Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 0.0e+00 2745.3 1405 100.0
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1576.6 1556 58.8
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1514.2 1530 58.6
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1504.6 1512 59.4
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1421.8 1565 54.9
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1421.4 1335 59.8
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1408.3 1505 53.9
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1389.8 1560 52.6
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1378.2 1566 52.4
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1364.7 1566 51.8
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1354.3 1424 55.1
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1350.1 1565 51.9
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1332.8 1510 51.2
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1332.8 1510 51.2
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1320.1 1493 52.8
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1283.1 1308 54.4
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1275.0 1516 52.4
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1269.2 1046 63.9
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1247.6 1488 51.3
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1245.7 1467 50.4
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1241.1 1480 49.8
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1240.3 1495 49.1
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1239.9 1423 51.7
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1239.2 1501 49.2
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1234.6 1413 51.2
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1233.0 1468 48.4
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1232.6 1452 50.0
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1232.2 1477 49.7
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1225.7 1372 52.6
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1224.2 1508 49.3
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1222.2 1404 51.0
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1221.8 1433 50.7
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1221.5 1506 49.0
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1219.5 1510 48.5
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1217.6 1507 48.8
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1214.1 1460 49.3
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1213.4 1415 50.4
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1213.0 1314 51.4
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1211.8 1490 49.3
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1210.7 1444 50.1
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1207.2 1451 50.1
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1204.1 1473 49.7
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1202.6 1490 48.3
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1201.4 1483 49.4
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1198.0 1519 48.7
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1192.9 1509 47.4
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1189.5 1502 48.0
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1181.8 1292 50.8
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1172.1 1412 49.8
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1169.8 1593 45.8
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1169.1 1231 53.1
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1168.7 1504 46.9
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1164.8 1296 50.8
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1164.1 1299 50.0
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1163.3 1296 50.5
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1162.9 1444 49.0
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1156.7 1419 46.6
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1154.8 1505 46.5
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1154.0 1504 47.3
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1152.1 1447 47.4
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1149.4 1238 50.6
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1149.0 1068 57.1
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1137.1 1597 44.9
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1134.8 1476 46.5
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1130.9 1320 47.7
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1122.5 1305 49.5
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1122.5 1240 51.7
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 1088.9 1295 47.6
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 1080.5 1329 47.5
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 1077.0 1451 45.7
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 1076.2 1308 47.8
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 9.6e-312 1074.3 1398 47.0
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 4.2e-310 1068.5 1362 46.5
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 2.8e-309 1065.8 1336 47.0
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 1.4e-308 1063.5 1449 45.8
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 3.1e-308 1062.4 1421 46.0
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 9.8e-307 1057.4 1517 44.0
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 8.3e-306 1054.3 1506 44.2
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.2e-305 1052.4 1458 45.5
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 1.7e-303 1046.6 1422 45.9
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 3.0e-303 1045.8 1317 46.0
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 3.3e-302 1042.3 1228 48.0
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 2.1e-301 1039.6 1509 44.1
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 3.7e-298 1028.9 1265 48.1
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 1.6e-296 1023.5 1061 51.6
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 9.9e-291 1004.2 1213 49.1
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 5.4e-281 971.8 868 58.9
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 1.6e-264 917.1 1278 45.6
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 3.5e-264 916.0 1525 39.5
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 4.8e-261 905.6 783 61.7
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 1.7e-258 897.1 855 55.1
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 4.6e-248 862.4 1154 47.1
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 9.7e-238 828.2 898 52.6
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.6e-235 820.1 780 55.4
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 9.7e-230 801.6 1048 43.6
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 1.6e-227 794.3 877 49.9
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 2.3e-223 780.4 1087 42.8
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 4.4e-214 749.6 1038 42.4
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 3.5e-187 660.2 987 44.5
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 1.5e-185 654.8 1079 39.0
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 8.1e-168 595.9 466 65.7
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 1.4e-156 558.5 828 40.3
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.0e-142 511.5 859 42.6
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 4.6e-131 473.8 487 52.0
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 5.0e-125 453.8 758 42.9
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 1.9e-124 451.8 758 43.1
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 2.1e-123 448.4 356 63.5
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 3.9e-114 417.5 812 36.6
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 1.8e-111 408.7 512 45.3
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 7.2e-100 370.2 304 62.2
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 6.3e-96 357.1 317 57.7
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 1.1e-92 346.3 309 57.3
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 1.5e-89 335.9 519 41.4
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 1.6e-75 289.3 479 42.2
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 2.8e-75 288.5 498 41.6
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 5.8e-73 280.8 208 65.4
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.1e-68 266.5 180 67.2
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 1.5e-65 256.1 240 57.5
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.9e-64 251.9 172 69.8
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.4e-58 232.3 234 54.3
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 1.2e-51 209.9 144 70.1
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 6.2e-51 207.6 595 35.3
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 2.7e-46 192.2 140 65.0
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 9.0e-42 177.2 111 73.0
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 3.8e-40 171.8 138 58.7
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 4.3e-36 158.3 232 40.9
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 2.4e-34 152.5 122 58.2
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.1e-34 152.1 187 47.1
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 3.2e-31 142.1 172 47.7
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 3.0e-29 135.6 657 23.3
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 1.1e-28 133.7 465 27.7
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 1.1e-28 133.7 462 24.9
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 7.4e-28 131.0 305 32.8
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 9.6e-28 130.6 483 31.9
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 4.8e-27 128.3 79 77.2
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 1.4e-26 126.7 76 72.4
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 2.2e-24 119.4 121 49.6
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 3.8e-24 118.6 153 49.0
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 3.8e-24 118.6 103 54.4
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 8.4e-24 117.5 128 50.8
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 1.9e-20 106.3 156 41.7
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 5.7e-20 104.8 103 49.5
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 2.2e-19 102.8 159 42.8
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 2.8e-19 102.4 64 73.4
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 1.5e-17 96.7 115 49.6
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 1.0e-16 94.0 86 51.2
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 3.6e-14 85.5 46 76.1
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 1.1e-12 80.5 54 63.0
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 1.1e-10 73.9 60 58.3
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 1.1e-10 73.9 164 37.2
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 1.4e-10 73.6 51 64.7
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 1.4e-10 73.6 97 49.5
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 1.8e-10 73.2 82 52.4
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 5.3e-10 71.6 72 52.8
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 6.9e-10 71.2 107 44.9
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 2.2e-08 66.2 375 22.7
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 6.5e-08 64.7 45 68.9
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 3.2e-07 62.4 60 48.3
SHI18922 Sapria himalayana HOM05D004216 ORTHO05D004926 7.2e-07 61.2 38 68.4
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 2.7e-06 59.3 82 45.1


User provided reference genes

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