Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 3.7e-44 181.0 83 100.0
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 4.8e-12 74.3 83 53.0
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 2.4e-11 72.0 83 51.8
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 3.1e-11 71.6 83 50.6
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 50.6
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 48.2
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 48.2
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 48.2
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 48.2
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 48.2
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 48.2
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 48.2
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 48.2
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 50.6
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 50.6
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 50.6
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 50.6
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 48.2
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 50.6
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 48.2
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 48.2
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 4.1e-11 71.2 83 50.6
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 5.4e-11 70.9 83 50.6
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 5.4e-11 70.9 83 50.6
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 5.4e-11 70.9 83 50.6
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 7.0e-11 70.5 83 50.6
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 7.0e-11 70.5 83 50.6
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 7.0e-11 70.5 83 50.6
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 7.0e-11 70.5 83 50.6
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 7.0e-11 70.5 83 50.6
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 7.0e-11 70.5 83 50.6
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 7.0e-11 70.5 83 50.6
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 7.0e-11 70.5 83 50.6
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 7.0e-11 70.5 83 50.6
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 7.0e-11 70.5 83 50.6
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 9.1e-11 70.1 83 49.4
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 9.1e-11 70.1 83 49.4
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 9.1e-11 70.1 83 49.4
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 9.1e-11 70.1 83 49.4
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 9.1e-11 70.1 83 49.4
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 9.1e-11 70.1 83 49.4
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 9.1e-11 70.1 83 49.4
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 9.1e-11 70.1 83 50.6
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 9.1e-11 70.1 83 49.4
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 9.1e-11 70.1 83 49.4
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 1.2e-10 69.7 88 47.7
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 1.6e-10 69.3 83 49.4
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 1.6e-10 69.3 83 49.4
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 2.0e-10 68.9 83 47.0
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 2.0e-10 68.9 83 51.8
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.0e-10 68.9 83 49.4
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 2.7e-10 68.6 83 48.2
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 2.7e-10 68.6 83 47.0
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 3.5e-10 68.2 83 48.2
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 3.5e-10 68.2 83 48.2
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 4.5e-10 67.8 83 48.2
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 4.5e-10 67.8 83 48.2
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 4.5e-10 67.8 83 47.0
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 4.5e-10 67.8 83 49.4
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 5.9e-10 67.4 84 50.0
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 5.9e-10 67.4 83 48.2
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 5.9e-10 67.4 76 50.0
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 5.9e-10 67.4 83 48.2
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 5.9e-10 67.4 83 48.2
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 5.9e-10 67.4 83 47.0
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 5.9e-10 67.4 84 50.0
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 7.7e-10 67.0 81 46.9
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 1.0e-09 66.6 83 50.6
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 1.3e-09 66.2 82 47.6
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 2.2e-09 65.5 80 48.8
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 2.2e-09 65.5 84 48.8
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 2.2e-09 65.5 84 48.8
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 2.9e-09 65.1 83 48.2
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 5.0e-09 64.3 79 49.4
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 1.1e-08 63.2 79 45.6
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 1.1e-08 63.2 83 48.2
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 1.5e-08 62.8 83 45.8
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.5e-08 62.8 78 47.4
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 1.9e-08 62.4 85 47.1
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 2.5e-08 62.0 81 42.0
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 2.5e-08 62.0 81 45.7
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 5.5e-08 60.8 31 90.3
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 5.5e-08 60.8 31 90.3
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 7.2e-08 60.5 79 45.6
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 9.4e-08 60.1 28 100.0
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 9.4e-08 60.1 28 100.0
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 1.2e-07 59.7 51 60.8
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 2.1e-07 58.9 77 45.5
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 2.7e-07 58.5 77 45.5
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 2.7e-07 58.5 76 44.7
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 3.6e-07 58.2 75 44.0
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 3.6e-07 58.2 75 44.0
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 3.6e-07 58.2 75 44.0
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 3.6e-07 58.2 75 44.0
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 3.6e-07 58.2 75 45.3
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 3.6e-07 58.2 77 44.2
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 4.7e-07 57.8 75 45.3
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 4.7e-07 57.8 75 45.3
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 4.7e-07 57.8 77 44.2
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 4.7e-07 57.8 75 45.3
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 4.7e-07 57.8 75 45.3
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 4.7e-07 57.8 75 45.3
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 4.7e-07 57.8 75 45.3
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 6.1e-07 57.4 76 43.4
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 6.1e-07 57.4 75 45.3
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 6.1e-07 57.4 75 44.0
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 8.0e-07 57.0 82 42.7
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 8.0e-07 57.0 75 44.0
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 8.0e-07 57.0 29 89.7
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 8.0e-07 57.0 75 45.3
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 8.0e-07 57.0 77 42.9
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 8.0e-07 57.0 77 42.9
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 8.0e-07 57.0 77 42.9
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.0e-06 56.6 47 55.3
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.0e-06 56.6 31 74.2
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 1.0e-06 56.6 28 92.9
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 1.0e-06 56.6 28 96.4
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.3e-06 55.5 47 53.2
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 2.3e-06 55.5 77 45.5
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 2.3e-06 55.5 80 42.5
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 3.0e-06 55.1 98 39.8
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 3.0e-06 55.1 83 41.0
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 4.0e-06 54.7 84 41.7
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 4.0e-06 54.7 84 41.7
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 4.0e-06 54.7 28 82.1
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 4.0e-06 54.7 75 44.0
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 6.8e-06 53.9 73 42.5
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 6.8e-06 53.9 76 44.7


User provided reference genes

Program Settings