Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 3.3e-253 877.9 439 100.0
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 8.1e-191 670.6 435 76.6
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 1.9e-187 659.4 435 75.9
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.9e-184 649.4 435 73.8
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 4.4e-181 638.3 435 72.4
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.4e-174 616.7 441 70.1
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.4e-171 606.7 435 68.3
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.2e-170 603.6 435 68.0
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 9.6e-168 594.0 437 68.0
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 4.6e-162 575.1 435 66.7
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.8e-161 573.2 441 65.1
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 4.3e-160 568.5 435 65.1
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 3.7e-159 565.5 435 64.4
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 4.8e-159 565.1 435 66.4
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.4e-158 563.5 435 66.7
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.8e-158 563.1 435 65.3
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 5.8e-157 558.1 435 64.8
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 7.6e-157 557.8 433 64.7
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.7e-156 556.6 435 64.6
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 8.4e-156 554.3 437 64.3
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.4e-155 553.5 437 64.3
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.2e-155 552.0 437 64.1
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 4.2e-155 552.0 437 64.8
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 9.3e-155 550.8 436 62.4
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 2.1e-154 549.7 431 63.8
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 2.7e-154 549.3 434 64.1
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 6.1e-154 548.1 436 63.8
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 7.9e-154 547.7 466 60.1
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.0e-153 547.4 410 66.3
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.8e-153 546.6 437 63.6
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 2.3e-153 546.2 431 63.6
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 3.9e-153 545.4 434 62.2
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 3.9e-153 545.4 463 60.7
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.5e-152 542.7 437 63.4
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 4.3e-152 542.0 436 62.6
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 5.7e-152 541.6 434 62.7
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 1.6e-151 540.0 434 63.6
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 4.8e-151 538.5 437 62.9
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 4.8e-151 538.5 437 63.4
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 8.2e-151 537.7 443 61.9
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 8.2e-151 537.7 434 62.9
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.1e-150 537.3 434 62.2
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.8e-150 536.6 381 69.0
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 1.8e-150 536.6 435 61.4
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.2e-149 533.9 434 62.7
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.5e-149 533.5 434 62.7
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.3e-148 530.4 431 62.6
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 2.2e-148 529.6 433 63.0
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.2e-147 525.8 436 61.2
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 4.2e-147 525.4 434 60.8
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 4.2e-147 525.4 436 61.0
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 4.2e-147 525.4 436 61.0
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 4.2e-147 525.4 434 61.5
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 7.2e-147 524.6 431 62.4
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 9.4e-147 524.2 434 62.0
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.2e-146 523.9 437 62.7
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 6.1e-146 521.5 436 61.7
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-145 520.4 381 68.0
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.8e-145 520.0 435 61.8
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 8.8e-145 517.7 434 60.8
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 6.3e-143 511.5 453 57.8
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.4e-142 510.4 380 65.5
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.4e-142 510.4 380 65.5
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.8e-142 510.0 426 61.3
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.1e-142 508.8 436 59.6
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 4.1e-142 508.8 454 57.9
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 7.2e-139 498.0 448 57.4
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 3.6e-138 495.7 404 61.9
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.4e-137 493.8 421 60.8
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.1e-136 490.7 432 57.4
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 3.7e-135 485.7 445 56.9
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 8.2e-135 484.6 435 57.2
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.4e-134 483.8 435 57.5
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 1.8e-134 483.4 427 56.9
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.0e-133 479.9 447 55.7
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 5.9e-133 478.4 451 55.2
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 7.7e-133 478.0 452 55.1
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.2e-132 476.5 454 52.4
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 2.9e-132 476.1 438 57.5
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 3.8e-132 475.7 444 57.4
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 5.0e-132 475.3 404 59.4
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 5.0e-132 475.3 409 59.4
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.1e-131 474.2 427 58.5
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.5e-131 473.8 443 56.0
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 5.5e-131 471.9 433 57.3
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 9.4e-131 471.1 435 57.5
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 2.1e-130 469.9 435 53.8
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.1e-130 469.9 435 57.2
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.1e-130 469.9 431 56.8
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.4e-129 467.2 437 54.0
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 5.2e-129 465.3 437 55.8
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 5.2e-129 465.3 386 60.6
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.3e-127 460.7 316 70.3
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.4e-126 457.2 453 52.8
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.4e-126 457.2 453 52.8
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.8e-126 456.8 436 56.2
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 9.1e-126 454.5 438 53.2
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.6e-125 453.8 378 61.1
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.0e-124 451.1 379 58.8
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.0e-124 451.1 383 59.0
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 2.9e-124 449.5 383 58.7
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.9e-124 449.5 346 63.3
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.1e-123 447.6 341 65.1
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.5e-123 446.4 307 68.7
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 9.4e-123 444.5 400 57.5
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.1e-122 441.8 469 52.5
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.8e-121 440.3 435 52.6
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.7e-119 433.7 297 69.7
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 6.3e-119 431.8 425 52.7
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.4e-118 430.6 421 53.4
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.1e-118 429.1 435 52.0
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 1.9e-115 420.2 385 56.4
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 4.0e-113 412.5 422 53.3
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 5.7e-112 408.7 424 50.7
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.7e-111 407.1 387 53.7
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.3e-111 405.2 349 58.2
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 2.8e-106 389.8 433 51.3
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.3e-105 386.7 439 50.6
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.7e-103 379.4 336 58.3
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 6.8e-97 358.6 292 62.0
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 6.6e-92 342.0 279 58.8
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 9.5e-91 338.2 283 62.2
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.4e-88 329.7 283 61.1
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 4.1e-86 322.8 321 53.3
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.2e-85 321.2 283 60.1
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 6.0e-85 318.9 283 59.7
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.6e-82 310.8 280 58.9
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 9.2e-78 295.0 355 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 4.6e-77 292.7 331 45.0
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 2.3e-76 290.4 440 42.3
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 4.7e-74 282.7 227 62.6
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.9e-67 260.8 213 60.1
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.1e-65 253.4 174 70.7
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.5e-64 251.1 160 75.0
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 4.4e-64 249.6 154 77.9
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 4.9e-63 246.1 152 77.0
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 2.4e-62 243.8 154 76.0
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 4.2e-62 243.0 153 75.2
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 9.3e-62 241.9 163 67.5
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 8.7e-60 235.3 370 40.8
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.4e-57 228.0 145 74.5
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 4.5e-56 223.0 510 33.5
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 4.5e-56 223.0 138 77.5
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.7e-55 221.1 273 47.6
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.7e-53 213.8 181 60.2
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.3e-51 206.8 130 77.7
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 5.8e-48 196.1 180 54.4
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 2.1e-45 187.6 122 71.3
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 1.8e-44 184.5 144 59.0
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.6e-42 177.9 237 43.5
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.6e-40 170.6 128 68.8
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 2.5e-35 154.1 96 78.1
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.3e-35 153.7 308 36.0
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 3.7e-34 150.2 182 46.2
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.4e-33 148.3 132 55.3
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.4e-33 148.3 96 68.8
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 9.0e-33 145.6 212 42.9
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 9.4e-30 135.6 146 48.6
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 4.7e-21 106.7 212 34.9
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 6.3e-18 96.3 53 92.5
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.4e-17 95.1 68 67.6
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.8e-17 94.7 57 84.2
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 5.9e-16 89.7 115 46.1
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 9.4e-14 82.4 261 29.5
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.6e-13 81.6 103 45.6
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.1e-09 68.9 84 41.7


User provided reference genes

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