Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 0.0e+00 1119.8 546 100.0
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 6.7e-211 737.6 586 63.0
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 1.2e-207 726.9 581 63.3
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 2.2e-206 722.6 559 64.4
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 5.5e-205 718.0 594 61.8
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 9.4e-197 690.6 589 59.4
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 1.0e-190 670.6 536 61.0
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 6.7e-187 657.9 587 57.2
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 2.6e-186 656.0 587 57.1
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.8e-185 652.5 592 55.9
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 7.0e-184 647.9 587 56.9
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 7.0e-184 647.9 586 56.7
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 7.0e-184 647.9 591 55.7
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 4.5e-183 645.2 562 57.5
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 1.3e-182 643.7 587 57.4
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 8.5e-182 641.0 582 55.0
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 1.5e-181 640.2 590 55.9
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.9e-181 639.8 586 55.6
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 1.9e-181 639.8 589 54.8
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 3.2e-181 639.0 558 56.6
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 1.2e-180 637.1 585 55.4
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 1.2e-180 637.1 586 54.4
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 1.6e-180 636.7 583 55.2
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 2.7e-180 636.0 575 55.1
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 2.7e-180 636.0 588 54.8
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 6.1e-180 634.8 591 55.3
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 8.0e-180 634.4 620 53.4
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 1.4e-179 633.6 589 54.5
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 1.8e-179 633.3 585 55.0
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 2.3e-179 632.9 582 55.3
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 2.3e-179 632.9 588 54.1
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 3.0e-179 632.5 600 54.5
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 4.0e-179 632.1 610 54.3
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 5.2e-179 631.7 585 54.7
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 6.8e-179 631.3 591 54.5
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 6.8e-179 631.3 583 55.1
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 1.2e-178 630.6 585 54.9
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 7.5e-178 627.9 585 54.4
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 9.8e-178 627.5 572 54.5
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.3e-177 627.1 590 54.1
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 2.2e-177 626.3 586 54.8
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 2.2e-177 626.3 586 55.5
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 2.2e-177 626.3 590 53.9
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 3.7e-177 625.5 591 54.7
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 1.4e-176 623.6 590 54.1
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 1.8e-176 623.2 591 53.8
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.1e-176 622.5 590 54.1
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 4.1e-176 622.1 584 53.9
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 4.1e-176 622.1 586 53.4
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 7.0e-176 621.3 590 54.2
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 2.0e-175 619.8 592 54.2
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.0e-175 619.8 608 52.5
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 2.0e-175 619.8 591 53.5
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.5e-175 619.0 585 53.2
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 5.9e-175 618.2 580 53.6
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.0e-174 617.5 575 53.6
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 6.5e-174 614.8 589 54.2
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 8.5e-174 614.4 591 53.0
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 8.5e-174 614.4 589 52.0
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 1.1e-173 614.0 590 52.2
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.1e-173 614.0 587 52.8
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 2.5e-173 612.8 581 53.7
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 5.5e-173 611.7 563 54.5
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 5.5e-173 611.7 592 53.4
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 5.5e-173 611.7 543 54.5
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 9.5e-173 610.9 587 54.5
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 4.7e-172 608.6 590 52.4
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 1.4e-171 607.1 593 53.1
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 5.2e-171 605.1 594 52.5
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 5.2e-171 605.1 579 52.5
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 8.8e-171 604.4 608 51.5
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.6e-170 602.8 583 50.4
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 3.4e-170 602.4 626 50.8
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.4e-170 602.4 593 52.3
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 1.7e-169 600.1 594 52.9
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 2.8e-169 599.4 539 54.2
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 6.3e-169 598.2 538 56.3
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 1.1e-168 597.4 575 51.5
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 1.1e-168 597.4 594 52.0
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 1.1e-168 597.4 593 50.8
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.2e-167 594.0 626 49.8
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 1.6e-167 593.6 586 51.7
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 1.6e-167 593.6 585 50.8
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 2.0e-167 593.2 633 49.6
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 3.5e-167 592.4 539 53.8
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 3.8e-166 589.0 543 53.2
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 1.1e-165 587.4 539 53.8
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 4.3e-165 585.5 579 50.6
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 1.2e-164 583.9 575 50.6
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 3.6e-164 582.4 581 52.2
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 6.8e-163 578.2 511 54.0
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 1.2e-162 577.4 584 51.2
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 1.7e-161 573.5 539 53.1
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 8.3e-161 571.2 571 50.6
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 2.4e-160 569.7 531 52.9
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 4.1e-160 568.9 602 49.3
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.7e-159 566.2 614 46.7
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 7.8e-159 564.7 536 53.2
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 3.0e-158 562.8 466 60.1
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.5e-157 560.5 533 50.8
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 2.5e-157 559.7 491 54.2
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 4.3e-157 558.9 509 52.7
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 2.1e-156 556.6 509 52.5
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 2.6e-154 549.7 557 49.6
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 5.8e-154 548.5 510 52.4
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 2.2e-153 546.6 512 52.1
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 6.4e-153 545.0 574 46.7
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.9e-152 543.5 511 50.1
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 3.2e-152 542.7 510 51.4
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 3.2e-152 542.7 457 59.7
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 6.6e-150 535.0 589 49.9
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 3.3e-149 532.7 504 51.6
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 4.3e-149 532.3 503 51.5
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.6e-148 530.4 511 50.7
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 1.8e-147 526.9 500 50.8
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 6.8e-147 525.0 504 51.6
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 7.1e-144 515.0 510 49.8
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 6.0e-143 511.9 532 48.7
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 3.9e-142 509.2 547 47.7
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.3e-137 494.2 542 48.3
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.4e-136 490.7 498 48.6
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 4.1e-136 489.2 470 52.1
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 2.8e-132 476.5 528 45.8
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 6.0e-127 458.8 537 44.9
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.0e-126 458.0 535 43.2
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.3e-126 457.6 558 42.8
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 8.7e-126 454.9 503 46.9
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 2.1e-124 450.3 523 45.5
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 2.1e-124 450.3 593 40.1
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 1.4e-112 411.0 314 63.1
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 3.7e-100 369.8 502 41.8
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.5e-98 362.8 340 54.1
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 8.8e-94 348.6 297 58.6
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.8e-91 340.9 327 50.8
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.0e-86 325.1 593 33.9
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.5e-82 311.2 399 43.6
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 2.9e-81 307.0 391 44.2
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 1.4e-78 298.1 347 46.4
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 3.1e-75 287.0 394 41.4
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.6e-74 284.6 173 73.4
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 2.0e-74 284.3 341 48.1
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 9.4e-72 275.4 189 64.0
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 7.7e-66 255.8 393 38.4
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.1e-63 247.7 162 65.4
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.5e-56 224.9 348 38.8
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 5.5e-56 223.0 205 57.6
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 2.5e-48 197.6 169 57.4
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 3.0e-46 190.7 166 53.6
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 4.4e-45 186.8 94 85.1
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 3.3e-32 144.1 290 31.7
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 2.1e-31 141.4 154 44.2
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 2.8e-23 114.4 176 35.2
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 6.0e-18 96.7 92 52.2
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 1.7e-17 95.1 83 55.4
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 4.3e-16 90.5 121 48.8
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 1.5e-13 82.0 67 59.7
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.9e-12 77.8 38 81.6
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 8.4e-12 76.3 37 83.8
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 5.4e-11 73.6 53 54.7
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 3.0e-09 67.8 46 71.7
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.6e-07 60.8 56 51.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 4.8e-07 60.5 55 52.7


User provided reference genes

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