Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 1.3e-254 882.5 432 100.0
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.1e-163 580.5 350 76.6
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 2.0e-162 576.2 350 77.1
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 3.9e-161 572.0 351 76.4
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 6.6e-161 571.2 351 75.2
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 1.2e-159 567.0 351 74.4
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 1.0e-158 563.9 351 76.9
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 1.4e-158 563.5 351 76.9
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 1.4e-158 563.5 351 76.9
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.3e-158 562.8 352 72.2
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 1.2e-157 560.5 351 74.6
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 2.6e-157 559.3 352 72.7
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 3.4e-157 558.9 353 72.0
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 6.4e-156 554.7 350 70.3
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 3.2e-155 552.4 352 72.7
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 7.0e-155 551.2 348 71.3
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 7.0e-155 551.2 350 72.6
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 7.0e-155 551.2 352 69.9
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.6e-154 550.1 354 72.9
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 2.7e-154 549.3 352 71.6
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 3.5e-154 548.9 352 71.3
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 1.0e-153 547.4 340 74.7
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 1.7e-153 546.6 352 74.1
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 3.0e-153 545.8 351 70.1
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 8.6e-153 544.3 347 73.8
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 1.9e-152 543.1 352 69.3
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 2.5e-152 542.7 352 69.3
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 2.5e-152 542.7 339 72.0
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 2.5e-152 542.7 352 70.2
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 3.3e-152 542.3 350 69.4
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 3.3e-152 542.3 353 69.7
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.6e-151 540.0 350 71.1
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 2.8e-151 539.3 352 73.6
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 8.0e-151 537.7 352 69.9
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 4.0e-150 535.4 352 69.9
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 4.0e-150 535.4 351 70.1
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 4.0e-150 535.4 352 68.2
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.5e-149 533.5 350 69.1
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 1.5e-149 533.5 352 69.3
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 5.8e-149 531.6 341 72.4
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 9.8e-149 530.8 351 67.5
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 1.7e-148 530.0 352 67.6
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.7e-148 530.0 352 67.9
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 2.9e-148 529.3 336 71.1
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 2.9e-148 529.3 350 69.4
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 3.7e-148 528.9 361 68.1
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.7e-148 528.9 352 67.6
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 1.4e-147 526.9 407 63.4
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.9e-147 526.6 350 69.1
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.9e-147 526.6 350 69.1
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 1.9e-147 526.6 350 68.6
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 1.9e-147 526.6 351 67.0
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 1.9e-147 526.6 350 67.7
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 2.4e-147 526.2 346 69.7
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.4e-147 526.2 374 66.6
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 9.2e-147 524.2 351 67.0
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 9.2e-147 524.2 350 68.6
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 1.6e-146 523.5 350 70.6
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 2.7e-146 522.7 347 68.3
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.0e-145 520.8 352 68.8
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 1.0e-145 520.8 351 67.8
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 1.3e-145 520.4 352 67.6
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 2.3e-145 519.6 354 68.1
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 2.3e-145 519.6 351 65.8
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 3.0e-145 519.2 339 72.6
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 3.0e-145 519.2 319 74.3
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 8.6e-145 517.7 351 70.4
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.1e-144 517.3 355 66.8
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 2.5e-144 516.2 351 70.4
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 2.5e-144 516.2 351 66.1
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 3.3e-144 515.8 351 67.5
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 3.3e-144 515.8 351 67.5
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 4.3e-144 515.4 351 67.5
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 5.6e-144 515.0 351 65.8
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 5.6e-144 515.0 351 65.8
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 1.2e-143 513.8 354 68.6
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 2.1e-143 513.1 351 66.7
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 2.8e-143 512.7 338 67.5
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 3.6e-143 512.3 351 69.8
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 3.6e-143 512.3 351 70.1
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 4.7e-143 511.9 351 66.7
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 8.1e-143 511.1 351 66.7
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 8.1e-143 511.1 337 67.4
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 3.1e-142 509.2 352 71.0
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 1.2e-141 507.3 351 66.1
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 2.2e-140 503.1 351 68.7
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 2.1e-138 496.5 358 63.1
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 1.3e-137 493.8 382 64.1
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 5.1e-137 491.9 338 67.5
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 1.5e-136 490.3 354 64.4
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 1.5e-136 490.3 319 71.2
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.6e-136 488.4 346 68.5
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 3.6e-135 485.7 319 72.7
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 4.2e-131 472.2 318 66.4
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 6.6e-129 464.9 352 61.6
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 5.6e-128 461.8 291 72.5
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 4.8e-127 458.8 352 61.1
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.1e-126 457.6 338 60.1
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 4.4e-125 452.2 318 68.6
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 1.6e-122 443.7 286 70.3
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 1.6e-122 443.7 286 70.3
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 1.6e-122 443.7 286 70.3
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 6.0e-122 441.8 296 70.3
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 1.4e-118 430.6 352 57.4
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 1.5e-117 427.2 321 62.9
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 2.4e-115 419.9 395 52.9
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 3.3e-112 409.5 296 64.5
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 1.6e-111 407.1 269 66.5
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 2.2e-108 396.7 255 70.6
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 2.7e-106 389.8 271 67.9
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.4e-102 376.7 353 53.8
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 3.8e-100 369.4 223 74.4
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.3e-95 354.4 201 77.6
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 3.4e-85 319.7 180 78.9
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 4.2e-83 312.8 347 45.8
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 1.4e-81 307.8 345 45.2
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 3.8e-76 289.7 229 57.2
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 5.5e-75 285.8 338 44.7
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.8e-70 270.8 158 74.1
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 3.1e-70 270.0 203 63.5
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 9.4e-67 258.5 212 56.6
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 4.8e-63 246.1 199 58.3
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 8.8e-57 225.3 144 67.4
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 3.4e-48 196.8 133 65.4
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 5.4e-46 189.5 364 29.9
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 2.7e-45 187.2 108 79.6
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.7e-39 167.9 125 63.2
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 1.1e-38 165.2 87 87.4
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 2.1e-29 134.4 129 52.7
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 1.1e-27 128.6 225 36.9
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 2.5e-27 127.5 341 27.0
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.8e-26 124.0 82 63.4
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.4e-25 121.7 72 73.6
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 1.7e-20 104.8 73 65.8
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 3.3e-19 100.5 69 66.7
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 4.3e-19 100.1 96 52.1
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 3.1e-17 94.0 207 34.3
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 5.4e-14 83.2 55 65.5
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 7.1e-14 82.8 362 23.5
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.5e-11 75.1 44 72.7
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.5e-11 74.3 54 63.0
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 3.6e-10 70.5 60 48.3
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 3.1e-09 67.4 145 32.4
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 3.1e-09 67.4 102 37.3
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 3.4e-08 63.9 57 52.6
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 4.4e-08 63.5 34 73.5
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 5.8e-08 63.2 32 71.9
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 7.6e-08 62.8 72 44.4
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 1.4e-06 58.5 48 62.5
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.9e-06 58.2 41 56.1


User provided reference genes

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