Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12992 Utricularia gibba HOM05D004014 ORTHO05D034229 3.0e-99 365.2 179 100.0
MSTRG.22603 Avicennia marina HOM05D004014 ORTHO05D005890 8.0e-28 127.9 64 87.5
Medtr8g015660 Medicago truncatula HOM05D004014 ORTHO05D005890 3.9e-27 125.6 85 71.8
TPR.G24219 Trifolium pratense HOM05D004014 ORTHO05D005890 5.2e-27 125.2 63 88.9
SalBow6G0444 Salvia bowleyana HOM05D004014 ORTHO05D005890 6.7e-27 124.8 64 85.9
Migut.I01003 Erythranthe guttata HOM05D004014 ORTHO05D005890 1.1e-26 124.0 64 87.5
FAN05G5071 Fragaria x ananassa HOM05D004014 ORTHO05D005890 1.1e-26 124.0 67 85.1
Ca_23300_v3 Cicer arietinum L. HOM05D004014 ORTHO05D005890 1.5e-26 123.6 64 84.4
FAN02G0480 Fragaria x ananassa HOM05D004014 ORTHO05D005890 1.5e-26 123.6 84 72.6
FAN09G0688 Fragaria x ananassa HOM05D004014 ORTHO05D005890 1.5e-26 123.6 72 77.8
Lj3g0023335 Lotus japonicus HOM05D004014 ORTHO05D005890 2.0e-26 123.2 64 85.9
CiPaw.02G141900 Carya illinoinensis HOM05D004014 ORTHO05D005890 3.3e-26 122.5 64 84.4
Lsat_1_v5_gn_1_36421 Lactuca sativa HOM05D004014 ORTHO05D005890 3.3e-26 122.5 86 67.4
Atru.chr1.3637 Acer truncatum HOM05D004014 ORTHO05D005890 5.7e-26 121.7 63 85.7
Atru.chr8.1187 Acer truncatum HOM05D004014 ORTHO05D005890 5.7e-26 121.7 63 85.7
arahy.Tifrunner.gnm1.ann1.SBEJ10 Arachis hypogaea HOM05D004014 ORTHO05D005890 5.7e-26 121.7 64 84.4
arahy.Tifrunner.gnm1.ann1.ZVXK34 Arachis hypogaea HOM05D004014 ORTHO05D005890 5.7e-26 121.7 64 84.4
DCAR_007610 Daucus carota HOM05D004014 ORTHO05D005890 7.4e-26 121.3 65 83.1
FvH4_6g32980 Fragaria vesca HOM05D004014 ORTHO05D005890 7.4e-26 121.3 63 87.3
FAN14G2620 Fragaria x ananassa HOM05D004014 ORTHO05D005890 7.4e-26 121.3 63 87.3
Haze_15924 Corylus avellana HOM05D004014 ORTHO05D005890 9.7e-26 120.9 66 80.3
Lalb_Chr25g0280531 Lupinus albus HOM05D004014 ORTHO05D005890 9.7e-26 120.9 63 85.7
MD09G1195900 Malus domestica HOM05D004014 ORTHO05D005890 9.7e-26 120.9 64 85.9
RcHm_v2.0_Chr2g0142531 Rosa chinensis HOM05D004014 ORTHO05D005890 9.7e-26 120.9 64 84.4
C03p90260 Brassica napus HOM05D004014 ORTHO05D005890 1.3e-25 120.6 82 70.7
BolC3t21348H Brassica oleracea HOM05D004014 ORTHO05D005890 1.3e-25 120.6 82 70.7
CANSAT56G3696 Cannabis sativa HOM05D004014 ORTHO05D005890 1.3e-25 120.6 64 84.4
Ciclev10025482m.g Citrus clementina HOM05D004014 ORTHO05D005890 1.3e-25 120.6 63 85.7
Prupe.3G052400 Prunus persica HOM05D004014 ORTHO05D005890 1.3e-25 120.6 64 82.8
HanXRQChr05g0140121 Helianthus annuus HOM05D004014 ORTHO05D005890 1.7e-25 120.2 64 81.2
Peaxi162Scf00177g00215 Petunia axillaris HOM05D004014 ORTHO05D005890 1.7e-25 120.2 64 81.2
Thecc.06G108100 Theobroma cacao HOM05D004014 ORTHO05D005890 1.7e-25 120.2 63 85.7
TWI79G1365 Tripterygium wilfordii HOM05D004014 ORTHO05D005890 1.7e-25 120.2 79 70.9
DCAR_007611 Daucus carota HOM05D004014 ORTHO05D005890 2.2e-25 119.8 64 82.8
HanXRQChr09g0276341 Helianthus annuus HOM05D004014 ORTHO05D005890 2.2e-25 119.8 64 82.8
Lsat_1_v5_gn_4_95921 Lactuca sativa HOM05D004014 ORTHO05D005890 2.2e-25 119.8 64 84.4
Phvul.010G141700 Phaseolus vulgaris HOM05D004014 ORTHO05D005890 2.2e-25 119.8 64 82.8
HPP92_005519 Vanilla planifolia HOM05D004014 ORTHO05D005890 2.2e-25 119.8 64 84.4
VMungo0331G1129 Vigna mungo HOM05D004014 ORTHO05D005890 2.2e-25 119.8 64 82.8
MD17G1176500 Malus domestica HOM05D004014 ORTHO05D005890 2.8e-25 119.4 64 84.4
Sed0015765 Sechium edule HOM05D004014 ORTHO05D005890 2.8e-25 119.4 78 71.8
Actinidia39122 Actinidia chinensis HOM05D004014 ORTHO05D005890 3.7e-25 119.0 64 84.4
A08p02550 Brassica napus HOM05D004014 ORTHO05D005890 3.7e-25 119.0 64 81.2
BraA08t32295Z Brassica rapa HOM05D004014 ORTHO05D005890 3.7e-25 119.0 64 81.2
CSS0031715 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D005890 3.7e-25 119.0 64 84.4
Dinv30396 Davidia involucrata HOM05D004014 ORTHO05D005890 3.7e-25 119.0 64 84.4
Duzib192G0196 Durio zibethinus HOM05D004014 ORTHO05D005890 3.7e-25 119.0 63 84.1
Thhalv10011383m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 3.7e-25 119.0 64 81.2
PGR102G0116 Punica granatum HOM05D004014 ORTHO05D005890 3.7e-25 119.0 63 82.5
BcaC08g43331 Brassica carinata HOM05D004014 ORTHO05D005890 4.8e-25 118.6 64 81.2
CAN.G12.3 Capsicum annuum HOM05D004014 ORTHO05D005890 4.8e-25 118.6 69 75.4
Psat4g193640 Pisum sativum HOM05D004014 ORTHO05D005890 4.8e-25 118.6 63 84.1
SGA_v2.0_scaffold71G23744 Striga asiatica HOM05D004014 ORTHO05D005890 4.8e-25 118.6 60 88.3
CiPaw.01G227100 Carya illinoinensis HOM05D004014 ORTHO05D005890 6.3e-25 118.2 64 82.8
Solyc12g044740.2 Solanum lycopersicum HOM05D004014 ORTHO05D005890 6.3e-25 118.2 64 79.7
Sopen12g022890 Solanum pennellii HOM05D004014 ORTHO05D005890 6.3e-25 118.2 64 79.7
BcaC01g01290 Brassica carinata HOM05D004014 ORTHO05D005890 8.2e-25 117.9 64 79.7
Cpa.g.sc131.36 Carica papaya HOM05D004014 ORTHO05D005890 8.2e-25 117.9 63 84.1
Sabra01G0156400 Salix brachista HOM05D004014 ORTHO05D005890 8.2e-25 117.9 64 82.8
Sabra03G0029500 Salix brachista HOM05D004014 ORTHO05D005890 8.2e-25 117.9 66 78.8
Sc12g0009850 Simmondsia chinensis HOM05D004014 ORTHO05D005890 8.2e-25 117.9 64 82.8
vmacro16995 Vaccinium macrocarpon HOM05D004014 ORTHO05D005890 8.2e-25 117.9 64 82.8
Actinidia09020 Actinidia chinensis HOM05D004014 ORTHO05D005890 1.1e-24 117.5 64 84.4
Duzib160G0604 Durio zibethinus HOM05D004014 ORTHO05D005890 1.1e-24 117.5 63 84.1
Manes.11G028700 Manihot esculenta HOM05D004014 ORTHO05D005890 1.1e-24 117.5 64 81.2
Nn8g38926 Nelumbo nucifera HOM05D004014 ORTHO05D005890 1.1e-24 117.5 64 82.8
QL05p015866 Quercus lobata HOM05D004014 ORTHO05D005890 1.1e-24 117.5 63 84.1
SMO307G0086 Selaginella moellendorffii HOM05D004014 ORTHO05D005890 1.1e-24 117.5 63 82.5
Glyma.07G012300 Glycine max HOM05D004014 ORTHO05D005890 1.4e-24 117.1 64 78.1
SGA_v2.0_scaffold45G16993 Striga asiatica HOM05D004014 ORTHO05D005890 1.4e-24 117.1 60 86.7
GSVIVG01016888001 Vitis vinifera HOM05D004014 ORTHO05D005890 1.4e-24 117.1 64 84.4
Dinv37931 Davidia involucrata HOM05D004014 ORTHO05D005890 1.8e-24 116.7 64 82.8
Gohir.A09G080500 Gossypium hirsutum HOM05D004014 ORTHO05D005890 1.8e-24 116.7 63 82.5
Gohir.D09G080501 Gossypium hirsutum HOM05D004014 ORTHO05D005890 1.8e-24 116.7 63 82.5
Gorai.006G096100 Gossypium raimondii HOM05D004014 ORTHO05D005890 1.8e-24 116.7 63 82.5
ClCG09G000550 Citrullus lanatus HOM05D004014 ORTHO05D005890 2.4e-24 116.3 78 67.9
Potri.003G033700 Populus trichocarpa HOM05D004014 ORTHO05D005890 2.4e-24 116.3 64 79.7
Rhsim12G0204700 Rhododendron simsii HOM05D004014 ORTHO05D005890 2.4e-24 116.3 64 82.8
Nitab4.5_0003218g0070 Nicotiana tabacum HOM05D004014 ORTHO05D005890 3.1e-24 115.9 64 79.7
Nitab4.5_0006642g0010 Nicotiana tabacum HOM05D004014 ORTHO05D005890 3.1e-24 115.9 64 79.7
TAR626G0060 Trochodendron aralioides HOM05D004014 ORTHO05D005890 3.1e-24 115.9 64 81.2
BcaB07g33627 Brassica carinata HOM05D004014 ORTHO05D005890 4.1e-24 115.5 64 79.7
A06p02300 Brassica napus HOM05D004014 ORTHO05D005890 5.3e-24 115.2 62 80.6
C06p06860 Brassica napus HOM05D004014 ORTHO05D005890 5.3e-24 115.2 62 80.6
BolC6t35793H Brassica oleracea HOM05D004014 ORTHO05D005890 5.3e-24 115.2 62 80.6
BraA06t23436Z Brassica rapa HOM05D004014 ORTHO05D005890 5.3e-24 115.2 62 80.6
MELO3C024402.2 Cucumis melo HOM05D004014 ORTHO05D005890 5.3e-24 115.2 64 79.7
CsaV3_7G034900 Cucumis sativus L. HOM05D004014 ORTHO05D005890 5.3e-24 115.2 64 79.7
ECA232G4630 Erigeron canadensis HOM05D004014 ORTHO05D005890 5.3e-24 115.2 65 83.1
Lalb_Chr04g0263081 Lupinus albus HOM05D004014 ORTHO05D005890 5.3e-24 115.2 63 82.5
Potri.001G197400 Populus trichocarpa HOM05D004014 ORTHO05D005890 5.3e-24 115.2 64 81.2
Lj5A49T39 Lonicera japonica HOM05D004014 ORTHO05D005890 7.0e-24 114.8 68 79.4
Sed0015232 Sechium edule HOM05D004014 ORTHO05D005890 9.1e-24 114.4 63 81.0
Glyma.08G195900 Glycine max HOM05D004014 ORTHO05D005890 1.2e-23 114.0 64 76.6
Cc04_g02170 Coffea canephora HOM05D004014 ORTHO05D005890 1.6e-23 113.6 66 75.8
COL.COLO4_30610 Corchorus olitorius HOM05D004014 ORTHO05D005890 1.6e-23 113.6 60 83.3
Sp3g19320 Schrenkiella parvula HOM05D004014 ORTHO05D005890 1.6e-23 113.6 64 75.0
ATR0789G134 Amborella trichopoda HOM05D004014 ORTHO05D005890 2.0e-23 113.2 64 78.1
Aqoxy7G01294 Aquilegia oxysepala HOM05D004014 ORTHO05D005890 2.6e-23 112.8 64 78.1
AL3G35320 Arabidopsis lyrata HOM05D004014 ORTHO05D005890 3.5e-23 112.5 64 75.0
Carub.0003s2129 Capsella rubella HOM05D004014 ORTHO05D005890 3.5e-23 112.5 64 75.0
CDE07G0617 Ceratophyllum demersum HOM05D004014 ORTHO05D005890 3.5e-23 112.5 64 81.2
SEGI_22647 Sequoiadendron giganteum HOM05D004014 ORTHO05D005890 3.5e-23 112.5 67 76.1
AT3G21280 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 4.5e-23 112.1 64 75.0
Carub.0001s4058 Capsella rubella HOM05D004014 ORTHO05D005890 5.9e-23 111.7 64 76.6
CARHR041870 Cardamine hirsuta HOM05D004014 ORTHO05D005890 5.9e-23 111.7 64 75.0
CSS0027279 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D005890 7.7e-23 111.3 61 80.3
Eucgr.F03104 Eucalyptus grandis HOM05D004014 ORTHO05D005890 7.7e-23 111.3 63 79.4
Mapoly0134s0030 Marchantia polymorpha HOM05D004014 ORTHO05D005890 1.0e-22 110.9 64 79.7
EL10Ac2g03344 Beta vulgaris HOM05D004014 ORTHO05D005890 1.3e-22 110.5 63 76.2
MBI04_g06225_MAGBIO Magnolia biondii HOM05D004014 ORTHO05D005890 1.3e-22 110.5 60 81.7
Zm00001eb162410 Zea mays HOM05D004014 ORTHO05D005890 1.3e-22 110.5 64 78.1
AT1G51710 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 2.2e-22 109.8 64 73.4
Thhalv10020636m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 2.2e-22 109.8 64 73.4
THA.LOC104805917 Tarenaya hassleriana HOM05D004014 ORTHO05D005890 2.2e-22 109.8 64 75.0
Zm00001eb356540 Zea mays HOM05D004014 ORTHO05D005890 2.2e-22 109.8 64 78.1
Os01g0550100 Oryza sativa ssp. japonica HOM05D004014 ORTHO05D005890 5.0e-22 108.6 64 76.6
Ah.10g033570 Amaranthus hybridus HOM05D004014 ORTHO05D005890 8.5e-22 107.8 63 71.4
AL1G59650 Arabidopsis lyrata HOM05D004014 ORTHO05D005890 8.5e-22 107.8 64 71.9
THA.LOC104817933 Tarenaya hassleriana HOM05D004014 ORTHO05D005890 2.5e-21 106.3 61 73.8
AUR62037625 Chenopodium quinoa HOM05D004014 ORTHO05D005890 9.4e-21 104.4 63 73.0
Gohir.A10G062050 Gossypium hirsutum HOM05D004014 ORTHO05D005890 9.4e-21 104.4 63 74.6
PSO063G2767 Papaver somniferum HOM05D004014 ORTHO05D005890 9.4e-21 104.4 64 76.6
PSO832G1047 Papaver somniferum HOM05D004014 ORTHO05D005890 9.4e-21 104.4 64 76.6
AUR62041068 Chenopodium quinoa HOM05D004014 ORTHO05D005890 1.2e-20 104.0 63 73.0
Pp3c7_7460 Physcomitrium patens HOM05D004014 ORTHO05D005890 1.2e-20 104.0 64 76.6
Aa31LG8G7980 Aethionema arabicum HOM05D004014 ORTHO05D005890 2.7e-20 102.8 61 70.5
CBR_g3328 Chara braunii HOM05D004014 ORTHO05D005890 4.7e-20 102.1 70 67.1
CiPaw.05G194700 Carya illinoinensis HOM05D004014 ORTHO05D034229 1.4e-19 100.5 70 67.1
Oeu039979.1 Olea europaea HOM05D004014 ORTHO05D005890 3.0e-19 99.4 53 81.1
Hund00756 Selenicereus undatus HOM05D004014 ORTHO05D005890 4.8e-17 92.0 64 70.3
MELO3C019176.2 Cucumis melo HOM05D004014 ORTHO05D034229 2.9e-14 82.8 49 79.6
Cre17.g726050 Chlamydomonas reinhardtii HOM05D004014 ORTHO05D005890 8.5e-14 81.3 66 54.5
PRCOL_00000017 Prasinoderma coloniale HOM05D004014 ORTHO05D005890 2.2e-09 66.6 63 52.4
Haze_26391 Corylus avellana HOM05D004014 ORTHO05D005890 3.5e-07 59.3 63 46.0
MCO05G115 Micromonas commoda HOM05D004014 ORTHO05D005890 2.3e-06 56.6 77 42.9


User provided reference genes

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