Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 8.8e-99 363.6 182 100.0
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 2.3e-59 232.6 138 81.9
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 2.3e-59 232.6 138 81.9
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.8e-59 231.1 172 66.9
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 1.2e-58 230.3 139 81.3
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 1.2e-58 230.3 177 68.9
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 1.2e-58 230.3 165 71.5
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.5e-58 229.9 160 70.0
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 1.5e-58 229.9 160 70.0
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.5e-58 229.9 164 70.7
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.5e-58 229.9 164 70.7
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 2.0e-58 229.6 161 71.4
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 2.0e-58 229.6 161 70.8
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 2.0e-58 229.6 171 69.6
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 2.6e-58 229.2 156 73.1
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 1.7e-57 226.5 160 71.2
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 1.7e-57 226.5 178 64.0
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 1.7e-57 226.5 155 75.5
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 2.9e-57 225.7 143 77.6
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 3.7e-57 225.3 134 79.9
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 4.9e-57 224.9 168 70.2
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 6.4e-57 224.6 147 76.2
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 6.4e-57 224.6 162 71.0
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 8.3e-57 224.2 153 73.2
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.1e-56 223.8 143 74.8
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 1.4e-56 223.4 181 64.6
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 1.4e-56 223.4 161 71.4
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 1.4e-56 223.4 181 64.6
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 1.4e-56 223.4 161 71.4
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 1.4e-56 223.4 175 66.3
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 1.4e-56 223.4 140 76.4
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 3.2e-56 222.2 161 70.8
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 3.2e-56 222.2 183 65.0
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 3.2e-56 222.2 136 76.5
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 4.1e-56 221.9 172 64.0
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 5.4e-56 221.5 147 74.8
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 5.4e-56 221.5 161 70.8
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 5.4e-56 221.5 165 68.5
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 7.0e-56 221.1 177 63.3
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 7.0e-56 221.1 161 69.6
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 9.2e-56 220.7 153 71.2
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 1.2e-55 220.3 154 72.7
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 1.2e-55 220.3 172 65.1
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 1.2e-55 220.3 161 67.7
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 1.2e-55 220.3 183 63.9
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 1.6e-55 219.9 177 65.0
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 1.6e-55 219.9 177 65.0
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 1.6e-55 219.9 181 65.2
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 1.6e-55 219.9 182 64.3
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 2.0e-55 219.5 134 77.6
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 2.7e-55 219.2 182 63.2
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 2.7e-55 219.2 163 67.5
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.7e-55 219.2 161 69.6
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.5e-55 218.8 161 69.6
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 4.6e-55 218.4 181 63.5
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 4.6e-55 218.4 181 63.5
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 4.6e-55 218.4 181 63.5
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 4.6e-55 218.4 130 78.5
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 5.9e-55 218.0 182 63.2
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 5.9e-55 218.0 162 68.5
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 5.9e-55 218.0 140 76.4
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 7.8e-55 217.6 161 70.2
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.3e-54 216.9 162 67.9
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 1.3e-54 216.9 138 76.1
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 1.3e-54 216.9 160 67.5
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 1.7e-54 216.5 177 65.0
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.7e-54 216.5 129 78.3
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 2.3e-54 216.1 182 63.2
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 3.0e-54 215.7 168 66.7
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 6.6e-54 214.5 152 71.1
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 6.6e-54 214.5 150 71.3
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 1.5e-53 213.4 142 76.1
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 1.9e-53 213.0 180 61.1
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 1.9e-53 213.0 160 67.5
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 2.5e-53 212.6 163 66.9
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 3.3e-53 212.2 182 61.0
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 3.3e-53 212.2 151 68.9
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 4.3e-53 211.8 163 66.9
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 9.5e-53 210.7 143 72.7
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.2e-52 210.3 153 70.6
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.6e-52 209.9 132 77.3
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 2.1e-52 209.5 142 71.8
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 4.7e-52 208.4 157 68.8
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 4.7e-52 208.4 184 60.3
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 4.7e-52 208.4 182 59.9
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 4.7e-52 208.4 153 69.9
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 8.0e-52 207.6 143 71.3
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 1.4e-51 206.8 156 66.7
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 1.4e-51 206.8 156 66.0
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 2.3e-51 206.1 119 80.7
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 2.3e-51 206.1 143 69.9
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.1e-51 205.7 114 83.3
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 6.8e-51 204.5 143 72.0
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 6.8e-51 204.5 169 65.1
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 1.2e-50 203.8 156 66.0
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.5e-50 203.4 175 63.4
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 2.6e-50 202.6 163 63.8
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 5.8e-50 201.4 172 60.5
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 1.3e-49 200.3 187 60.4
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 1.3e-49 200.3 172 60.5
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 1.3e-49 200.3 201 54.7
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 1.7e-49 199.9 172 59.9
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 2.2e-49 199.5 135 70.4
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 3.7e-49 198.7 135 72.6
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 8.3e-49 197.6 154 65.6
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 1.1e-48 197.2 135 72.6
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.4e-48 196.8 183 60.7
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 1.2e-47 193.7 172 59.3
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 2.3e-46 189.5 141 68.1
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 5.0e-46 188.3 152 63.8
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 1.5e-45 186.8 162 63.0
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.9e-45 186.4 146 62.3
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 3.3e-45 185.7 153 65.4
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 5.6e-45 184.9 275 43.3
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 7.3e-45 184.5 275 42.9
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.1e-44 183.0 131 66.4
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 2.8e-44 182.6 151 64.2
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 6.2e-44 181.4 132 70.5
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 2.3e-43 179.5 161 59.6
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 1.5e-42 176.8 125 69.6
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 7.1e-40 167.9 182 52.7
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 2.3e-38 162.9 121 65.3
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 1.5e-37 160.2 171 49.7
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 1.5e-37 160.2 210 48.1
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 5.6e-37 158.3 126 60.3
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.2e-32 142.5 87 77.0
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 3.5e-31 139.0 87 77.0
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.7e-30 136.7 82 80.5
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 5.1e-30 135.2 82 80.5
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 6.6e-30 134.8 105 57.1
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.5e-29 132.9 87 71.3
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 3.6e-28 129.0 177 46.9
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 5.8e-26 121.7 97 55.7
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 3.8e-25 119.0 82 72.0
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 4.9e-25 118.6 106 55.7
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 4.2e-24 115.5 87 67.8
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 8.4e-17 91.3 97 56.7
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.1e-16 90.9 85 58.8
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 7.1e-16 88.2 95 53.7
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 1.9e-13 80.1 54 70.4
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 1.9e-13 80.1 54 75.9
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 9.6e-13 77.8 60 66.7
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 4.9e-09 65.5 69 40.6
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 6.0e-07 58.5 50 58.0


User provided reference genes

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