Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 0.0e+00 2561.9 1299 100.0
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1227.6 1478 48.8
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1177.2 1473 47.3
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1101.3 1352 47.4
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 1.2e-306 1057.0 1485 43.4
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 5.5e-304 1048.1 1515 42.4
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 1.1e-301 1040.4 1487 42.7
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 2.0e-301 1039.6 1474 43.3
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 5.7e-301 1038.1 1487 42.6
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 1.1e-296 1023.8 1509 42.5
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 8.8e-294 1014.2 1432 43.5
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 3.4e-293 1012.3 1488 42.3
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 1.2e-290 1003.8 1444 43.1
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 2.0e-290 1003.0 1603 39.7
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 2.2e-289 999.6 1492 41.5
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 5.0e-289 998.4 1486 41.6
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 7.2e-288 994.6 1483 42.4
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 1.8e-286 989.9 1634 40.2
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 1.5e-285 986.9 1488 41.5
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 1.5e-285 986.9 1528 41.3
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 2.8e-284 982.6 1501 41.6
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 2.7e-282 976.1 1513 41.4
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 5.9e-282 974.9 1405 42.8
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 1.7e-281 973.4 1505 41.4
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 1.7e-281 973.4 1501 41.4
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.9e-280 969.9 1738 38.3
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 2.5e-280 969.5 1489 41.4
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 4.2e-280 968.8 1509 41.8
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 1.6e-279 966.8 1481 41.5
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 1.0e-278 964.1 1485 41.4
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 9.8e-277 957.6 1481 41.5
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 1.7e-276 956.8 1481 41.3
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 8.3e-276 954.5 1479 40.8
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 8.3e-276 954.5 1475 40.5
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 1.2e-274 950.7 1507 41.0
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 5.9e-274 948.3 1450 42.1
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 1.7e-273 946.8 1437 41.0
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 1.7e-273 946.8 1485 40.7
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 2.9e-273 946.0 928 54.4
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 3.9e-273 945.7 1508 39.7
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 4.3e-272 942.2 1517 39.8
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 7.3e-272 941.4 982 53.7
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 1.2e-271 940.6 1482 41.0
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 1.2e-271 940.6 1486 40.9
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 1.4e-270 937.2 1446 40.7
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 1.8e-270 936.8 1482 40.4
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 2.6e-269 932.9 1457 40.4
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 4.4e-269 932.2 1475 40.0
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 1.3e-268 930.6 1484 39.6
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 1.4e-267 927.2 1469 39.8
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 1.4e-267 927.2 1466 40.2
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 3.2e-267 926.0 1481 40.6
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 1.6e-266 923.7 1529 39.2
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 3.0e-265 919.5 1467 39.7
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 5.0e-265 918.7 1482 39.6
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 6.6e-265 918.3 1485 39.7
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 1.2e-263 914.1 1488 39.6
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 2.8e-263 912.9 1697 36.7
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 1.4e-262 910.6 1550 39.2
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 8.9e-262 907.9 1483 40.0
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 2.0e-261 906.7 1531 39.2
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 2.1e-258 896.7 1560 38.1
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 2.7e-258 896.3 1485 39.5
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 4.0e-254 882.5 1317 41.4
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 2.4e-251 873.2 794 60.1
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 9.2e-251 871.3 1440 39.7
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 1.2e-250 870.9 933 52.8
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 1.1e-246 857.8 1486 37.5
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 2.0e-245 853.6 1465 39.1
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 1.7e-244 850.5 1466 39.1
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 3.5e-242 842.8 1434 38.0
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 5.6e-240 835.5 1383 38.9
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 2.8e-239 833.2 1459 37.6
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 9.9e-237 824.7 1528 36.7
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.3e-236 824.3 931 48.9
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 4.8e-231 805.8 1454 37.8
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 2.9e-228 796.6 1516 36.4
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 3.2e-195 686.8 804 49.0
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 3.0e-185 653.7 727 49.7
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 3.8e-180 636.7 1194 36.9
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 2.2e-175 620.9 1285 35.6
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 3.8e-172 610.1 1532 30.0
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 1.3e-156 558.5 514 57.2
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 5.6e-147 526.6 725 46.1
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 1.8e-137 495.0 1108 33.4
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 9.2e-134 482.6 406 64.0
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.0e-132 479.2 1425 29.3
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 3.6e-130 470.7 1065 32.8
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 1.2e-128 465.7 1077 32.2
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.6e-128 464.5 916 35.8
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 4.4e-128 463.8 407 59.0
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 3.8e-127 460.7 404 58.4
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.4e-118 432.2 334 68.0
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 3.9e-116 424.1 429 56.9
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 5.3e-105 387.1 401 52.4
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 1.1e-97 362.8 1095 29.2
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 2.9e-95 354.8 309 58.9
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 1.8e-84 318.9 478 41.4
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 9.7e-83 313.2 282 58.5
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.7e-82 312.4 793 31.0
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 1.1e-78 299.7 308 53.2
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.8e-68 265.8 178 71.9
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 1.2e-67 263.1 178 73.0
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 3.3e-67 261.5 383 40.2
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 4.1e-65 254.6 179 66.5
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 2.0e-59 235.7 558 31.2
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 1.3e-58 233.0 176 62.5
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 9.5e-54 216.9 511 29.9
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 1.2e-43 183.3 583 26.8
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 2.4e-41 175.6 105 80.0
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 4.1e-41 174.9 111 79.3
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 5.9e-40 171.0 235 44.3
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 1.3e-39 169.9 261 42.1
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.3e-36 159.1 148 48.6
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.0e-31 143.7 186 45.2
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 4.3e-30 138.3 272 34.9
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 7.3e-30 137.5 151 41.7
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 4.7e-29 134.8 121 55.4
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 1.4e-28 133.3 136 50.0
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 7.5e-27 127.5 365 29.0
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 3.7e-26 125.2 142 47.2
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 7.1e-25 120.9 257 33.1
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 3.5e-24 118.6 129 46.5
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 5.1e-23 114.8 106 54.7
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.1e-22 113.6 102 55.9
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.1e-22 113.6 311 29.3
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 3.3e-22 112.1 524 23.3
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 3.6e-21 108.6 134 45.5
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 4.7e-21 108.2 212 36.3
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.1e-20 107.1 121 51.2
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 3.4e-19 102.1 129 45.7
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 4.4e-19 101.7 111 49.5
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 5.8e-19 101.3 52 92.3
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.9e-18 99.0 319 30.4
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.1e-17 97.1 119 42.9
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 7.1e-17 94.4 118 43.2
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.9e-15 88.6 131 42.7
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 4.7e-13 81.6 121 40.5
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 1.8e-12 79.7 58 63.8
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 5.2e-12 78.2 144 38.2
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 5.2e-12 78.2 132 32.6
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 5.2e-12 78.2 93 49.5
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 9.0e-12 77.4 87 46.0
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 4.4e-11 75.1 87 44.8
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 9.9e-11 73.9 51 62.7
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 4.9e-10 71.6 58 58.6
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.6e-08 66.6 187 26.7
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.6e-08 66.6 52 57.7
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 3.5e-08 65.5 188 30.9
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 1.9e-06 59.7 90 41.1
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 2.5e-06 59.3 90 41.1
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 5.6e-06 58.2 362 24.6


User provided reference genes

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