Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g11945 Utricularia gibba HOM05D000042 ORTHO05D000028 7.0e-41 170.2 89 100.0
SGA_v2.0_scaffold2G01094 Striga asiatica HOM05D000042 ORTHO05D000028 4.7e-13 77.8 105 44.8
MSTRG.8432 Avicennia marina HOM05D000042 ORTHO05D000028 8.0e-13 77.0 107 43.9
MSTRG.27149 Avicennia marina HOM05D000042 ORTHO05D000028 1.4e-12 76.3 104 46.2
Cc02_g03570 Coffea canephora HOM05D000042 ORTHO05D000028 7.5e-11 70.5 103 41.7
MSTRG.8779 Avicennia marina HOM05D000042 ORTHO05D000028 1.3e-10 69.7 104 46.2
Migut.F01157 Erythranthe guttata HOM05D000042 ORTHO05D000028 1.7e-10 69.3 111 42.3
Migut.F00397 Erythranthe guttata HOM05D000042 ORTHO05D000028 3.7e-10 68.2 107 39.3
SGA_v2.0_scaffold221G42746 Striga asiatica HOM05D000042 ORTHO05D000028 8.3e-10 67.0 102 42.2
Ciclev10006217m.g Citrus clementina HOM05D000042 ORTHO05D000028 1.8e-09 65.9 104 39.4
Gohir.A11G008900 Gossypium hirsutum HOM05D000042 ORTHO05D000028 7.0e-09 63.9 92 41.3
Gorai.007G009800 Gossypium raimondii HOM05D000042 ORTHO05D000028 7.0e-09 63.9 92 41.3
Manes.14G030800 Manihot esculenta HOM05D000042 ORTHO05D000028 7.0e-09 63.9 90 43.3
Nitab4.5_0000832g0050 Nicotiana tabacum HOM05D000042 ORTHO05D000028 9.2e-09 63.5 115 35.7
vmacro06739 Vaccinium macrocarpon HOM05D000042 ORTHO05D000028 2.7e-08 62.0 102 40.2
Actinidia10764 Actinidia chinensis HOM05D000042 ORTHO05D000028 4.5e-08 61.2 98 40.8
AL8G38970 Arabidopsis lyrata HOM05D000042 ORTHO05D000028 4.5e-08 61.2 105 41.0
Hma1.2p1_0488F.1_g163960 Hydrangea macrophylla HOM05D000042 ORTHO05D000028 4.5e-08 61.2 89 41.6
Nn6g34316 Nelumbo nucifera HOM05D000042 ORTHO05D000028 7.8e-08 60.5 107 39.3
Sed0009958 Sechium edule HOM05D000042 ORTHO05D000028 1.7e-07 59.3 107 37.4
GSVIVG01018446001 Vitis vinifera HOM05D000042 ORTHO05D000028 1.7e-07 59.3 102 35.3
BraA06t25835Z Brassica rapa HOM05D000042 ORTHO05D000028 2.3e-07 58.9 104 40.4
CiPaw.01G258100 Carya illinoinensis HOM05D000042 ORTHO05D000028 2.3e-07 58.9 107 33.6
TWI14G1188 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 2.3e-07 58.9 97 38.1
Sp2g25340 Schrenkiella parvula HOM05D000042 ORTHO05D000028 2.9e-07 58.5 104 39.4
C02p61960 Brassica napus HOM05D000042 ORTHO05D000028 3.9e-07 58.2 104 39.4
BraA02t09139Z Brassica rapa HOM05D000042 ORTHO05D000028 3.9e-07 58.2 104 39.4
Potri.003G119700 Populus trichocarpa HOM05D000042 ORTHO05D000028 3.9e-07 58.2 101 36.6
BolC2t12257H Brassica oleracea HOM05D000042 ORTHO05D000028 5.0e-07 57.8 104 38.5
MSTRG.113 Avicennia marina HOM05D000042 ORTHO05D000028 6.6e-07 57.4 111 38.7
EL10Ac1g00953 Beta vulgaris HOM05D000042 ORTHO05D000028 6.6e-07 57.4 92 37.0
Solyc06g150109.1 Solanum lycopersicum HOM05D000042 ORTHO05D000028 6.6e-07 57.4 103 37.9
CiPaw.03G100400 Carya illinoinensis HOM05D000042 ORTHO05D000028 8.6e-07 57.0 100 36.0
PGR142G3692 Punica granatum HOM05D000042 ORTHO05D000028 8.6e-07 57.0 107 37.4
THA.LOC104818270 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 8.6e-07 57.0 103 35.0
Thecc.03G167100 Theobroma cacao HOM05D000042 ORTHO05D000028 8.6e-07 57.0 104 37.5
Ah.05g175750 Amaranthus hybridus HOM05D000042 ORTHO05D000028 1.1e-06 56.6 105 39.0
ECA232G1657 Erigeron canadensis HOM05D000042 ORTHO05D000028 1.1e-06 56.6 103 35.0
FAN10G4133 Fragaria x ananassa HOM05D000042 ORTHO05D000028 1.1e-06 56.6 108 32.4
Gohir.A11G083700 Gossypium hirsutum HOM05D000042 ORTHO05D000028 1.5e-06 56.2 104 34.6
Atru.chr1.563 Acer truncatum HOM05D000042 ORTHO05D000028 1.9e-06 55.8 101 37.6
TAR636G2012 Trochodendron aralioides HOM05D000042 ORTHO05D000028 1.9e-06 55.8 105 35.2
Cpa.g.sc29.35 Carica papaya HOM05D000042 ORTHO05D000028 2.5e-06 55.5 109 37.6
FAN10G3806 Fragaria x ananassa HOM05D000042 ORTHO05D000028 2.5e-06 55.5 108 32.4
PGR142G4047 Punica granatum HOM05D000042 ORTHO05D000028 2.5e-06 55.5 107 37.4
Carub.0008s2284 Capsella rubella HOM05D000042 ORTHO05D000028 3.3e-06 55.1 104 36.5
AUR62017316 Chenopodium quinoa HOM05D000042 ORTHO05D000028 3.3e-06 55.1 105 37.1
Duzib084G0633 Durio zibethinus HOM05D000042 ORTHO05D000028 3.3e-06 55.1 101 37.6
Glyma.17G132700 Glycine max HOM05D000042 ORTHO05D000028 3.3e-06 55.1 99 38.4
Manes.02G030100 Manihot esculenta HOM05D000042 ORTHO05D000028 3.3e-06 55.1 107 34.6
RcHm_v2.0_Chr1g0351691 Rosa chinensis HOM05D000042 ORTHO05D000028 3.3e-06 55.1 108 32.4
SGA_v2.0_scaffold153G37050 Striga asiatica HOM05D000042 ORTHO05D000028 3.3e-06 55.1 94 35.1
CARHR275950 Cardamine hirsuta HOM05D000042 ORTHO05D027111 4.3e-06 54.7 101 39.6
CiPaw.02G164800 Carya illinoinensis HOM05D000042 ORTHO05D000028 4.3e-06 54.7 99 34.3
AUR62010573 Chenopodium quinoa HOM05D000042 ORTHO05D000028 4.3e-06 54.7 104 39.4
Glyma.18G224500 Glycine max HOM05D000042 ORTHO05D000028 4.3e-06 54.7 103 33.0
Gohir.D11G008200 Gossypium hirsutum HOM05D000042 ORTHO05D000028 4.3e-06 54.7 54 46.3
Nitab4.5_0000599g0010 Nicotiana tabacum HOM05D000042 ORTHO05D000028 4.3e-06 54.7 135 29.6
Peaxi162Scf01178g00019 Petunia axillaris HOM05D000042 ORTHO05D000028 4.3e-06 54.7 109 30.3
Sabra01G0085900 Salix brachista HOM05D000042 ORTHO05D000028 4.3e-06 54.7 101 36.6
Hund27334 Selenicereus undatus HOM05D000042 ORTHO05D000028 4.3e-06 54.7 104 34.6
Sopen03g002820 Solanum pennellii HOM05D000042 ORTHO05D000028 4.3e-06 54.7 121 28.9
THA.LOC104824845 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 4.3e-06 54.7 106 34.0
EL10Ac5g12708 Beta vulgaris HOM05D000042 ORTHO05D000028 5.6e-06 54.3 94 40.4
BolC3t14273H Brassica oleracea HOM05D000042 ORTHO05D000028 5.6e-06 54.3 94 37.2
ClCG01G005350 Citrullus lanatus HOM05D000042 ORTHO05D000028 5.6e-06 54.3 107 36.4
Glyma.03G019300 Glycine max HOM05D000042 ORTHO05D000028 5.6e-06 54.3 90 38.9
Sc22g0000390 Simmondsia chinensis HOM05D000042 ORTHO05D000028 5.6e-06 54.3 56 46.4
Solyc03g006830.3 Solanum lycopersicum HOM05D000042 ORTHO05D000028 5.6e-06 54.3 119 31.1
Sopen12g029050 Solanum pennellii HOM05D000042 ORTHO05D000028 5.6e-06 54.3 103 34.0
Atru.chr1.557 Acer truncatum HOM05D000042 ORTHO05D000028 7.3e-06 53.9 101 35.6
Atru.chr1.561 Acer truncatum HOM05D000042 ORTHO05D000028 7.3e-06 53.9 101 35.6
Atru.chr9.1506 Acer truncatum HOM05D000042 ORTHO05D000028 7.3e-06 53.9 101 35.6
AL7G30570 Arabidopsis lyrata HOM05D000042 ORTHO05D000028 7.3e-06 53.9 60 48.3
Cfa001816 Carpinus fangiana HOM05D000042 ORTHO05D000028 7.3e-06 53.9 103 34.0
Cc02_g37000 Coffea canephora HOM05D000042 ORTHO05D000028 7.3e-06 53.9 107 31.8
Duzib205G1573 Durio zibethinus HOM05D000042 ORTHO05D000028 7.3e-06 53.9 104 36.5
FAN03G0429 Fragaria x ananassa HOM05D000042 ORTHO05D000028 7.3e-06 53.9 108 31.5
Gohir.D11G087800 Gossypium hirsutum HOM05D000042 ORTHO05D000028 7.3e-06 53.9 104 33.7
Gorai.007G093800 Gossypium raimondii HOM05D000042 ORTHO05D000028 7.3e-06 53.9 111 32.4
Lalb_Chr10g0097631 Lupinus albus HOM05D000042 ORTHO05D000028 7.3e-06 53.9 107 32.7
Medtr4g102530 Medicago truncatula HOM05D000042 ORTHO05D000028 7.3e-06 53.9 99 35.4
Nitab4.5_0004622g0020 Nicotiana tabacum HOM05D000113 ORTHO05D002571 7.3e-06 53.9 93 36.6
Psat4g198000 Pisum sativum HOM05D000042 ORTHO05D000028 7.3e-06 53.9 105 35.2
Sed0019121 Sechium edule HOM05D000042 ORTHO05D000028 7.3e-06 53.9 103 36.9
Hund14707 Selenicereus undatus HOM05D000703 ORTHO05D000633 7.3e-06 53.9 88 39.8
Aqoxy5G03961 Aquilegia oxysepala HOM05D000042 ORTHO05D000028 9.5e-06 53.5 106 30.2
BcaC01g06141 Brassica carinata HOM05D000042 ORTHO05D000028 9.5e-06 53.5 94 36.2
A06p28870 Brassica napus HOM05D000042 ORTHO05D027111 9.5e-06 53.5 96 36.5
FvH4_7g12700 Fragaria vesca HOM05D000042 ORTHO05D000028 9.5e-06 53.5 108 31.5
FAN01G1844 Fragaria x ananassa HOM05D000042 ORTHO05D000028 9.5e-06 53.5 106 32.1
FAN06G0641 Fragaria x ananassa HOM05D000042 ORTHO05D000028 9.5e-06 53.5 108 31.5
FAN06G3572 Fragaria x ananassa HOM05D000042 ORTHO05D000028 9.5e-06 53.5 108 31.5
THA.LOC104806360 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 9.5e-06 53.5 52 51.9


User provided reference genes

Program Settings