Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 0.0e+00 1201.8 660 100.0
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 2.3e-96 357.5 681 42.0
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 3.2e-82 310.5 392 46.4
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 1.2e-81 308.5 391 47.8
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 2.1e-81 307.8 702 37.3
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.8e-80 304.7 702 36.9
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.0e-80 303.9 371 49.6
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 1.6e-78 298.1 651 37.2
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 2.4e-77 294.3 413 44.3
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 3.1e-77 293.9 371 48.8
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 4.5e-76 290.0 681 37.4
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.5e-76 290.0 416 43.8
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 9.9e-76 288.9 384 47.9
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 4.9e-75 286.6 366 47.5
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 1.1e-74 285.4 384 44.8
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 1.9e-74 284.6 367 46.9
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.4e-74 284.3 377 47.7
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.4e-74 284.3 377 47.7
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 3.2e-74 283.9 367 46.3
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 4.6e-73 280.0 385 46.8
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 7.9e-73 279.3 433 43.2
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 3.0e-72 277.3 382 47.1
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 3.9e-72 276.9 367 47.1
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 5.6e-71 273.1 325 49.8
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 7.4e-71 272.7 319 52.4
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 7.4e-71 272.7 654 40.4
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 2.1e-70 271.2 650 38.5
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 2.4e-69 267.7 335 50.4
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 3.1e-69 267.3 224 63.4
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 5.3e-69 266.5 390 45.1
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 1.2e-68 265.4 358 45.3
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 1.2e-68 265.4 623 39.3
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 2.0e-68 264.6 405 42.5
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 2.0e-68 264.6 380 50.0
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 2.6e-68 264.2 333 48.0
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 2.6e-68 264.2 362 47.8
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.5e-68 263.5 344 47.7
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 5.8e-68 263.1 223 62.8
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 4.9e-67 260.0 391 43.7
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 8.4e-67 259.2 383 44.1
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 8.4e-67 259.2 391 44.8
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 8.4e-67 259.2 326 49.1
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.4e-66 258.5 341 47.2
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.9e-66 258.1 240 58.8
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 2.5e-66 257.7 359 46.8
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 4.2e-66 256.9 221 63.3
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 7.1e-66 256.1 369 46.6
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.2e-65 255.4 250 56.8
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 2.1e-65 254.6 362 46.4
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 2.1e-65 254.6 383 44.9
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 3.5e-65 253.8 370 43.0
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 4.6e-65 253.4 332 47.3
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 6.0e-65 253.1 241 58.1
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 7.9e-65 252.7 338 46.7
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.0e-64 252.3 239 57.7
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 1.0e-64 252.3 311 49.5
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.3e-64 251.9 224 62.5
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.3e-64 251.9 240 58.8
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 1.8e-64 251.5 324 48.8
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 1.8e-64 251.5 621 36.6
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 2.3e-64 251.1 463 46.7
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 1.1e-63 248.8 357 46.2
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 1.1e-63 248.8 359 46.0
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 7.4e-63 246.1 243 56.0
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 1.3e-62 245.4 389 41.9
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 2.2e-62 244.6 236 58.1
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 2.8e-62 244.2 338 45.6
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 2.8e-62 244.2 200 63.0
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 3.7e-62 243.8 424 38.9
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 4.8e-62 243.4 620 38.7
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 6.3e-62 243.0 375 43.5
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 1.1e-61 242.3 184 65.2
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 2.4e-61 241.1 236 57.6
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 2.4e-61 241.1 378 45.2
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 6.9e-61 239.6 333 47.1
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 9.0e-61 239.2 333 46.2
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.5e-60 238.4 220 56.8
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 2.0e-60 238.0 223 54.7
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 2.0e-60 238.0 179 67.6
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.6e-60 237.7 319 46.1
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 7.7e-60 236.1 221 57.5
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 1.0e-59 235.7 310 48.1
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 1.7e-59 235.0 366 42.6
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 3.8e-59 233.8 391 40.9
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 5.0e-59 233.4 206 60.2
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 6.5e-59 233.0 337 45.1
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 6.5e-59 233.0 338 42.9
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 6.5e-59 233.0 205 60.0
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 1.9e-58 231.5 219 56.6
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.9e-58 231.5 443 40.2
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 3.2e-58 230.7 350 43.1
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 4.2e-58 230.3 390 42.6
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 7.2e-58 229.6 360 45.6
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 2.7e-57 227.6 377 41.1
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 4.6e-57 226.9 377 41.1
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 6.1e-57 226.5 358 41.9
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 6.1e-57 226.5 358 41.9
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 6.1e-57 226.5 367 42.5
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 7.9e-57 226.1 425 38.4
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 3.9e-56 223.8 208 58.2
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 2.0e-55 221.5 315 46.0
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 2.5e-55 221.1 218 55.5
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 5.7e-55 219.9 202 59.4
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 5.7e-55 219.9 179 63.7
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 7.4e-55 219.5 188 62.2
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 9.7e-55 219.2 269 48.7
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 4.8e-54 216.9 347 42.4
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 8.2e-54 216.1 218 54.1
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 3.1e-53 214.2 308 45.1
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 9.1e-53 212.6 271 45.8
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.2e-52 212.2 218 53.7
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 5.9e-52 209.9 307 42.3
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.3e-51 208.8 200 56.0
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 2.9e-51 207.6 219 54.3
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 4.2e-50 203.8 226 48.2
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 5.5e-50 203.4 254 43.7
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 3.9e-48 197.2 331 40.5
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 3.9e-48 197.2 293 43.3
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 1.1e-47 195.7 340 40.6
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.1e-47 195.7 211 48.3
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 1.5e-47 195.3 343 41.4
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 2.6e-47 194.5 233 49.8
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 4.4e-47 193.7 231 43.7
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 4.4e-47 193.7 235 49.8
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.8e-46 190.3 186 53.8
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 6.3e-46 189.9 162 57.4
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 7.0e-45 186.4 220 48.2
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 1.6e-41 175.3 219 49.8
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 8.0e-41 172.9 156 57.7
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 1.4e-40 172.2 219 49.3
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 1.5e-39 168.7 219 47.9
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 1.2e-36 159.1 208 46.2
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 1.1e-34 152.5 190 46.3
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.5e-34 152.1 140 54.3
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 2.7e-33 147.9 199 44.2
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 4.7e-33 147.1 200 44.0
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.2e-31 142.5 164 48.2
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 3.3e-31 141.0 297 38.0
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 3.1e-29 134.4 137 49.6
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 4.1e-29 134.0 234 39.3
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 7.5e-23 113.2 100 57.0
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 1.4e-21 109.0 123 50.4
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 3.5e-20 104.4 97 61.9
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 4.9e-14 84.0 201 29.4
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 5.4e-13 80.5 71 52.1
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 2.3e-11 75.1 227 31.7
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 2.9e-11 74.7 89 49.4
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 1.4e-08 65.9 100 40.0
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 4.0e-08 64.3 183 27.3


User provided reference genes

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