Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.1e-245 852.8 439 100.0
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 4.9e-164 581.6 440 71.6
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.3e-159 567.0 441 69.8
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 4.9e-156 555.1 439 68.3
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 8.4e-156 554.3 439 68.3
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 8.4e-156 554.3 441 67.8
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 2.5e-155 552.7 445 67.2
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 3.5e-154 548.9 440 66.1
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 7.9e-154 547.7 440 66.6
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 5.1e-153 545.0 440 67.0
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 1.5e-152 543.5 440 65.9
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 3.3e-152 542.3 435 66.7
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 5.7e-152 541.6 446 65.9
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.3e-151 540.4 436 66.5
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 1.4e-150 537.0 441 66.0
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 3.1e-150 535.8 436 66.5
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.7e-148 530.0 439 65.6
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.0e-148 528.5 437 65.2
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 1.1e-147 527.3 439 64.7
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 1.9e-147 526.6 440 63.6
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 3.2e-147 525.8 435 65.5
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 7.2e-147 524.6 440 65.7
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.4e-147 524.2 437 64.8
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 1.2e-146 523.9 435 65.7
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.6e-146 523.5 432 65.3
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.6e-146 523.5 437 64.5
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.1e-146 523.1 444 63.5
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.7e-146 522.7 447 63.3
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 3.6e-146 522.3 437 64.8
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 4.6e-146 521.9 437 65.2
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 1.0e-145 520.8 436 65.6
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 2.3e-145 519.6 436 64.7
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 5.1e-145 518.5 440 64.5
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 6.7e-145 518.1 437 64.1
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 1.1e-144 517.3 437 64.1
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 1.1e-144 517.3 433 63.7
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.5e-144 516.9 433 64.2
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 4.3e-144 515.4 439 64.9
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 4.3e-144 515.4 437 64.5
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.7e-144 515.0 437 63.6
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 7.4e-144 514.6 446 63.7
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 2.8e-143 512.7 435 63.2
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 3.7e-143 512.3 439 64.5
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 8.2e-143 511.1 436 63.8
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.1e-142 510.8 437 63.8
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 1.1e-142 510.8 437 64.1
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.4e-142 510.4 437 63.4
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.8e-142 510.0 433 63.7
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.4e-142 509.6 440 62.5
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.1e-142 509.2 433 63.5
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 5.3e-142 508.4 437 64.1
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.5e-141 506.9 433 63.5
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 7.7e-141 504.6 439 61.5
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 3.8e-140 502.3 440 63.2
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.4e-139 500.4 450 61.8
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 2.5e-139 499.6 438 63.0
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 4.2e-139 498.8 439 63.3
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 4.2e-139 498.8 445 63.1
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 7.9e-138 494.6 440 60.5
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.0e-137 494.2 473 58.6
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.4e-137 493.8 437 62.0
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.4e-137 493.8 441 60.8
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.8e-137 493.4 468 59.8
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 3.0e-137 492.7 437 62.2
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 6.7e-137 491.5 444 61.5
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 3.3e-136 489.2 437 62.5
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 4.4e-136 488.8 439 62.0
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 5.7e-136 488.4 436 61.0
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 7.4e-136 488.0 452 60.0
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 1.3e-135 487.3 433 63.5
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.3e-135 487.3 439 61.7
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 1.1e-134 484.2 470 59.1
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 9.1e-134 481.1 436 59.9
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 1.7e-132 476.9 438 60.7
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 2.9e-132 476.1 434 60.6
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 1.1e-131 474.2 414 61.8
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.7e-130 469.5 441 59.6
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 3.6e-130 469.2 437 60.0
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.7e-129 464.9 439 60.4
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.1e-128 464.2 439 59.9
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 4.4e-128 462.2 437 57.7
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 5.7e-128 461.8 436 61.5
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 7.4e-128 461.5 437 59.3
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 1.4e-126 457.2 437 58.6
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 7.7e-125 451.4 436 56.0
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 8.5e-124 448.0 437 58.1
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 1.9e-123 446.8 444 56.5
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 9.4e-123 444.5 440 56.1
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 8.8e-121 438.0 437 58.4
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.2e-120 437.6 436 56.9
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 2.0e-120 436.8 436 55.7
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 3.4e-120 436.0 435 56.1
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 7.5e-120 434.9 437 55.8
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 8.3e-119 431.4 438 55.9
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.4e-118 430.6 440 54.8
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.8e-118 430.3 439 54.7
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 5.3e-118 428.7 440 56.1
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 9.1e-118 427.9 436 57.8
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.2e-117 427.6 441 54.6
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 2.7e-117 426.4 441 54.4
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 3.5e-117 426.0 439 55.1
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 3.5e-117 426.0 440 54.3
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 3.5e-117 426.0 439 55.1
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.7e-116 423.7 395 60.0
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 2.2e-116 423.3 439 54.9
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 2.5e-115 419.9 439 54.0
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 3.2e-115 419.5 440 54.3
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 4.2e-115 419.1 440 55.0
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.6e-114 417.2 439 53.8
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 4.7e-114 415.6 440 53.6
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 6.1e-114 415.2 331 67.4
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 2.3e-113 413.3 437 53.3
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 2.6e-112 409.8 437 54.7
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 2.2e-111 406.8 399 57.4
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 2.2e-111 406.8 317 68.8
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 4.8e-111 405.6 437 53.3
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 1.1e-110 404.4 392 58.7
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 1.4e-110 404.1 440 52.3
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 3.3e-107 392.9 435 49.7
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 7.2e-107 391.7 436 52.5
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 2.1e-106 390.2 457 50.3
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 4.4e-104 382.5 241 78.8
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 9.8e-104 381.3 239 79.5
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 4.1e-102 375.9 375 55.7
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.2e-98 364.4 433 47.8
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 3.4e-96 356.3 433 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 3.2e-94 349.7 454 45.8
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 2.7e-93 346.7 401 53.4
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 1.2e-88 331.3 436 45.6
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 1.1e-81 308.1 407 49.6
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.4e-78 297.0 448 46.4
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 2.5e-75 287.0 368 48.6
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 2.1e-74 283.9 369 48.2
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.4e-73 280.4 293 54.3
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 6.0e-69 265.8 348 47.4
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 4.0e-57 226.5 192 63.0
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 5.8e-56 222.6 330 42.7
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 6.0e-53 212.6 194 59.3
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 5.1e-52 209.5 441 34.5
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 2.9e-47 193.7 194 54.1
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 1.8e-44 184.5 363 35.5
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.7e-44 182.6 220 53.2
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 1.9e-43 181.0 368 37.5
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.2e-40 171.8 307 39.7
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 4.1e-33 146.7 261 39.1
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 3.3e-27 127.1 105 63.8
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.2e-21 108.6 153 46.4
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 2.1e-21 107.8 76 68.4
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 2.7e-21 107.5 313 29.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 2.6e-19 100.9 157 41.4
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 4.2e-14 83.6 65 66.2
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 1.2e-13 82.0 48 83.3
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.6e-13 81.6 101 45.5
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.1e-13 81.3 58 72.4
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 2.2e-10 71.2 53 73.6
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 6.3e-10 69.7 205 27.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.2e-08 65.5 62 56.5
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.7e-08 64.3 49 65.3
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 7.7e-08 62.8 102 38.2
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.5e-07 59.7 139 33.8
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 8.5e-07 59.3 52 51.9
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 5.5e-06 56.6 134 25.4


User provided reference genes

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