Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 2.1e-129 465.7 236 100.0
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 9.7e-58 227.6 174 67.8
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 7.0e-56 221.5 195 63.6
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 8.5e-54 214.5 159 69.8
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 4.0e-51 205.7 181 56.9
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 7.0e-48 194.9 197 55.3
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 5.9e-47 191.8 138 69.6
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 1.1e-45 187.6 168 56.0
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 1.1e-45 187.6 168 56.0
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.5e-45 187.2 168 54.8
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.2e-45 185.7 168 54.8
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 2.7e-44 183.0 151 59.6
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.6e-44 182.6 168 54.2
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.0e-44 181.4 151 57.6
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.4e-42 175.6 178 52.2
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.4e-42 175.6 178 52.2
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 5.7e-42 175.3 145 58.6
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-41 174.1 178 51.7
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-41 174.1 178 51.7
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.4e-40 170.6 174 52.3
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 1.4e-40 170.6 205 47.8
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 2.4e-40 169.9 132 63.6
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 5.4e-40 168.7 235 46.0
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 7.0e-40 168.3 132 62.9
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 7.0e-40 168.3 182 50.5
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 1.2e-39 167.5 131 64.9
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 1.2e-39 167.5 162 55.6
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 1.2e-39 167.5 156 55.1
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 1.6e-39 167.2 134 62.7
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 2.0e-39 166.8 186 48.4
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.0e-39 166.8 183 51.4
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 3.5e-39 166.0 205 46.8
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 3.5e-39 166.0 178 51.1
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 5.9e-39 165.2 132 61.4
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 5.9e-39 165.2 132 61.4
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 5.9e-39 165.2 132 61.4
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 5.9e-39 165.2 132 61.4
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 5.9e-39 165.2 132 61.4
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 7.7e-39 164.9 132 62.1
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 7.7e-39 164.9 179 50.8
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 1.0e-38 164.5 177 50.3
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 1.3e-38 164.1 132 60.6
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.3e-38 164.1 179 50.8
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 1.7e-38 163.7 132 60.6
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 2.3e-38 163.3 132 59.8
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 2.3e-38 163.3 126 65.1
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 2.3e-38 163.3 136 60.3
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 2.3e-38 163.3 125 63.2
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 2.9e-38 162.9 126 65.1
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 2.9e-38 162.9 177 52.0
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 3.8e-38 162.5 136 58.8
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 5.0e-38 162.2 169 53.8
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 6.6e-38 161.8 233 45.1
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 6.6e-38 161.8 136 59.6
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 1.1e-37 161.0 160 51.9
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 1.1e-37 161.0 131 59.5
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.1e-37 161.0 136 61.8
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 1.5e-37 160.6 132 60.6
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 3.3e-37 159.5 159 54.7
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 5.6e-37 158.7 134 58.2
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 7.2e-37 158.3 136 58.1
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 9.5e-37 157.9 136 61.0
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 1.2e-36 157.5 136 58.8
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.6e-36 157.1 136 61.0
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.6e-36 157.1 136 61.0
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 2.8e-36 156.4 138 59.4
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 2.8e-36 156.4 136 57.4
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 2.8e-36 156.4 153 52.9
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 3.6e-36 156.0 171 47.4
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 6.1e-36 155.2 135 56.3
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 6.1e-36 155.2 134 60.4
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 8.0e-36 154.8 139 56.8
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.4e-35 154.1 135 55.6
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 1.4e-35 154.1 135 55.6
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.8e-35 153.7 133 60.9
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.8e-35 153.7 137 57.7
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 3.0e-35 152.9 127 63.0
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 3.0e-35 152.9 136 55.9
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 5.2e-35 152.1 127 63.0
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 1.2e-34 151.0 126 59.5
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.5e-34 150.6 183 44.3
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 4.4e-34 149.1 136 55.9
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 7.5e-34 148.3 121 61.2
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 7.5e-34 148.3 127 61.4
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 9.8e-34 147.9 130 56.9
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.9e-33 146.4 122 57.4
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 2.9e-33 146.4 135 54.1
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 2.4e-32 143.3 148 50.0
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 3.2e-32 142.9 126 55.6
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 4.1e-32 142.5 128 58.6
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 4.1e-32 142.5 128 58.6
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 7.0e-32 141.7 126 55.6
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 9.2e-32 141.4 128 57.8
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 1.6e-31 140.6 121 55.4
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 2.7e-31 139.8 193 41.5
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.0e-30 137.9 134 53.0
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.0e-30 137.9 134 53.0
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 1.0e-30 137.9 134 53.0
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 2.3e-27 126.7 185 40.5
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 8.9e-27 124.8 110 57.3
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 1.5e-26 124.0 121 50.4
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 5.8e-26 122.1 128 48.4
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 5.8e-26 122.1 128 48.4
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 8.3e-25 118.2 123 52.8
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.4e-24 117.5 150 45.3
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 4.6e-23 112.5 87 58.6
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 7.8e-23 111.7 102 54.9
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.7e-22 110.5 151 45.0
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 2.3e-22 110.2 104 55.8
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 4.3e-21 105.9 80 58.8
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.4e-19 100.9 148 45.9
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 2.4e-16 90.1 90 50.0
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 3.2e-16 89.7 95 50.5
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 5.4e-16 89.0 91 44.0
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 3.1e-11 73.2 78 48.7
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.5e-10 70.9 71 53.5
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 3.4e-10 69.7 175 36.0
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 4.4e-10 69.3 69 44.9
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 7.6e-10 68.6 131 31.3
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 9.9e-10 68.2 73 50.7
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 4.9e-09 65.9 119 32.8
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.1e-08 64.7 120 38.3
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 5.4e-08 62.4 74 44.6
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 7.1e-08 62.0 74 43.2
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.6e-07 60.8 94 41.5
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 1.6e-07 60.8 63 46.0
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 2.1e-07 60.5 46 56.5
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 2.1e-07 60.5 63 46.0
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 1.7e-06 57.4 105 35.2


User provided reference genes

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