Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 9.4e-127 456.8 225 100.0
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 4.4e-76 288.5 181 74.0
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 1.8e-69 266.5 181 69.6
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 2.4e-69 266.2 182 70.9
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 2.4e-69 266.2 181 69.6
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 3.1e-69 265.8 182 69.8
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.5e-68 263.5 182 70.9
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.0e-68 263.1 181 69.6
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 3.4e-68 262.3 182 69.8
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 4.4e-68 261.9 182 67.6
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 4.4e-68 261.9 182 68.7
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.3e-67 260.4 184 68.5
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 1.3e-67 260.4 182 68.7
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.7e-67 260.0 182 68.1
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.7e-67 260.0 182 68.7
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 2.2e-67 259.6 187 68.4
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 8.4e-67 257.7 182 68.7
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.1e-66 257.3 182 67.0
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.1e-66 257.3 182 68.1
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.4e-66 256.9 184 66.3
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.9e-66 256.5 182 67.6
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.2e-65 253.8 183 66.1
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 3.5e-65 252.3 183 66.7
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 3.5e-65 252.3 182 67.0
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 3.5e-65 252.3 183 67.8
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 6.0e-65 251.5 182 66.5
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 7.8e-65 251.1 182 65.9
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.0e-64 250.8 182 66.5
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 1.0e-64 250.8 188 62.8
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.3e-64 250.4 182 63.7
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.7e-64 250.0 182 67.0
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.3e-64 249.6 182 65.9
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 3.0e-64 249.2 183 66.1
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 5.1e-64 248.4 183 66.7
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.1e-64 248.4 182 67.0
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 6.6e-64 248.1 183 66.7
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 6.6e-64 248.1 182 65.4
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 8.7e-64 247.7 181 63.5
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 8.7e-64 247.7 182 65.4
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 8.7e-64 247.7 188 65.4
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 1.1e-63 247.3 181 63.0
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.9e-63 246.5 182 64.8
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 1.9e-63 246.5 177 66.7
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.5e-63 246.1 182 64.3
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 3.3e-63 245.7 182 64.3
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 4.3e-63 245.4 190 63.7
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 5.6e-63 245.0 183 65.0
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 5.6e-63 245.0 182 65.4
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 5.6e-63 245.0 183 63.9
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 5.6e-63 245.0 187 62.0
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 5.6e-63 245.0 181 63.0
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 5.6e-63 245.0 181 63.0
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 5.6e-63 245.0 181 65.7
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 7.3e-63 244.6 183 68.3
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.3e-62 243.8 182 64.8
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.3e-62 243.8 182 62.6
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 1.6e-62 243.4 199 59.8
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 2.8e-62 242.7 181 65.7
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 2.8e-62 242.7 184 64.7
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 3.6e-62 242.3 194 61.9
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 3.6e-62 242.3 197 60.9
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 4.8e-62 241.9 185 63.2
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 4.8e-62 241.9 180 66.7
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 6.2e-62 241.5 182 62.6
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 8.1e-62 241.1 182 63.2
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 1.1e-61 240.7 182 62.6
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.4e-61 240.4 182 64.8
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 1.8e-61 240.0 184 65.8
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 1.8e-61 240.0 182 63.2
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.8e-61 240.0 182 64.8
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 2.4e-61 239.6 182 64.3
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 2.4e-61 239.6 185 64.9
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 4.0e-61 238.8 183 64.5
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 4.0e-61 238.8 182 64.3
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 4.0e-61 238.8 180 62.8
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 5.3e-61 238.4 182 62.6
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.2e-60 237.3 182 63.2
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.5e-60 236.9 183 63.4
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.5e-60 236.9 188 61.2
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 2.0e-60 236.5 183 62.8
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.0e-60 236.5 183 62.8
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.6e-60 236.1 182 63.7
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 3.4e-60 235.7 182 62.6
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 5.8e-60 235.0 182 64.3
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 5.8e-60 235.0 182 64.3
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 5.8e-60 235.0 182 64.3
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 5.8e-60 235.0 192 60.4
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 1.7e-59 233.4 183 62.3
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 2.2e-59 233.0 182 63.7
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 2.2e-59 233.0 190 58.4
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 3.8e-59 232.3 182 63.2
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 3.8e-59 232.3 182 63.7
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 6.4e-59 231.5 182 61.0
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 8.4e-59 231.1 181 61.3
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.1e-58 230.7 180 61.7
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.1e-58 230.7 179 60.3
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 1.4e-58 230.3 182 62.1
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.4e-58 230.3 182 62.6
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 1.4e-58 230.3 180 62.8
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 2.4e-58 229.6 185 63.2
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 3.2e-58 229.2 186 61.3
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 3.2e-58 229.2 182 62.1
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 5.4e-58 228.4 134 78.4
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 7.9e-57 224.6 218 53.7
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 3.9e-56 222.2 182 61.0
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 3.9e-56 222.2 182 61.0
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 8.7e-56 221.1 180 63.3
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.9e-55 219.9 196 56.6
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 8.1e-54 214.5 182 59.3
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.1e-53 214.2 242 49.2
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 1.4e-53 213.8 182 59.3
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 6.9e-53 211.5 182 57.1
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 1.7e-51 206.8 139 70.5
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 5.5e-50 201.8 181 52.5
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.2e-49 200.7 135 71.9
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 2.7e-49 199.5 135 69.6
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 4.6e-49 198.7 157 61.1
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 6.0e-49 198.4 186 57.5
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 6.7e-48 194.9 155 63.2
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 1.1e-47 194.1 179 54.2
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.5e-47 193.7 197 50.8
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 1.9e-47 193.4 190 54.7
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 4.3e-47 192.2 135 66.7
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 6.2e-46 188.3 136 65.4
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.0e-45 185.7 222 45.9
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 2.0e-44 183.3 138 66.7
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 3.4e-44 182.6 118 74.6
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.4e-44 182.6 154 57.1
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 4.5e-44 182.2 118 74.6
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.9e-43 179.5 118 72.9
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 1.9e-42 176.8 129 63.6
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.2e-41 174.1 127 61.4
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.8e-40 170.2 264 40.9
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.3e-39 166.0 130 59.2
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 7.4e-39 164.9 114 69.3
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 3.7e-38 162.5 138 55.1
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 8.2e-38 161.4 106 72.6
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.8e-37 160.2 117 66.7
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.0e-35 152.1 287 35.5
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.5e-35 151.8 158 48.7
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.1e-33 146.7 93 74.2
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.3e-27 127.5 104 58.7
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 2.2e-27 126.7 172 37.2
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.9e-27 126.3 130 50.0
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.2e-26 122.9 144 45.8
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.6e-25 119.4 148 44.6
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.7e-24 115.2 103 55.3
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 7.4e-23 111.7 101 54.5
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 1.8e-21 107.1 201 33.8
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 3.1e-21 106.3 84 65.5
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.5e-20 104.0 229 31.0
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.4e-18 97.4 78 61.5
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 3.6e-17 92.8 131 46.6
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.9e-16 89.4 118 40.7
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-15 87.4 78 50.0
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 2.6e-15 86.7 58 70.7
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.3e-15 86.3 80 53.8
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 5.5e-10 68.9 82 39.0
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.6e-09 66.2 38 78.9
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 8.0e-09 65.1 64 50.0


User provided reference genes

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