Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 6.1e-216 753.8 369 100.0
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 1.4e-127 460.3 349 66.5
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 1.4e-124 450.3 335 66.6
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 6.3e-120 434.9 345 63.2
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.4e-116 423.7 329 63.2
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.9e-116 423.3 345 60.9
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 1.6e-115 420.2 321 65.4
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 1.6e-115 420.2 338 60.9
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 2.7e-115 419.5 339 60.8
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 1.8e-114 416.8 334 62.0
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 3.9e-114 415.6 328 63.7
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.9e-114 415.6 340 60.6
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 6.7e-114 414.8 334 61.4
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 8.8e-114 414.5 345 60.6
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 2.0e-113 413.3 344 59.3
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 5.7e-113 411.8 326 61.3
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.3e-112 410.6 338 59.2
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 2.8e-112 409.5 334 60.2
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 3.7e-112 409.1 334 61.4
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 1.1e-111 407.5 339 57.8
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.1e-111 407.5 336 59.8
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 3.1e-111 406.0 338 59.5
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 4.1e-111 405.6 347 57.9
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 5.3e-111 405.2 335 59.1
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 5.3e-111 405.2 352 58.0
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 9.1e-111 404.4 335 59.1
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 9.1e-111 404.4 334 58.7
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.2e-110 404.1 347 57.9
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.5e-110 403.7 334 60.2
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 3.5e-110 402.5 345 57.4
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.5e-110 402.1 341 58.9
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 4.5e-110 402.1 334 60.2
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.0e-109 401.0 326 59.5
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.7e-109 400.2 326 60.7
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 2.2e-109 399.8 339 58.7
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.2e-109 399.8 334 59.0
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 2.9e-109 399.4 334 59.3
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 5.0e-109 398.7 326 59.8
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 8.5e-109 397.9 344 56.7
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 8.5e-109 397.9 335 59.4
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.1e-108 397.5 334 57.8
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 1.4e-108 397.1 326 59.5
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 1.9e-108 396.7 337 59.6
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 3.2e-108 396.0 326 59.5
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 3.2e-108 396.0 337 59.3
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 4.2e-108 395.6 326 59.5
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 5.5e-108 395.2 335 59.1
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 5.5e-108 395.2 330 60.0
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 7.2e-108 394.8 341 56.0
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 7.2e-108 394.8 340 59.4
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 1.2e-107 394.0 321 62.0
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 1.2e-107 394.0 341 61.6
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 2.1e-107 393.3 326 59.2
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 2.7e-107 392.9 332 58.4
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 4.7e-107 392.1 323 61.0
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 8.0e-107 391.3 337 57.9
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.0e-106 391.0 347 57.6
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 5.2e-106 388.7 333 58.0
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 5.2e-106 388.7 334 58.1
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 8.8e-106 387.9 335 57.3
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 8.8e-106 387.9 326 60.4
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.1e-105 387.5 335 57.3
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 1.5e-105 387.1 327 59.3
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 1.5e-105 387.1 326 58.9
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 2.0e-105 386.7 326 58.9
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 2.6e-105 386.3 322 60.2
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 2.6e-105 386.3 326 59.2
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 3.3e-105 386.0 325 59.4
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 5.7e-105 385.2 336 57.4
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 5.7e-105 385.2 326 58.9
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 7.4e-105 384.8 322 59.0
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 9.7e-105 384.4 341 57.2
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 9.7e-105 384.4 314 61.5
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.3e-104 384.0 333 57.4
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 2.2e-104 383.3 328 57.0
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 4.8e-104 382.1 320 59.4
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 8.2e-104 381.3 338 57.4
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.4e-103 380.6 350 56.0
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 3.1e-103 379.4 326 58.6
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 4.1e-103 379.0 334 56.9
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 9.1e-103 377.9 326 56.7
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 1.6e-102 377.1 339 55.5
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 2.6e-102 376.3 337 55.5
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 2.6e-102 376.3 326 58.0
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.7e-101 373.6 335 56.7
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.7e-101 373.6 356 54.2
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 8.5e-101 371.3 335 53.4
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 2.1e-99 366.7 338 56.2
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 8.8e-98 361.3 317 59.0
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 4.4e-97 359.0 349 51.3
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 1.3e-96 357.5 341 51.9
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 1.7e-96 357.1 402 48.5
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 8.3e-96 354.8 336 53.6
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.4e-95 354.0 273 61.5
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 4.5e-94 349.0 344 52.9
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 4.5e-94 349.0 328 54.3
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 2.9e-93 346.3 271 63.8
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 8.5e-93 344.7 326 52.5
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 1.1e-92 344.4 297 58.9
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 3.2e-92 342.8 308 54.5
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 3.2e-92 342.8 328 52.4
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 8.0e-91 338.2 348 51.1
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.5e-89 334.0 243 64.6
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 1.7e-88 330.5 274 59.9
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 1.7e-88 330.5 274 59.9
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 8.3e-88 328.2 297 56.6
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 4.1e-87 325.9 296 55.7
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.4e-87 325.5 329 52.6
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 5.9e-86 322.0 275 57.8
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 7.7e-86 321.6 281 58.0
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.3e-85 320.1 356 49.2
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 2.9e-85 319.7 349 48.7
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.1e-84 317.8 324 52.2
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 2.5e-84 316.6 306 52.6
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 3.3e-84 316.2 324 49.7
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 3.0e-82 309.7 268 59.0
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 5.7e-81 305.4 327 45.0
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.3e-80 304.3 300 51.3
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 1.5e-73 280.8 247 55.9
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 8.3e-72 275.0 208 65.4
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 2.4e-71 273.5 256 51.6
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 5.4e-71 272.3 299 43.8
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 8.0e-67 258.5 198 64.1
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 2.0e-65 253.8 201 64.2
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 3.7e-64 249.6 270 47.8
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 4.3e-60 236.1 307 44.0
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.1e-58 231.5 179 62.6
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 1.4e-58 231.1 258 45.7
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 3.7e-56 223.0 258 40.7
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 8.3e-56 221.9 207 55.6
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 1.1e-55 221.5 348 39.4
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 1.9e-47 194.1 289 37.7
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.7e-46 190.3 158 56.3
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 6.9e-42 175.6 153 55.6
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 6.9e-42 175.6 176 50.0
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 6.6e-37 159.1 232 41.4
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.4e-34 151.4 133 57.1
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 1.8e-34 151.0 302 34.1
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 5.3e-34 149.4 210 39.5
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 9.0e-34 148.7 210 39.5
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.5e-30 136.7 165 41.8
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 8.4e-24 115.5 79 67.1
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 2.1e-22 110.9 287 27.9
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 3.5e-22 110.2 131 46.6
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 1.2e-14 85.1 115 40.9
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 3.0e-13 80.5 113 40.7
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 6.7e-13 79.3 59 64.4
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 8.2e-11 72.4 91 41.8
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 8.2e-11 72.4 91 41.8
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 1.8e-10 71.2 51 66.7
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 6.9e-10 69.3 71 45.1
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 5.9e-09 66.2 112 36.6
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.9e-07 61.2 44 59.1


User provided reference genes

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