Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 0.0e+00 1115.1 575 100.0
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 2.6e-189 666.0 587 63.2
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 6.3e-159 565.1 602 55.8
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 6.9e-150 535.0 584 55.1
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 3.4e-149 532.7 597 54.4
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 4.5e-149 532.3 593 55.3
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 2.9e-148 529.6 584 54.8
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 2.9e-148 529.6 607 52.9
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 2.5e-147 526.6 602 53.7
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 5.1e-145 518.8 593 53.5
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 1.5e-144 517.3 599 54.3
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 1.5e-144 517.3 597 53.4
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 7.4e-144 515.0 597 53.3
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.7e-143 513.8 593 54.3
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.7e-143 513.8 594 54.0
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 6.3e-143 511.9 586 54.1
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.4e-142 510.8 568 55.5
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 2.4e-142 510.0 568 54.6
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.1e-142 509.2 588 53.4
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 4.1e-142 509.2 619 51.5
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 7.0e-142 508.4 590 52.9
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 9.1e-142 508.1 571 53.9
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 2.0e-141 506.9 602 53.7
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 2.0e-141 506.9 615 51.9
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.0e-141 506.9 588 53.6
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 1.0e-140 504.6 591 53.0
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 1.3e-140 504.2 588 52.0
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 1.3e-140 504.2 588 52.4
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 1.3e-140 504.2 583 53.0
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 2.2e-140 503.4 594 53.5
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 2.9e-140 503.1 592 52.5
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 3.8e-140 502.7 609 52.4
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 5.0e-140 502.3 595 52.6
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 8.5e-140 501.5 595 52.4
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 2.1e-138 496.9 625 50.7
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.6e-138 496.1 598 53.2
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 1.8e-137 493.8 601 51.6
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 6.7e-137 491.9 611 51.9
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 6.7e-137 491.9 593 52.6
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 8.8e-137 491.5 597 52.3
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 8.8e-137 491.5 603 50.9
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 2.6e-136 490.0 586 53.2
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 7.5e-136 488.4 627 49.8
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 9.7e-136 488.0 627 49.9
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 2.2e-135 486.9 599 51.3
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 2.4e-134 483.4 603 51.6
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 7.7e-133 478.4 591 51.6
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 1.3e-132 477.6 608 49.3
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 5.0e-132 475.7 614 50.2
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 4.2e-131 472.6 591 50.8
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 5.5e-131 472.2 604 51.0
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 1.6e-130 470.7 602 51.7
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.0e-129 468.0 588 50.3
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 2.3e-129 466.8 590 49.7
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 4.0e-129 466.1 543 52.1
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 6.8e-129 465.3 595 50.6
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 2.6e-128 463.4 613 49.1
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 4.4e-128 462.6 585 49.9
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 5.7e-128 462.2 607 48.8
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.2e-127 460.3 509 53.4
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 2.8e-127 459.9 593 51.4
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 1.8e-126 457.2 588 49.1
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 2.4e-126 456.8 581 50.8
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 3.1e-126 456.4 601 49.1
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 4.1e-126 456.1 590 49.3
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 2.7e-125 453.4 625 48.2
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 7.7e-125 451.8 586 49.3
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 7.7e-125 451.8 621 48.6
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 1.0e-124 451.4 586 49.5
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 8.5e-124 448.4 600 49.2
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 1.1e-123 448.0 618 48.5
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 2.1e-122 443.7 589 50.9
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 1.8e-121 440.7 592 49.3
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 7.5e-120 435.3 598 47.0
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 3.7e-119 433.0 596 48.2
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 4.9e-119 432.6 604 49.0
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 1.6e-117 427.6 618 46.6
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.3e-116 424.5 583 48.2
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.7e-116 424.1 612 46.9
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 2.8e-114 416.8 549 47.9
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 1.0e-113 414.8 460 56.3
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 3.0e-113 413.3 600 46.8
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 3.0e-113 413.3 587 45.7
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 4.0e-113 412.9 584 47.8
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 9.8e-112 408.3 609 45.2
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 1.4e-110 404.4 594 46.1
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 7.0e-110 402.1 648 45.4
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 2.0e-109 400.6 585 47.2
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 2.0e-109 400.6 585 47.2
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 2.0e-109 400.6 594 46.8
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 1.1e-107 394.8 587 46.5
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 7.3e-107 392.1 496 49.2
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 7.3e-107 392.1 585 46.7
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.6e-106 391.0 591 45.9
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 2.8e-106 390.2 608 44.4
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 4.0e-105 386.3 597 45.6
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 7.5e-104 382.1 437 53.3
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 2.9e-103 380.2 587 46.0
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.4e-102 377.9 595 46.1
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 1.0e-100 371.7 606 45.0
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 5.0e-100 369.4 471 50.5
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 9.8e-96 355.1 384 54.2
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.5e-88 331.3 472 46.8
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 5.8e-88 329.3 572 43.5
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 4.9e-87 326.2 551 43.2
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 6.4e-87 325.9 364 53.6
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 1.1e-86 325.1 479 44.5
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 7.8e-85 318.9 463 43.8
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 7.8e-85 318.9 462 45.5
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 1.9e-75 287.7 471 43.1
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.6e-74 284.6 351 52.1
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 1.8e-73 281.2 420 46.2
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 5.4e-70 269.6 298 53.4
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 6.2e-66 256.1 263 56.7
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 1.5e-64 251.5 350 48.9
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 1.2e-56 225.3 536 35.1
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 2.0e-56 224.6 233 57.1
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 2.9e-55 220.7 240 54.6
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 8.4e-55 219.2 282 48.2
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 9.3e-54 215.7 259 49.8
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.6e-53 214.9 231 55.4
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 2.1e-53 214.5 450 36.4
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 8.2e-50 202.6 694 30.1
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 1.3e-47 195.3 270 45.6
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 4.1e-41 173.7 327 41.6
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.6e-37 161.8 168 47.6
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-37 161.8 315 41.9
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 5.0e-31 140.2 184 50.0
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 6.1e-29 133.3 222 38.7
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 1.5e-27 128.6 154 45.5
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 1.3e-26 125.6 310 35.2
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.3e-26 125.6 212 42.0
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 3.5e-24 117.5 123 55.3
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 5.2e-20 103.6 73 68.5
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 3.7e-18 97.4 97 58.8
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 3.8e-15 87.4 138 47.1
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 2.1e-13 81.6 83 53.0
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 1.4e-09 68.9 52 63.5
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.3e-07 61.6 42 73.8


User provided reference genes

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