Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 0.0e+00 1107.0 560 100.0
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 3.4e-202 708.8 612 62.3
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 5.5e-200 701.4 612 60.9
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 1.4e-195 686.8 594 61.6
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 7.6e-194 681.0 614 60.6
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.3e-193 680.2 611 59.9
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.2e-193 679.5 611 59.7
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 2.2e-193 679.5 611 59.7
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.9e-192 676.4 613 60.0
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 4.2e-192 675.2 599 59.8
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 2.1e-191 672.9 615 59.0
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.7e-191 672.5 613 59.1
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 7.9e-191 671.0 614 59.9
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.8e-190 669.8 612 59.0
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 2.3e-190 669.5 612 59.8
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 5.1e-190 668.3 612 59.3
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 7.4e-189 664.5 624 57.4
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 4.8e-188 661.8 611 58.3
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 8.2e-188 661.0 615 58.7
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 8.2e-188 661.0 612 58.7
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 5.3e-187 658.3 610 57.2
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 9.0e-187 657.5 617 58.7
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 7.6e-186 654.4 613 56.9
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.3e-185 653.7 611 58.6
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.7e-185 653.3 612 57.8
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 2.2e-185 652.9 619 57.2
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 3.8e-185 652.1 612 56.5
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 6.5e-185 651.4 614 57.7
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.1e-184 650.6 615 57.7
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.4e-184 650.2 616 57.0
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 3.2e-184 649.0 613 58.2
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 7.2e-184 647.9 618 57.1
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.2e-183 647.1 614 57.3
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 4.6e-183 645.2 603 57.7
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 4.6e-183 645.2 617 56.9
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 6.1e-183 644.8 609 57.0
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 6.1e-183 644.8 614 55.9
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 6.1e-183 644.8 604 58.3
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 3.0e-182 642.5 610 57.4
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 6.7e-182 641.3 621 56.0
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 8.7e-182 641.0 612 57.2
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 1.1e-181 640.6 614 56.2
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.1e-181 640.6 604 57.3
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.5e-181 640.2 613 57.6
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.9e-181 639.8 608 58.7
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 3.3e-181 639.0 614 57.0
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 2.2e-180 636.3 620 56.0
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.8e-180 636.0 617 56.6
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 8.2e-180 634.4 595 56.8
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.1e-179 634.0 614 55.7
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 2.4e-179 632.9 605 56.9
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.5e-178 630.2 614 55.5
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 3.4e-178 629.0 609 55.8
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 3.8e-177 625.5 689 52.0
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.1e-176 624.0 594 56.1
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 3.2e-176 622.5 609 56.2
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 4.2e-176 622.1 625 56.0
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 5.5e-176 621.7 609 56.2
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 5.5e-176 621.7 614 56.4
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 7.2e-176 621.3 605 55.5
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 1.2e-175 620.5 609 56.2
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 1.6e-175 620.2 609 56.0
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.1e-175 619.8 614 56.0
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.1e-175 619.8 605 56.0
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 3.6e-175 619.0 608 55.9
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 3.6e-175 619.0 614 55.7
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 7.9e-175 617.8 612 55.7
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 1.1e-173 614.0 604 55.3
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 2.0e-173 613.2 607 55.7
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 2.0e-173 613.2 607 55.4
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.6e-173 612.8 613 55.1
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 1.4e-171 607.1 608 55.6
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.4e-171 607.1 608 54.6
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 6.9e-171 604.7 607 54.4
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 7.7e-170 601.3 607 54.5
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 5.5e-168 595.1 610 54.3
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 9.7e-165 584.3 572 57.2
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.8e-164 582.8 614 52.3
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 3.7e-164 582.4 744 46.1
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 6.3e-164 581.6 614 52.1
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 8.2e-164 581.3 568 57.7
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 4.1e-163 578.9 558 56.8
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 9.1e-163 577.8 564 55.3
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 5.9e-162 575.1 600 52.5
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.5e-160 570.5 590 53.4
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 6.1e-159 565.1 545 57.8
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 4.4e-157 558.9 546 54.6
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.3e-153 547.4 619 49.6
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 4.4e-149 532.3 501 58.3
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 8.3e-148 528.1 618 49.0
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 3.7e-140 502.7 678 43.8
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 8.6e-137 491.5 617 48.3
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 2.3e-129 466.8 511 51.1
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.1e-128 464.5 356 66.9
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 9.5e-128 461.5 355 65.9
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 2.2e-124 450.3 392 59.7
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 2.4e-123 446.8 508 50.8
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.9e-120 437.2 453 55.0
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.4e-117 426.4 668 42.4
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 9.9e-101 371.7 274 67.5
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 1.2e-93 348.2 390 50.8
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 4.5e-93 346.3 257 68.5
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.9e-92 343.6 257 68.1
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 5.4e-91 339.3 256 67.6
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 4.8e-87 326.2 232 71.6
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 4.0e-86 323.2 338 51.8
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 7.6e-85 318.9 243 65.4
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 5.6e-80 302.8 359 48.2
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 2.8e-79 300.4 641 33.5
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 6.9e-70 269.2 615 34.0
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 5.9e-69 266.2 318 47.5
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.5e-53 214.9 159 69.8
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 5.9e-45 186.4 217 48.4
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 1.6e-42 178.3 159 58.5
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 6.1e-42 176.4 156 56.4
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.0e-41 175.6 111 75.7
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-41 174.5 111 76.6
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 1.2e-40 172.2 110 75.5
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-39 168.3 111 73.0
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 5.5e-35 153.3 191 45.5
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 4.8e-31 140.2 93 72.0
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-25 121.3 100 61.0
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 4.0e-25 120.6 94 62.8
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.4e-22 112.1 134 50.0
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 4.1e-22 110.5 67 80.6
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 7.0e-22 109.8 389 27.0
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 8.6e-20 102.8 106 52.8
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-19 101.7 100 55.0
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 1.0e-17 95.9 96 50.0
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 4.0e-17 94.0 82 53.7
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-13 80.9 47 74.5
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-13 80.9 92 51.1
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 2.3e-12 78.2 79 48.1
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 2.3e-12 78.2 79 48.1
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-12 78.2 92 46.7
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 9.5e-11 72.8 55 65.5
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-10 71.6 41 75.6
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.8e-09 68.6 50 70.0
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 5.2e-09 67.0 45 75.6
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 4.4e-08 63.9 41 70.7
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 4.4e-08 63.9 40 72.5
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 2.2e-07 61.6 45 66.7
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-06 58.9 66 47.0
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 2.4e-06 58.2 41 65.9


User provided reference genes

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