Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 5.4e-119 431.0 221 100.0
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 5.6e-100 367.9 221 82.4
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.8e-93 346.3 221 78.7
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 1.9e-92 342.8 221 78.3
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.9e-92 342.8 221 77.4
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 1.0e-85 320.5 221 72.4
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.3e-85 320.1 245 67.3
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 4.1e-82 308.5 213 72.3
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 6.9e-82 307.8 221 72.9
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 7.7e-81 304.3 232 68.1
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.0e-80 303.9 224 68.8
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 2.9e-80 302.4 224 68.8
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 2.9e-80 302.4 224 68.8
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.2e-78 297.0 227 67.8
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 6.1e-78 294.7 232 65.5
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 1.4e-77 293.5 225 67.6
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.8e-75 285.8 222 66.7
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 4.8e-75 285.0 220 65.5
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.6e-73 279.3 216 67.1
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 1.3e-72 276.9 204 68.6
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.7e-72 276.6 216 65.3
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 2.1e-70 269.6 224 63.8
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 4.7e-70 268.5 216 63.9
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 6.1e-70 268.1 222 61.3
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.4e-69 266.9 224 64.3
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 8.8e-69 264.2 219 63.0
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.5e-68 263.5 216 62.5
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 3.3e-68 262.3 227 60.8
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 3.3e-68 262.3 206 65.5
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 3.3e-68 262.3 225 61.8
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 4.4e-68 261.9 209 64.1
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 4.8e-67 258.5 223 60.1
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 5.3e-66 255.0 212 64.6
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 9.1e-66 254.2 202 64.4
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 1.2e-65 253.8 210 65.2
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 2.0e-65 253.1 221 59.7
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 2.6e-65 252.7 224 59.4
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 5.9e-65 251.5 223 59.2
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.3e-64 250.4 218 61.9
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 6.5e-64 248.1 232 56.5
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 8.5e-64 247.7 202 62.9
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.1e-63 247.3 230 56.5
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 1.1e-63 247.3 217 59.9
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 3.2e-63 245.7 235 57.0
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 4.2e-63 245.4 220 59.5
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 7.2e-63 244.6 218 60.6
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 2.7e-62 242.7 188 66.0
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.7e-62 241.9 232 56.5
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.4e-61 240.4 218 59.6
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 3.0e-61 239.2 222 55.0
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 4.0e-61 238.8 222 54.5
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 4.0e-61 238.8 184 65.8
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 5.2e-61 238.4 230 55.2
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 2.6e-60 236.1 266 50.4
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 4.4e-60 235.3 208 58.2
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 7.5e-60 234.6 216 54.6
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 1.3e-59 233.8 227 55.5
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 4.8e-59 231.9 216 54.2
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 4.8e-59 231.9 224 54.0
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 6.3e-59 231.5 224 54.9
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 6.3e-59 231.5 210 56.7
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 8.2e-59 231.1 220 57.3
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 4.1e-58 228.8 218 56.4
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 5.3e-58 228.4 210 54.8
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 9.1e-58 227.6 210 55.7
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 9.1e-58 227.6 210 55.2
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.0e-57 226.5 210 55.7
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.0e-57 226.5 211 57.3
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 5.9e-57 224.9 203 56.2
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.7e-56 223.4 211 55.9
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.2e-56 223.0 233 50.6
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 2.9e-56 222.6 210 54.3
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 2.9e-56 222.6 210 55.2
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 2.9e-56 222.6 210 55.2
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 6.5e-56 221.5 181 60.8
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.5e-55 220.3 230 51.7
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 4.2e-55 218.8 200 59.0
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 9.4e-55 217.6 204 55.9
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.2e-54 217.2 232 53.0
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.0e-53 214.2 215 52.6
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 1.4e-53 213.8 231 52.4
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 3.0e-53 212.6 231 51.5
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 3.0e-53 212.6 221 55.2
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 6.8e-53 211.5 218 51.8
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 8.8e-53 211.1 231 51.1
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.4e-52 209.1 204 58.3
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 4.4e-52 208.8 218 52.3
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 4.4e-52 208.8 219 51.1
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 9.8e-52 207.6 165 64.8
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.3e-51 207.2 166 63.3
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.3e-51 207.2 314 42.7
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 2.2e-51 206.5 190 57.9
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.8e-51 206.1 175 60.0
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 2.8e-51 206.1 239 48.1
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 3.7e-51 205.7 228 49.1
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 4.1e-50 202.2 224 49.6
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 5.4e-50 201.8 212 52.8
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 5.4e-50 201.8 220 48.6
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.6e-49 200.3 158 63.3
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.7e-49 199.5 217 47.9
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 5.9e-49 198.4 220 49.1
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.0e-48 197.6 257 47.1
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 2.2e-48 196.4 210 55.7
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 5.0e-48 195.3 351 37.3
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.6e-46 189.1 264 45.1
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 8.8e-45 184.5 219 45.2
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.2e-44 184.1 164 61.6
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 9.8e-44 181.0 146 65.8
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 8.3e-43 177.9 142 64.1
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.2e-41 174.1 187 48.7
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.6e-41 173.7 174 52.3
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 2.9e-40 169.5 250 42.8
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.2e-38 164.1 131 62.6
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 8.0e-38 161.4 172 56.4
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 4.0e-37 159.1 163 55.8
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.2e-35 153.3 122 63.9
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.4e-34 150.6 210 37.1
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 1.6e-33 147.1 114 63.2
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.6e-30 136.0 144 52.1
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 7.5e-28 128.3 162 46.9
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 9.8e-28 127.9 225 38.2
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 4.1e-26 122.5 117 55.6
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.5e-23 113.2 163 46.0
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.5e-23 113.2 216 36.6
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 1.6e-22 110.5 149 42.3
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 1.1e-21 107.8 220 34.5
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.1e-21 106.3 91 62.6
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 9.8e-20 101.3 96 52.1
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 3.5e-17 92.8 223 32.7
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 1.7e-16 90.5 219 28.8
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 8.6e-16 88.2 100 50.0
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 1.6e-14 84.0 99 48.5
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.4e-13 80.9 174 36.8
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 8.9e-13 78.2 77 55.8
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 8.9e-13 78.2 77 55.8
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 5.8e-12 75.5 84 53.6
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 7.6e-12 75.1 66 62.1
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 2.2e-11 73.6 212 28.8
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 3.8e-11 72.8 58 65.5
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 7.1e-10 68.6 89 44.9
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.3e-08 64.3 68 52.9
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 1.1e-07 61.2 64 50.0
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 1.5e-07 60.8 79 43.0
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 4.3e-07 59.3 63 49.2
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.8e-06 56.6 63 39.7


User provided reference genes

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