Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 7.2e-48 193.4 84 100.0
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 9.2e-35 149.8 69 92.8
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 2.7e-34 148.3 69 89.9
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 2.7e-34 148.3 69 92.8
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 3.5e-34 147.9 69 91.3
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 4.6e-34 147.5 69 89.9
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 4.6e-34 147.5 69 89.9
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 4.6e-34 147.5 69 89.9
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 4.6e-34 147.5 69 91.3
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 4.6e-34 147.5 69 89.9
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 4.6e-34 147.5 69 89.9
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 4.6e-34 147.5 69 89.9
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 5.9e-34 147.1 69 89.9
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 5.9e-34 147.1 69 88.4
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 7.8e-34 146.7 69 89.9
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 7.8e-34 146.7 69 89.9
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 7.8e-34 146.7 69 89.9
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 7.8e-34 146.7 69 89.9
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 7.8e-34 146.7 69 89.9
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 7.8e-34 146.7 69 89.9
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 7.8e-34 146.7 69 89.9
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.0e-33 146.4 69 87.0
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.3e-33 146.0 69 88.4
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 1.3e-33 146.0 69 89.9
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.3e-33 146.0 69 88.4
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.7e-33 145.6 69 88.4
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.7e-33 145.6 69 88.4
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.7e-33 145.6 69 88.4
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.7e-33 145.6 69 88.4
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 1.7e-33 145.6 69 88.4
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 1.7e-33 145.6 69 88.4
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 1.7e-33 145.6 69 88.4
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 1.7e-33 145.6 69 88.4
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.7e-33 145.6 69 87.0
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 1.7e-33 145.6 69 88.4
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 1.7e-33 145.6 69 88.4
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 1.7e-33 145.6 69 87.0
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 2.3e-33 145.2 69 88.4
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 2.3e-33 145.2 69 87.0
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 2.3e-33 145.2 69 87.0
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 3.0e-33 144.8 69 88.4
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 3.0e-33 144.8 69 88.4
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.0e-33 144.8 69 88.4
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.0e-33 144.8 69 88.4
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.0e-33 144.8 69 88.4
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.0e-33 144.8 69 88.4
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.0e-33 144.8 69 88.4
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.0e-33 144.8 69 88.4
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 3.0e-33 144.8 69 88.4
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 3.0e-33 144.8 69 88.4
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 3.0e-33 144.8 69 87.0
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 3.0e-33 144.8 69 88.4
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 3.9e-33 144.4 69 88.4
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 3.9e-33 144.4 69 87.0
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 3.9e-33 144.4 69 89.9
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 3.9e-33 144.4 69 85.5
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 3.9e-33 144.4 69 85.5
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 3.9e-33 144.4 69 87.0
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 3.9e-33 144.4 69 87.0
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 5.0e-33 144.1 69 85.5
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 5.0e-33 144.1 69 85.5
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 6.6e-33 143.7 69 85.5
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 6.6e-33 143.7 69 87.0
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 8.6e-33 143.3 69 85.5
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 8.6e-33 143.3 69 87.0
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 8.6e-33 143.3 69 85.5
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 8.6e-33 143.3 69 85.5
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 8.6e-33 143.3 69 87.0
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 8.6e-33 143.3 69 85.5
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 1.1e-32 142.9 69 84.1
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.1e-32 142.9 69 88.4
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.1e-32 142.9 69 85.5
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.1e-32 142.9 69 85.5
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 1.1e-32 142.9 69 85.5
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 84.1
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 84.1
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 84.1
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 84.1
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 84.1
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 84.1
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 84.1
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 84.1
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 84.1
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 85.5
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 84.1
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 87.0
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 87.0
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.5e-32 142.5 69 87.0
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 1.9e-32 142.1 69 85.5
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.9e-32 142.1 68 85.3
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 1.9e-32 142.1 69 85.5
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.9e-32 142.1 69 84.1
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 2.5e-32 141.7 69 84.1
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.3e-32 141.4 69 84.1
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 3.3e-32 141.4 69 84.1
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 3.3e-32 141.4 69 84.1
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 3.3e-32 141.4 69 84.1
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 4.3e-32 141.0 69 82.6
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 4.3e-32 141.0 69 82.6
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.3e-32 141.0 69 84.1
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 4.3e-32 141.0 69 84.1
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.3e-32 141.0 69 82.6
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 5.6e-32 140.6 69 82.6
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 5.6e-32 140.6 69 82.6
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 5.6e-32 140.6 69 84.1
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 5.6e-32 140.6 69 82.6
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 5.6e-32 140.6 69 82.6
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 5.6e-32 140.6 69 84.1
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 7.3e-32 140.2 69 82.6
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 7.3e-32 140.2 69 82.6
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 7.3e-32 140.2 69 81.2
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 7.3e-32 140.2 69 84.1
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 9.5e-32 139.8 69 85.5
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 9.5e-32 139.8 69 81.2
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 1.2e-31 139.4 69 82.6
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 1.2e-31 139.4 69 82.6
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 1.2e-31 139.4 69 82.6
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-31 139.4 69 81.2
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-31 139.4 69 81.2
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-31 139.4 69 81.2
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.2e-31 139.4 69 82.6
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.2e-31 139.4 69 79.7
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.6e-31 139.0 69 82.6
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 1.6e-31 139.0 69 85.5
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 1.6e-31 139.0 69 81.2
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 2.1e-31 138.7 69 81.2
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 2.1e-31 138.7 69 85.5
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 2.8e-31 138.3 69 81.2
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.8e-31 138.3 70 82.9
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.8e-31 138.3 70 82.9
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 3.6e-31 137.9 69 84.1
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 4.7e-31 137.5 69 88.4
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 4.7e-31 137.5 69 82.6
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 1.1e-30 136.3 67 86.6
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 1.4e-30 136.0 69 76.8
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.4e-30 136.0 82 74.4
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 1.4e-30 136.0 77 76.6
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.1e-30 134.8 89 69.7
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-29 132.9 66 84.8
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.2e-29 132.9 65 87.7
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.2e-29 132.9 81 71.6
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.7e-28 127.9 65 84.6
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 6.4e-28 127.1 69 72.5
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.2e-27 123.2 68 75.0
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 9.2e-27 123.2 69 71.0
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.7e-26 121.7 65 80.0
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 2.7e-26 121.7 69 66.7
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.6e-26 120.9 62 83.9
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.6e-26 120.9 62 83.9
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 1.7e-25 119.0 62 82.3
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.7e-25 119.0 69 71.0
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.3e-25 118.6 78 67.9
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.9e-25 117.9 62 82.3
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.9e-25 117.9 62 82.3
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.9e-25 117.9 62 82.3
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.9e-25 117.9 62 82.3
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.9e-25 117.9 62 82.3
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.9e-25 117.9 62 82.3
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.9e-25 117.9 62 82.3
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.9e-25 117.9 62 82.3
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.6e-25 117.1 62 82.3
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.2e-23 112.8 57 78.9
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 3.6e-23 111.3 50 92.0
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 1.1e-22 109.8 53 79.2
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 8.9e-22 106.7 48 83.3
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.6e-21 105.1 51 86.3
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.6e-21 105.1 62 77.4
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 2.6e-21 105.1 69 63.8
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 1.1e-19 99.8 74 54.1
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.4e-19 99.4 54 81.5
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.9e-19 99.0 49 83.7
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.6e-15 84.7 47 72.3
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.4e-14 82.0 67 55.2
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 8.9e-14 80.1 69 46.4
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.6e-13 78.6 39 79.5


User provided reference genes

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