Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g3 Utricularia gibba HOM05D002880 ORTHO05D003450 0.0e+00 3006.1 1520 100.0
SalBow3G1624 Salvia bowleyana HOM05D002880 ORTHO05D003450 0.0e+00 2431.0 1683 75.2
Migut.H01155 Erythranthe guttata HOM05D002880 ORTHO05D003450 0.0e+00 2426.0 1685 75.0
MSTRG.2713 Avicennia marina HOM05D002880 ORTHO05D003450 0.0e+00 2378.6 1683 73.7
SGA_v2.0_scaffold78G25389 Striga asiatica HOM05D002880 ORTHO05D003450 0.0e+00 2372.8 1731 72.3
Dinv40086 Davidia involucrata HOM05D002880 ORTHO05D003450 0.0e+00 2299.6 1685 71.3
Oeu005318.1 Olea europaea HOM05D002880 ORTHO05D003450 0.0e+00 2297.3 1684 71.3
Cc07_g10710 Coffea canephora HOM05D002880 ORTHO05D003450 0.0e+00 2288.5 1694 71.5
Actinidia17445 Actinidia chinensis HOM05D002880 ORTHO05D003450 0.0e+00 2286.5 1685 70.6
CSS0040827 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 0.0e+00 2280.4 1686 70.5
CSS0038464 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 0.0e+00 2279.2 1686 70.4
Peaxi162Scf00083g00425 Petunia axillaris HOM05D002880 ORTHO05D003450 0.0e+00 2276.9 1718 70.1
Sopen02g028690 Solanum pennellii HOM05D002880 ORTHO05D003450 0.0e+00 2262.6 1686 70.1
DCAR_025997 Daucus carota HOM05D002880 ORTHO05D003450 0.0e+00 2255.7 1683 69.3
Solyc02g083900.3 Solanum lycopersicum HOM05D002880 ORTHO05D003450 0.0e+00 2254.9 1692 69.8
QL06p032741 Quercus lobata HOM05D002880 ORTHO05D003450 0.0e+00 2246.5 1684 69.1
COL.COLO4_21911 Corchorus olitorius HOM05D002880 ORTHO05D003450 0.0e+00 2242.2 1683 69.0
Thecc.01G019100 Theobroma cacao HOM05D002880 ORTHO05D003450 0.0e+00 2241.5 1683 69.0
Lsat_1_v5_gn_2_75940 Lactuca sativa HOM05D002880 ORTHO05D003450 0.0e+00 2240.7 1692 69.5
Gorai.007G195100 Gossypium raimondii HOM05D002880 ORTHO05D003450 0.0e+00 2235.3 1685 69.0
ClCG01G020300 Citrullus lanatus HOM05D002880 ORTHO05D003450 0.0e+00 2234.5 1687 68.9
Duzib187G1438 Durio zibethinus HOM05D002880 ORTHO05D003450 0.0e+00 2229.1 1683 69.0
Gorai.003G009700 Gossypium raimondii HOM05D002880 ORTHO05D003450 0.0e+00 2228.0 1683 68.6
CiPaw.07G058400 Carya illinoinensis HOM05D002880 ORTHO05D003450 0.0e+00 2225.3 1683 68.7
Gohir.D03G009500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 2224.9 1683 68.5
vmacro21922 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 0.0e+00 2224.9 1771 66.6
Duzib147G0886 Durio zibethinus HOM05D002880 ORTHO05D003450 0.0e+00 2223.4 1683 68.6
CsaV3_6G047090 Cucumis sativus L. HOM05D002880 ORTHO05D003450 0.0e+00 2221.8 1683 68.7
HanXRQChr14g0441401 Helianthus annuus HOM05D002880 ORTHO05D003450 0.0e+00 2221.8 1687 68.9
MELO3C007903.2 Cucumis melo HOM05D002880 ORTHO05D003450 0.0e+00 2219.9 1683 68.6
Gohir.A02G170600 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 2218.4 1683 68.4
HanXRQChr13g0414661 Helianthus annuus HOM05D002880 ORTHO05D003450 0.0e+00 2218.4 1686 69.1
Sed0017656 Sechium edule HOM05D002880 ORTHO05D003450 0.0e+00 2218.0 1683 68.2
Manes.01G145600 Manihot esculenta HOM05D002880 ORTHO05D003450 0.0e+00 2216.4 1683 68.7
Ciclev10024677m.g Citrus clementina HOM05D002880 ORTHO05D003450 0.0e+00 2214.1 1687 68.6
ECA238G3174 Erigeron canadensis HOM05D002880 ORTHO05D003450 0.0e+00 2211.8 1695 68.3
Sed0027366 Sechium edule HOM05D002880 ORTHO05D003450 0.0e+00 2211.4 1683 68.0
Lj2C468G7 Lonicera japonica HOM05D002880 ORTHO05D003450 0.0e+00 2208.7 1642 70.3
Potri.005G114300 Populus trichocarpa HOM05D002880 ORTHO05D003450 0.0e+00 2195.6 1687 68.2
AUR62029462 Chenopodium quinoa HOM05D002880 ORTHO05D003450 0.0e+00 2192.5 1682 68.1
TWI09G0522 Tripterygium wilfordii HOM05D002880 ORTHO05D003450 0.0e+00 2192.2 1684 67.8
arahy.Tifrunner.gnm1.ann1.E76U4D Arachis hypogaea HOM05D002880 ORTHO05D003450 0.0e+00 2188.3 1683 67.5
TAR625G0893 Trochodendron aralioides HOM05D002880 ORTHO05D003450 0.0e+00 2187.5 1687 67.9
Psat2g154720 Pisum sativum HOM05D002880 ORTHO05D003450 0.0e+00 2183.7 1683 67.0
arahy.Tifrunner.gnm1.ann1.FN5NT6 Arachis hypogaea HOM05D002880 ORTHO05D003450 0.0e+00 2180.6 1684 67.3
Ca_25825_v3 Cicer arietinum L. HOM05D002880 ORTHO05D003450 0.0e+00 2178.7 1682 66.9
Phvul.002G108900 Phaseolus vulgaris HOM05D002880 ORTHO05D003450 0.0e+00 2174.8 1685 67.4
Glyma.01G166400 Glycine max HOM05D002880 ORTHO05D003450 0.0e+00 2174.1 1684 67.7
Medtr5g022000 Medicago truncatula HOM05D002880 ORTHO05D003450 0.0e+00 2173.7 1683 66.8
Eucgr.I02351 Eucalyptus grandis HOM05D002880 ORTHO05D003450 0.0e+00 2173.3 1684 67.4
Glyma.11G077000 Glycine max HOM05D002880 ORTHO05D003450 0.0e+00 2172.5 1683 67.5
Lalb_Chr16g0377511 Lupinus albus HOM05D002880 ORTHO05D003450 0.0e+00 2172.5 1687 67.5
Nn5g30154 Nelumbo nucifera HOM05D002880 ORTHO05D003450 0.0e+00 2172.1 1687 67.3
Potri.007G057900 Populus trichocarpa HOM05D002880 ORTHO05D003450 0.0e+00 2170.6 1687 67.3
PGR119G1290 Punica granatum HOM05D002880 ORTHO05D003450 0.0e+00 2169.4 1682 67.1
CANSAT01G1381 Cannabis sativa HOM05D002880 ORTHO05D003450 0.0e+00 2169.0 1684 67.0
AUR62003370 Chenopodium quinoa HOM05D002880 ORTHO05D003450 0.0e+00 2167.1 1682 67.5
Lj2g0011330 Lotus japonicus HOM05D002880 ORTHO05D003450 0.0e+00 2162.1 1685 66.9
Prupe.7G168000 Prunus persica HOM05D002880 ORTHO05D003450 0.0e+00 2162.1 1703 66.7
Sabra05G0093500 Salix brachista HOM05D002880 ORTHO05D003450 0.0e+00 2159.4 1717 66.6
C03p58840 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2159.0 1684 66.7
A06p33500 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2155.2 1685 66.6
MD15G1245900 Malus domestica HOM05D002880 ORTHO05D003450 0.0e+00 2154.0 1679 66.6
BraA06t26284Z Brassica rapa HOM05D002880 ORTHO05D003450 0.0e+00 2152.9 1691 66.4
BolC3t18143H Brassica oleracea HOM05D002880 ORTHO05D003450 0.0e+00 2152.5 1694 66.4
Cfa006971 Carpinus fangiana HOM05D002880 ORTHO05D003450 0.0e+00 2150.6 1642 68.4
MD02G1132600 Malus domestica HOM05D002880 ORTHO05D003450 0.0e+00 2148.2 1679 66.5
EL10Ac6g15479 Beta vulgaris HOM05D002880 ORTHO05D003450 0.0e+00 2147.9 1685 66.9
GSVIVG01018783001 Vitis vinifera HOM05D002880 ORTHO05D003450 0.0e+00 2147.9 1679 67.5
Aqoxy5G01784 Aquilegia oxysepala HOM05D002880 ORTHO05D003450 0.0e+00 2145.9 1693 66.5
RcHm_v2.0_Chr2g0099461 Rosa chinensis HOM05D002880 ORTHO05D003450 0.0e+00 2143.6 1688 66.6
FAN23G1788 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 2139.4 1682 66.5
Sc07g0000970 Simmondsia chinensis HOM05D002880 ORTHO05D003450 0.0e+00 2137.5 1679 66.7
FvH4_1g11860 Fragaria vesca HOM05D002880 ORTHO05D003450 0.0e+00 2134.8 1682 66.3
THA.LOC104819750 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 0.0e+00 2131.3 1704 65.6
CARHR108410 Cardamine hirsuta HOM05D002880 ORTHO05D003450 0.0e+00 2129.4 1683 66.3
BcaC04g22939 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 2127.8 1683 66.1
BolC9t54256H Brassica oleracea HOM05D002880 ORTHO05D003450 0.0e+00 2127.4 1692 65.8
BcaB07g31700 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 2127.1 1683 66.1
FAN28G1007 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 2127.1 1682 66.2
A09p11620 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2126.7 1685 66.1
AT2G17930 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 0.0e+00 2125.1 1683 66.2
FAN19G0100 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 2124.7 1682 66.0
BraA09t36808Z Brassica rapa HOM05D002880 ORTHO05D003450 0.0e+00 2124.4 1688 65.9
C09p13660 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2122.8 1685 66.1
Thhalv10022516m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 0.0e+00 2122.8 1683 65.7
Sp3g31350 Schrenkiella parvula HOM05D002880 ORTHO05D003450 0.0e+00 2122.1 1685 65.9
MBI14_g08214_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 0.0e+00 2119.4 1687 66.4
AL3G50950 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 0.0e+00 2119.0 1683 66.1
Carub.0003s3206 Capsella rubella HOM05D002880 ORTHO05D003450 0.0e+00 2117.4 1683 66.2
Aa31LG8G15100 Aethionema arabicum HOM05D002880 ORTHO05D003450 0.0e+00 2115.1 1684 66.0
BcaB08g34776 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 2114.0 1684 65.9
THA.LOC104804262 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 0.0e+00 2113.2 1684 65.7
FAN26G2624 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 2108.6 1728 64.5
PSO541G3550 Papaver somniferum HOM05D002880 ORTHO05D003450 0.0e+00 2079.7 1690 65.2
PSO675G2090 Papaver somniferum HOM05D002880 ORTHO05D003450 0.0e+00 2078.9 1691 65.3
Haze_03765 Corylus avellana HOM05D002880 ORTHO05D003450 0.0e+00 2061.2 1564 68.7
Hund16489 Selenicereus undatus HOM05D002880 ORTHO05D003450 0.0e+00 2057.3 1633 66.1
Atru.chr1.3786 Acer truncatum HOM05D002880 ORTHO05D003450 0.0e+00 2057.0 1683 65.2
Thhalv10024177m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 0.0e+00 2048.1 1683 63.8
Sabra07G0049600 Salix brachista HOM05D002880 ORTHO05D003450 0.0e+00 2043.9 1811 62.1
AL7G14960 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 0.0e+00 2036.5 1683 63.4
CARHR244480 Cardamine hirsuta HOM05D002880 ORTHO05D003450 0.0e+00 2033.8 1681 63.2
Aa31LG6G13030 Aethionema arabicum HOM05D002880 ORTHO05D003450 0.0e+00 2026.5 1691 63.2
Carub.0007s0415 Capsella rubella HOM05D002880 ORTHO05D003450 0.0e+00 2023.4 1684 63.2
AT4G36080 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 0.0e+00 2018.8 1681 63.0
C01p02960 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2013.0 1683 63.8
BolC1t00282H Brassica oleracea HOM05D002880 ORTHO05D003450 0.0e+00 2013.0 1683 63.8
Sp7g33860 Schrenkiella parvula HOM05D002880 ORTHO05D003450 0.0e+00 2011.5 1688 63.3
BraA01t00252Z Brassica rapa HOM05D002880 ORTHO05D003450 0.0e+00 2007.6 1681 63.7
A01p02660 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2002.6 1690 63.4
Nitab4.5_0003382g0060 Nicotiana tabacum HOM05D002880 ORTHO05D003450 0.0e+00 1953.7 1503 69.3
TPR.G18181 Trifolium pratense HOM05D002880 ORTHO05D003450 0.0e+00 1952.6 1556 64.8
BcaNung00767 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 1949.9 1640 63.5
Lj6g0023005 Lotus japonicus HOM05D002880 ORTHO05D003450 0.0e+00 1941.4 1689 61.5
Gohir.D11G183100 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 1903.3 1488 66.6
Zm00001eb329250 Zea mays HOM05D002880 ORTHO05D003450 0.0e+00 1827.4 1694 58.2
vmacro23248 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 0.0e+00 1799.3 1592 61.2
AagrBONN_evm.TU.Sc2ySwM_368.861 Anthoceros agrestis HOM05D002880 ORTHO05D003450 0.0e+00 1782.3 1702 56.5
HPP92_000450 Vanilla planifolia HOM05D002880 ORTHO05D003450 0.0e+00 1759.2 1596 60.3
SMO147G0347 Selaginella moellendorffii HOM05D002880 ORTHO05D003450 0.0e+00 1755.0 1688 56.5
Mapoly0010s0094 Marchantia polymorpha HOM05D002880 ORTHO05D003450 0.0e+00 1737.6 1775 54.1
Pp3c17_20000 Physcomitrium patens HOM05D002880 ORTHO05D003450 0.0e+00 1729.1 1718 55.7
Gohir.A11G175500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 1694.1 1265 68.5
Rhsim10G0212300 Rhododendron simsii HOM05D002880 ORTHO05D003450 0.0e+00 1578.9 1093 73.5
BcaC01g02877 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 1521.1 1090 70.0
Lalb_Chr09g0321741 Lupinus albus HOM05D002880 ORTHO05D003450 0.0e+00 1519.6 1098 69.9
vmacro23472 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 0.0e+00 1469.5 1093 69.5
HPP92_000393 Vanilla planifolia HOM05D002880 ORTHO05D003450 0.0e+00 1444.9 1095 68.0
CBR_g31691 Chara braunii HOM05D002880 ORTHO05D003450 0.0e+00 1402.1 1884 45.2
CAN.G1671.13 Capsicum annuum HOM05D002880 ORTHO05D003450 0.0e+00 1293.9 834 76.7
ATR0630G002 Amborella trichopoda HOM05D002880 ORTHO05D003450 0.0e+00 1133.2 837 67.0
SHI08552 Sapria himalayana HOM05D002880 ORTHO05D003450 0.0e+00 1106.7 847 65.4
MCO16G028 Micromonas commoda HOM05D002880 ORTHO05D003450 3.8e-296 1022.3 1734 37.4
CAN.G1671.12 Capsicum annuum HOM05D002880 ORTHO05D003450 1.9e-271 940.3 858 62.6
PRCOL_00005144 Prasinoderma coloniale HOM05D002880 ORTHO05D003450 1.1e-255 887.9 1922 32.4
Nitab4.5_0026560g0010 Nicotiana tabacum HOM05D002880 ORTHO05D003450 1.9e-247 860.5 545 78.2
SHI08553 Sapria himalayana HOM05D002880 ORTHO05D003450 6.4e-235 818.9 813 56.7
Cre02.g088750 Chlamydomonas reinhardtii HOM05D002880 ORTHO05D003450 7.1e-210 735.7 2207 28.3
Lalb_Chr09g0321751 Lupinus albus HOM05D002880 ORTHO05D003450 3.8e-187 660.2 497 70.6
TAR381G0408 Trochodendron aralioides HOM05D002880 ORTHO05D003450 7.1e-178 629.4 500 68.6
ATR0630G005 Amborella trichopoda HOM05D002880 ORTHO05D003450 2.5e-175 620.9 503 65.2
Cpa.g.sc6.249 Carica papaya HOM05D002880 ORTHO05D003450 1.5e-135 488.8 620 48.2
Ah.03g148750 Amaranthus hybridus HOM05D002880 ORTHO05D003450 2.9e-131 474.6 325 77.5
Cfa023980 Carpinus fangiana HOM05D002880 ORTHO05D003450 1.6e-129 468.8 1678 26.2
Nitab4.5_0005660g0020 Nicotiana tabacum HOM05D002880 ORTHO05D003450 8.0e-129 466.5 343 73.8
Cpa.g.sc6.248 Carica papaya HOM05D002880 ORTHO05D003450 2.1e-89 335.5 194 88.7
ATR0803G001 Amborella trichopoda HOM05D002880 ORTHO05D003450 3.0e-75 288.5 221 70.6
Actinidia17493 Actinidia chinensis HOM05D002880 ORTHO05D003450 3.7e-49 201.8 121 79.3
vmacro23471 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 8.2e-49 200.7 205 56.6
Actinidia17497 Actinidia chinensis HOM05D002880 ORTHO05D003450 4.1e-48 198.4 121 77.7
Atru.chr1.4015 Acer truncatum HOM05D002880 ORTHO05D003450 6.9e-48 197.6 126 66.7
ATR1041G001 Amborella trichopoda HOM05D002880 ORTHO05D003450 7.7e-47 194.1 174 58.6
COL.COLO4_21944 Corchorus olitorius HOM05D002880 ORTHO05D030896 8.2e-41 174.1 146 58.2
COL.COLO4_17676 Corchorus olitorius HOM05D002880 ORTHO05D003450 3.2e-37 162.2 105 81.9
Cpa.g.sc6.250 Carica papaya HOM05D002880 ORTHO05D003450 2.1e-36 159.5 102 76.5
Medtr5g038110 Medicago truncatula HOM05D002880 ORTHO05D038078 9.7e-34 150.6 110 66.4
Atru.chr1.4014 Acer truncatum HOM05D002880 ORTHO05D003450 6.3e-33 147.9 102 70.6
MBI09_g12804_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 2.1e-28 132.9 89 75.3
COL.COLO4_18103 Corchorus olitorius HOM05D002880 ORTHO05D003450 6.8e-27 127.9 110 62.7
Psat4g093120 Pisum sativum HOM05D002880 ORTHO05D003450 1.2e-26 127.1 115 59.1
Psat6g157240 Pisum sativum HOM05D002880 ORTHO05D000335 2.6e-26 125.9 83 69.9
MBI01_g01265_MAGBIO Magnolia biondii HOM05D000597 ORTHO05D000603 7.0e-24 117.9 75 77.3
Actinidia11221 Actinidia chinensis HOM05D002880 ORTHO05D038078 1.6e-23 116.7 66 86.4
COL.COLO4_11384 Corchorus olitorius HOM05D002880 ORTHO05D003450 5.5e-21 108.2 82 70.7
TPR.G18175 Trifolium pratense HOM05D002880 ORTHO05D003450 2.1e-20 106.3 66 86.4
Psat6g156840 Pisum sativum HOM05D000280 ORTHO05D000632 8.0e-20 104.4 64 75.0
COL.COLO4_37332 Corchorus olitorius HOM05D002880 ORTHO05D003450 1.0e-19 104.0 69 78.3
Actinidia00879 Actinidia chinensis HOM05D002880 ORTHO05D003450 1.6e-12 80.1 89 49.4
Atru.chr1.4016 Acer truncatum HOM05D002880 ORTHO05D052144 3.6e-12 79.0 48 79.2
Actinidia17496 Actinidia chinensis HOM05D002880 ORTHO05D030896 1.0e-11 77.4 156 34.6
Psat5g186400 Pisum sativum HOM05D000280 ORTHO05D000632 3.4e-10 72.4 44 77.3
Actinidia15056 Actinidia chinensis HOM05D002880 ORTHO05D001283 2.9e-09 69.3 40 75.0
Actinidia17492 Actinidia chinensis HOM05D002880 ORTHO05D030896 5.4e-08 65.1 55 58.2
Atru.chr1.4018 Acer truncatum HOM05D002880 ORTHO05D003450 1.6e-07 63.5 39 79.5
Actinidia22980 Actinidia chinensis HOM05D002880 ORTHO05D003450 2.7e-07 62.8 117 41.0
Actinidia22979 Actinidia chinensis HOM05D002880 ORTHO05D054390 1.7e-06 60.1 74 48.6


User provided reference genes

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