Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 2.7e-98 362.1 192 100.0
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 2.6e-53 212.6 187 63.6
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 9.4e-51 204.1 221 53.8
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 2.1e-50 203.0 166 65.7
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 7.9e-50 201.1 166 65.1
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 1.8e-49 199.9 211 55.5
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 6.7e-49 198.0 189 57.1
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 8.8e-49 197.6 189 58.2
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 1.1e-48 197.2 192 58.3
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 1.1e-48 197.2 160 65.0
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 3.3e-48 195.7 192 57.8
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 9.7e-48 194.1 160 62.5
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 1.7e-47 193.4 171 60.2
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.8e-47 192.6 160 63.1
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.8e-47 192.6 160 63.1
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 4.8e-47 191.8 193 57.5
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 4.8e-47 191.8 205 54.6
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 8.2e-47 191.0 160 61.9
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 8.2e-47 191.0 159 60.4
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 1.8e-46 189.9 191 56.5
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 2.4e-46 189.5 160 60.6
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 1.2e-45 187.2 160 61.2
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 1.2e-45 187.2 160 61.2
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 2.0e-45 186.4 160 61.9
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 2.6e-45 186.0 163 60.1
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 3.4e-45 185.7 206 52.4
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 3.4e-45 185.7 193 54.9
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 7.7e-45 184.5 160 61.9
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 2.2e-44 183.0 159 59.7
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 2.2e-44 183.0 156 60.9
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 2.2e-44 183.0 160 58.1
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 2.9e-44 182.6 164 57.3
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 3.8e-44 182.2 171 54.4
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 5.0e-44 181.8 164 57.3
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 6.5e-44 181.4 159 58.5
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 8.5e-44 181.0 188 52.7
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 1.1e-43 180.6 159 59.1
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 1.9e-43 179.9 206 49.0
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 2.5e-43 179.5 206 49.0
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 4.2e-43 178.7 160 59.4
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 4.2e-43 178.7 164 57.3
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 4.2e-43 178.7 164 57.3
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 4.2e-43 178.7 159 57.2
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 4.2e-43 178.7 159 59.1
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 5.5e-43 178.3 163 58.3
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 5.5e-43 178.3 197 50.8
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 5.5e-43 178.3 160 59.4
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 7.2e-43 177.9 159 56.6
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 7.2e-43 177.9 164 56.1
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 1.2e-42 177.2 160 57.5
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.2e-42 177.2 159 57.9
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 1.6e-42 176.8 160 56.9
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 1.6e-42 176.8 162 58.6
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 2.1e-42 176.4 159 59.1
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 2.7e-42 176.0 160 56.2
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.7e-42 176.0 159 56.6
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 2.7e-42 176.0 159 56.6
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 8.0e-42 174.5 191 51.3
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 1.8e-41 173.3 160 55.6
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 2.3e-41 172.9 160 56.9
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 3.0e-41 172.6 159 56.0
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 3.9e-41 172.2 178 53.4
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 3.9e-41 172.2 159 56.6
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 3.9e-41 172.2 184 51.1
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 1.1e-40 170.6 186 52.2
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 2.0e-40 169.9 159 54.1
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 3.3e-40 169.1 144 61.1
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 5.7e-40 168.3 158 55.7
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 5.7e-40 168.3 193 49.2
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 9.7e-40 167.5 160 53.8
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 9.7e-40 167.5 166 54.2
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 2.2e-39 166.4 161 57.1
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 2.8e-39 166.0 173 54.3
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 3.7e-39 165.6 199 48.2
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 4.8e-39 165.2 160 55.6
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 1.1e-38 164.1 194 51.5
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 1.1e-38 164.1 207 47.8
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 1.4e-38 163.7 160 56.2
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 2.4e-38 162.9 161 56.5
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 2.4e-38 162.9 160 54.4
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 1.2e-37 160.6 197 46.2
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 2.0e-37 159.8 163 54.0
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 2.0e-37 159.8 161 55.3
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 4.5e-37 158.7 172 52.3
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.2e-36 156.4 167 52.1
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 5.0e-36 155.2 159 50.3
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 5.0e-36 155.2 159 52.2
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 8.5e-36 154.5 159 50.9
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 1.9e-35 153.3 161 54.0
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 1.2e-34 150.6 205 47.8
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 4.7e-34 148.7 161 52.8
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 8.0e-34 147.9 160 51.9
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 2.6e-32 142.9 151 51.0
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 3.3e-32 142.5 160 46.2
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 7.5e-32 141.4 175 46.9
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 7.5e-32 141.4 160 45.6
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 7.5e-32 141.4 160 45.6
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 7.5e-32 141.4 160 45.6
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 9.7e-32 141.0 129 61.2
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.2e-31 139.8 160 46.9
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 2.2e-31 139.8 176 46.6
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 2.2e-31 139.8 122 59.8
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 3.7e-31 139.0 160 46.2
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 4.8e-31 138.7 159 45.9
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 1.1e-30 137.5 160 45.0
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 1.1e-30 137.5 160 46.2
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 1.8e-30 136.7 160 43.8
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 4.1e-30 135.6 160 45.6
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 5.3e-30 135.2 160 45.0
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 5.3e-30 135.2 165 46.7
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 9.1e-30 134.4 160 44.4
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 9.1e-30 134.4 160 44.4
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 1.2e-29 134.0 160 44.4
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.2e-29 134.0 166 45.2
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 2.0e-29 133.3 164 47.6
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 2.7e-29 132.9 188 46.8
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 3.5e-29 132.5 183 43.7
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 5.9e-29 131.7 160 43.8
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 5.9e-29 131.7 155 44.5
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 5.9e-29 131.7 148 47.3
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 7.7e-29 131.3 160 43.8
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 7.7e-29 131.3 164 46.3
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 1.3e-28 130.6 160 43.1
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 3.2e-27 125.9 175 42.9
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 5.5e-27 125.2 175 42.9
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 7.2e-27 124.8 109 58.7
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 3.6e-26 122.5 159 44.7
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 3.6e-26 122.5 159 44.7
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 1.8e-25 120.2 114 55.3
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 1.5e-24 117.1 168 39.3
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 1.0e-17 94.4 102 53.9
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 1.5e-16 90.5 94 50.0
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 9.8e-16 87.8 93 48.4
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 3.7e-15 85.9 63 68.3
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 3.5e-13 79.3 115 37.4
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 5.0e-12 75.5 70 55.7
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 8.6e-12 74.7 51 70.6
TAR622G0113 Trochodendron aralioides HOM05D003184 ORTHO05D000394 1.0e-09 67.8 155 29.7
Dinv25627 Davidia involucrata HOM05D003184 ORTHO05D000394 1.5e-08 63.9 157 29.3
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 2.0e-08 63.5 48 62.5
EL10Ac6g13375 Beta vulgaris HOM05D003184 ORTHO05D000394 2.2e-07 60.1 152 23.7
PGR142G2053 Punica granatum HOM05D003184 ORTHO05D000394 2.2e-07 60.1 158 27.8
Oeu026200.1 Olea europaea HOM05D001151 ORTHO05D001504 3.7e-07 59.3 167 29.9
Pp3c7_9280 Physcomitrium patens HOM05D017508 ORTHO05D023077 2.4e-06 56.6 203 25.1
Potri.017G062100 Populus trichocarpa HOM05D003184 ORTHO05D000394 9.2e-06 54.7 184 25.5
QL02p070196 Quercus lobata HOM05D003184 ORTHO05D000394 9.2e-06 54.7 155 25.8


User provided reference genes

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