.1 82 80.5
Dinv32241 Davidia involucrata HOM05D000667 ORTHO05D004096 8.4e-33 143.7 82 80.5
Lj2P303T17 Lonicera japonica HOM05D000667 ORTHO05D004096 3.2e-32 141.7 82 76.8
Oeu031276.1 Olea europaea HOM05D000667 ORTHO05D004096 4.2e-32 141.4 82 78.0
Prupe.4G081700 Prunus persica HOM05D000667 ORTHO05D004096 9.3e-32 140.2 82 76.8
VMungo0540G0780 Vigna mungo HOM05D000667 ORTHO05D004096 9.3e-32 140.2 82 75.6
Manes.15G122200 Manihot esculenta HOM05D000667 ORTHO05D004096 2.1e-31 139.0 82 78.0
Haze_05613 Corylus avellana HOM05D000667 ORTHO05D004096 2.7e-31 138.7 82 74.4
Ah.14g088850 Amaranthus hybridus HOM05D000667 ORTHO05D004096 3.5e-31 138.3 82 75.6
AUR62014707 Chenopodium quinoa HOM05D000667 ORTHO05D004096 4.6e-31 137.9 82 75.6
Phvul.006G165500 Phaseolus vulgaris HOM05D000667 ORTHO05D004096 1.3e-30 136.3 82 74.4
Medtr2g019230 Medicago truncatula HOM05D000667 ORTHO05D004096 3.0e-30 135.2 82 74.4
Carub.0001s2831 Capsella rubella HOM05D000667 ORTHO05D004096 3.9e-30 134.8 82 74.4
PGR042G2716 Punica granatum HOM05D000667 ORTHO05D004096 8.7e-30 133.7 82 74.4
TPR.G26252 Trifolium pratense HOM05D000667 ORTHO05D004096 8.7e-30 133.7 81 75.3
Nitab4.5_0000869g0010 Nicotiana tabacum HOM05D000667 ORTHO05D004096 1.5e-29 132.9 83 73.5
AL1G43990 Arabidopsis lyrata HOM05D000667 ORTHO05D004096 1.9e-29 132.5 82 73.2
CiPaw.09G122700 Carya illinoinensis HOM05D000667 ORTHO05D004096 3.3e-29 131.7 82 72.0
MBI02_g36351_MAGBIO Magnolia biondii HOM05D000667 ORTHO05D004096 4.3e-29 131.3 82 76.8
AT1G30090 Arabidopsis thaliana HOM05D000667 ORTHO05D004096 7.3e-29 130.6 82 72.0
Psat1g188160 Pisum sativum HOM05D000667 ORTHO05D004096 9.6e-29 130.2 82 70.7
Nn3g20642 Nelumbo nucifera HOM05D000667 ORTHO05D004096 1.6e-28 129.4 82 74.4
PSO541G1865 Papaver somniferum HOM05D000667 ORTHO05D004096 3.6e-28 128.3 82 73.2
TAR629G0334 Trochodendron aralioides HOM05D000667 ORTHO05D004096 4.8e-28 127.9 82 72.0
PSO675G5528 Papaver somniferum HOM05D000667 ORTHO05D004096 1.8e-27 125.9 82 72.0
Aqoxy1G01694 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 3.1e-27 125.2 82 69.5
Aqoxy5G03132 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 2.6e-26 122.1 82 68.3
ATR1098G029 Amborella trichopoda HOM05D000667 ORTHO05D004096 7.6e-26 120.6 82 67.1
Aqoxy1G01690 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 1.4e-24 116.3 82 65.9
CSS0050416 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 1.2e-23 113.2 82 67.1
Cpa.g.sc246.7 Carica papaya HOM05D000667 ORTHO05D004096 1.6e-23 112.8 69 76.8
SMO174G0059 Selaginella moellendorffii HOM05D000667 ORTHO05D004096 2.7e-23 112.1 82 65.9
Glyma.13G218800 Glycine max HOM05D000667 ORTHO05D004096 5.3e-19 97.8 59 74.6
AUR62012488 Chenopodium quinoa HOM05D000667 ORTHO05D004096 1.5e-18 96.3 58 77.6
Glyma.15G093300 Glycine max HOM05D000667 ORTHO05D004096 1.3e-17 93.2 55 76.4
Sed0011115 Sechium edule HOM05D000667 ORTHO05D004096 2.2e-17 92.4 58 75.9
Cc00_g01110 Coffea canephora HOM05D000667 ORTHO05D004096 2.9e-17 92.0 53 81.1
Manes.17G071100 Manihot esculenta HOM05D000667 ORTHO05D004096 6.4e-17 90.9 59 72.9
Ca_00536_v3 Cicer arietinum L. HOM05D000667 ORTHO05D004096 1.1e-16 90.1 55 74.5
ECA234G3936 Erigeron canadensis HOM05D000667 ORTHO05D004096 1.1e-16 90.1 57 73.7
CANSAT35G0944 Cannabis sativa HOM05D000667 ORTHO05D004096 1.4e-16 89.7 57 73.7
Os07g0153400 Oryza sativa ssp. japonica HOM05D000667 ORTHO05D004096 5.5e-16 87.8 59 74.6
Lj6g0000657 Lotus japonicus HOM05D000667 ORTHO05D004096 3.5e-15 85.1 53 71.7
SGA_v2.0_scaffold106G30656 Striga asiatica HOM05D000667 ORTHO05D004096 6.0e-15 84.3 47 83.0
COL.COLO4_19029 Corchorus olitorius HOM05D000667 ORTHO05D004096 7.9e-15 84.0 91 44.0
HanXRQChr16g0525601 Helianthus annuus HOM05D000667 ORTHO05D004096 7.9e-15 84.0 58 65.5
Zm00001eb300170 Zea mays HOM05D000667 ORTHO05D004096 7.9e-15 84.0 60 73.3
CSS0039480 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 1.3e-14 83.2 49 79.6
TWI73G0887 Tripterygium wilfordii HOM05D000667 ORTHO05D004096 1.3e-14 83.2 48 77.1
FvH4_3g05461 Fragaria vesca HOM05D000667 ORTHO05D004096 2.3e-14 82.4 49 73.5
THA.LOC104820652 Tarenaya hassleriana HOM05D000667 ORTHO05D004096 2.3e-14 82.4 47 78.7
Gohir.A05G064100 Gossypium hirsutum HOM05D000667 ORTHO05D004096 3.0e-14 82.0 91 42.9
ATR0580G133 Amborella trichopoda HOM05D000667 ORTHO05D004096 3.9e-14 81.6 81 49.4
CAN.G641.46 Capsicum annuum HOM05D000667 ORTHO05D004096 3.9e-14 81.6 49 77.6
Ciclev10008681m.g Citrus clementina HOM05D000667 ORTHO05D004096 3.9e-14 81.6 91 42.9
Lalb_Chr18g0055381 Lupinus albus HOM05D000667 ORTHO05D004096 5.1e-14 81.3 48 77.1
QL05p057661 Quercus lobata HOM05D000667 ORTHO05D004096 5.1e-14 81.3 48 75.0
Solyc02g021600.1 Solanum lycopersicum HOM05D000667 ORTHO05D004096 5.1e-14 81.3 49 77.6
unitig_8.g4886 Utricularia gibba HOM05D000667 ORTHO05D004096 6.7e-14 80.9 42 92.9
Cpa.g.sc23.19 Carica papaya HOM05D000667 ORTHO05D004096 8.7e-14 80.5 91 40.7
Sabra06G0148800 Salix brachista HOM05D000667 ORTHO05D004096 8.7e-14 80.5 47 78.7
MSTRG.14777 Avicennia marina HOM05D000667 ORTHO05D004096 1.1e-13 80.1 42 90.5
QL12p025198 Quercus lobata HOM05D000667 ORTHO05D004096 1.1e-13 80.1 82 47.6
Sabra18G0014800 Salix brachista HOM05D000667 ORTHO05D004096 1.1e-13 80.1 91 42.9
GSVIVG01021505001 Vitis vinifera HOM05D000667 ORTHO05D004096 1.1e-13 80.1 82 48.8
Hma1.2p1_0020F.1_g014030 Hydrangea macrophylla HOM05D000667 ORTHO05D004096 1.5e-13 79.7 43 83.7
arahy.Tifrunner.gnm1.ann1.BT8YZU Arachis hypogaea HOM05D000667 ORTHO05D004096 1.9e-13 79.3 46 80.4
arahy.Tifrunner.gnm1.ann1.MZ7XDG Arachis hypogaea HOM05D000667 ORTHO05D004096 1.9e-13 79.3 46 80.4
Haze_21754 Corylus avellana HOM05D000667 ORTHO05D004096 1.9e-13 79.3 83 44.6
Sopen02g006160 Solanum pennellii HOM05D000667 ORTHO05D004096 1.9e-13 79.3 48 77.1
PGSC0003DMG400003174 Solanum tuberosum HOM05D000667 ORTHO05D004096 1.9e-13 79.3 47 78.7
MSTRG.16248 Avicennia marina HOM05D000667 ORTHO05D004096 2.5e-13 79.0 42 90.5
Gorai.009G067500 Gossypium raimondii HOM05D000667 ORTHO05D004096 2.5e-13 79.0 91 41.8
ClCG03G006780 Citrullus lanatus HOM05D000667 ORTHO05D004096 3.3e-13 78.6 48 75.0
MELO3C002742.2 Cucumis melo HOM05D000667 ORTHO05D004096 3.3e-13 78.6 48 75.0
Gohir.D05G066701 Gossypium hirsutum HOM05D000667 ORTHO05D004096 3.3e-13 78.6 91 41.8
Manes.15G098200 Manihot esculenta HOM05D000667 ORTHO05D004096 5.6e-13 77.8 82 45.1
Nn8g40514 Nelumbo nucifera HOM05D000667 ORTHO05D004096 5.6e-13 77.8 97 41.2
MBI14_g22131_MAGBIO Magnolia biondii HOM05D000667 ORTHO05D004096 7.4e-13 77.4 81 45.7
RcHm_v2.0_Chr5g0014291 Rosa chinensis HOM05D000667 ORTHO05D004096 9.6e-13 77.0 43 81.4
Nitab4.5_0002744g0040 Nicotiana tabacum HOM05D000667 ORTHO05D004096 1.3e-12 76.6 57 64.9
Peaxi162Scf00307g00074 Petunia axillaris HOM05D000667 ORTHO05D004096 1.3e-12 76.6 42 85.7
Duzib187G0973 Durio zibethinus HOM05D000667 ORTHO05D004096 1.6e-12 76.3 82 45.1
CsaV3_1G032360 Cucumis sativus L. HOM05D000667 ORTHO05D004096 2.8e-12 75.5 43 81.4
Thecc.09G007600 Theobroma cacao HOM05D000667 ORTHO05D004096 2.8e-12 75.5 82 41.5
Oeu006650.1 Olea europaea HOM05D000667 ORTHO05D004096 3.7e-12 75.1 42 81.0
GSVIVG01035518001 Vitis vinifera HOM05D000667 ORTHO05D004096 3.7e-12 75.1 82 43.9
CANSAT25G0354 Cannabis sativa HOM05D000667 ORTHO05D004096 4.8e-12 74.7 81 42.0
Actinidia16706 Actinidia chinensis HOM05D000667 ORTHO05D004096 8.2e-12 73.9 41 87.8
Hund21282 Selenicereus undatus HOM05D000667 ORTHO05D004096 8.2e-12 73.9 41 85.4
Sp1g25950 Schrenkiella parvula HOM05D000667 ORTHO05D004096 1.1e-11 73.6 44 77.3
Nitab4.5_0000501g0040 Nicotiana tabacum HOM05D000667 ORTHO05D004096 1.4e-11 73.2 38 89.5
Potri.006G193800 Populus trichocarpa HOM05D000667 ORTHO05D004096 2.4e-11 72.4 38 89.5
Prupe.1G459700 Prunus persica HOM05D000667 ORTHO05D004096 3.1e-11 72.0 82 41.5
Aa31LG6G5580 Aethionema arabicum HOM05D000667 ORTHO05D004096 4.0e-11 71.6 41 82.9
MD05G1283000 Malus domestica HOM05D000667 ORTHO05D004096 5.3e-11 71.2 42 81.0
MD10G1261300 Malus domestica HOM05D000667 ORTHO05D004096 5.3e-11 71.2 42 81.0
Sed0013854 Sechium edule HOM05D000667 ORTHO05D004096 5.3e-11 71.2 42 81.0
HanXRQChr11g0341261 Helianthus annuus HOM05D000667 ORTHO05D004096 9.0e-11 70.5 39 82.1
Nitab4.5_0004527g0010 Nicotiana tabacum HOM05D000667 ORTHO05D004096 9.0e-11 70.5 37 89.2
Duzib235G0040 Durio zibethinus HOM05D000667 ORTHO05D004096 1.2e-10 70.1 42 81.0
Migut.H01358 Erythranthe guttata HOM05D000667 ORTHO05D004096 1.2e-10 70.1 42 73.8
Gohir.A10G041600 Gossypium hirsutum HOM05D000667 ORTHO05D004096 2.0e-10 69.3 41 80.5
Gorai.011G045000 Gossypium raimondii HOM05D000667 ORTHO05D004096 2.0e-10 69.3 41 80.5
Sp4g03540 Schrenkiella parvula HOM05D000667 ORTHO05D004096 2.0e-10 69.3 83 38.6
EL10Ac8g20542 Beta vulgaris HOM05D000667 ORTHO05D004096 2.6e-10 68.9 38 84.2
Ciclev10015483m.g Citrus clementina HOM05D000667 ORTHO05D004096 2.6e-10 68.9 41 80.5
COL.COLO4_31061 Corchorus olitorius HOM05D000667 ORTHO05D004096 2.6e-10 68.9 42 78.6
Lsat_1_v5_gn_1_116980 Lactuca sativa HOM05D000667 ORTHO05D004096 2.6e-10 68.9 41 78.0
Thecc.06G149500 Theobroma cacao HOM05D000667 ORTHO05D004096 2.6e-10 68.9 42 73.8
Atru.chr10.1214 Acer truncatum HOM05D000667 ORTHO05D004096 3.4e-10 68.6 41 80.5
Oeu005649.1 Olea europaea HOM05D000667 ORTHO05D004096 3.4e-10 68.6 51 62.7
CSS0002746 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 4.5e-10 68.2 38 78.9
CSS0004812 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 4.5e-10 68.2 38 78.9
Thhalv10000205m.g Eutrema salsugineum HOM05D000667 ORTHO05D004096 5.8e-10 67.8 83 38.6
Gohir.D10G042500 Gossypium hirsutum HOM05D000667 ORTHO05D004096 5.8e-10 67.8 41 78.0
A09p56230 Brassica napus HOM05D000667 ORTHO05D004096 7.6e-10 67.4 82 40.2
BraA09t41017Z Brassica rapa HOM05D000667 ORTHO05D004096 7.6e-10 67.4 82 40.2
MD08G1127900 Malus domestica HOM05D000667 ORTHO05D004096 7.6e-10 67.4 82 39.0
Sc24g0001650 Simmondsia chinensis HOM05D000667 ORTHO05D004096 7.6e-10 67.4 38 78.9
CARHR029320 Cardamine hirsuta HOM05D000667 ORTHO05D004096 1.0e-09 67.0 41 75.6
CiPaw.07G212200 Carya illinoinensis HOM05D000667 ORTHO05D004096 1.0e-09 67.0 77 40.3
BcaC07g40923 Brassica carinata HOM05D000667 ORTHO05D004096 1.3e-09 66.6 82 39.0
C08p39180 Brassica napus HOM05D000667 ORTHO05D004096 1.3e-09 66.6 82 39.0
BolC8t51491H Brassica oleracea HOM05D000667 ORTHO05D004096 1.3e-09 66.6 82 39.0
FAN15G0719 Fragaria x ananassa HOM05D000667 ORTHO05D004096 1.3e-09 66.6 82 35.4
MD15G1107400 Malus domestica HOM05D000667 ORTHO05D004096 1.3e-09 66.6 82 37.8
CiPaw.07G212000 Carya illinoinensis HOM05D000667 ORTHO05D004096 1.7e-09 66.2 77 40.3
HanXRQChr01g0003361 Helianthus annuus HOM05D000667 ORTHO05D004096 1.7e-09 66.2 37 81.1
AT2G24540 Arabidopsis thaliana HOM05D000667 ORTHO05D004096 2.2e-09 65.9 83 37.3
Thhalv10007818m.g Eutrema salsugineum HOM05D000667 ORTHO05D004096 2.2e-09 65.9 41 75.6
Gohir.D09G077366 Gossypium hirsutum HOM05D000667 ORTHO05D004096 2.2e-09 65.9 39 82.1
Gohir.D09G077500 Gossypium hirsutum HOM05D000667 ORTHO05D004096 2.2e-09 65.9 39 82.1
Gorai.006G092600 Gossypium raimondii HOM05D000667 ORTHO05D004096 2.2e-09 65.9 39 82.1
AL4G15090 Arabidopsis lyrata HOM05D000667 ORTHO05D004096 2.9e-09 65.5 83 37.3
Gohir.A09G077500 Gossypium hirsutum HOM05D000667 ORTHO05D004096 3.8e-09 65.1 39 82.1
BcaB07g32610 Brassica carinata HOM05D000667 ORTHO05D004096 6.5e-09 64.3 41 70.7
BcaC05g27027 Brassica carinata HOM05D000667 ORTHO05D004096 6.5e-09 64.3 41 70.7
A09p36430 Brassica napus HOM05D000667 ORTHO05D004096 6.5e-09 64.3 41 70.7
C05p28890 Brassica napus HOM05D000667 ORTHO05D004096 6.5e-09 64.3 41 70.7
BolC5t31609H Brassica oleracea HOM05D000667 ORTHO05D004096 6.5e-09 64.3 41 70.7
BraA09t39166Z Brassica rapa HOM05D000667 ORTHO05D004096 6.5e-09 64.3 41 70.7
Carub.0004s0390 Capsella rubella HOM05D000667 ORTHO05D004096 6.5e-09 64.3 82 36.6
CARHR117500 Cardamine hirsuta HOM05D000667 ORTHO05D004096 1.1e-08 63.5 91 35.2
Duzib160G0105 Durio zibethinus HOM05D000667 ORTHO05D004096 1.1e-08 63.5 38 81.6
Pp3c22_21630 Physcomitrium patens HOM05D000667 ORTHO05D003843 1.1e-08 63.5 70 47.1
TPR.G12382 Trifolium pratense HOM05D000667 ORTHO05D004096 1.1e-08 63.5 91 36.3
Rhsim13G0114300 Rhododendron simsii HOM05D000667 ORTHO05D004096 3.2e-08 62.0 37 81.1
AagrBONN_evm.TU.Sc2ySwM_344.4698 Anthoceros agrestis HOM05D000667 ORTHO05D003095 7.1e-08 60.8 70 50.0
Psat0s1809g0080 Pisum sativum HOM05D000667 ORTHO05D004096 9.3e-08 60.5 90 31.1
Lsat_1_v5_gn_4_29341 Lactuca sativa HOM05D000667 ORTHO05D004096 2.1e-07 59.3 36 80.6
Mapoly0141s0015 Marchantia polymorpha HOM05D001337 ORTHO05D008829 2.7e-07 58.9 71 43.7
Glyma.06G076900 Glycine max HOM05D000667 ORTHO05D004096 6.0e-07 57.8 77 31.2
Pp3c18_4130 Physcomitrium patens HOM05D000614 ORTHO05D003843 1.0e-06 57.0 70 44.3
Medtr3g108860 Medicago truncatula HOM05D000667 ORTHO05D004096 1.3e-06 56.6 81 30.9
Sp4g01030 Schrenkiella parvula HOM05D000249 ORTHO05D000206 1.8e-06 56.2 106 34.0
PGR004G0795 Punica granatum HOM05D000249 ORTHO05D000206 2.3e-06 55.8 69 47.8
CARHR113030 Cardamine hirsuta HOM05D000249 ORTHO05D000206 3.0e-06 55.5 106 34.0
TWI75G0786 Tripterygium wilfordii HOM05D000667 ORTHO05D004096 3.0e-06 55.5 82 32.9
Glyma.04G075700 Glycine max HOM05D000667 ORTHO05D004096 3.9e-06 55.1 77 31.2
Lj1g0003153 Lotus japonicus HOM05D000667 ORTHO05D004096 3.9e-06 55.1 86 31.4
MD15G1175400 Malus domestica HOM05D000667 ORTHO05D002614 3.9e-06 55.1 65 46.2
CARHR247150 Cardamine hirsuta HOM05D000249 ORTHO05D000206 5.1e-06 54.7 86 38.4
Ca_15665_v3 Cicer arietinum L. HOM05D000667 ORTHO05D004096 5.1e-06 54.7 81 30.9
Eucgr.C04009 Eucalyptus grandis HOM05D000667 ORTHO05D004096 6.7e-06 54.3 95 34.7
Glyma.19G002200 Glycine max HOM05D000667 ORTHO05D002614 8.7e-06 53.9 65 44.6


User provided reference genes

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