Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 4351.2 2197 100.0
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2233.0 2305 52.8
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2217.2 2410 50.3
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2146.3 2429 48.9
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 1913.3 2436 44.5
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 1859.7 2354 44.4
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 1852.0 2358 43.8
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 1838.9 2405 43.9
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1836.6 2434 43.2
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 1834.3 2427 43.6
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 1825.8 2335 43.9
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 1824.7 2356 43.8
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 1815.4 2316 43.9
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 1798.9 2329 43.4
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 1793.5 2329 43.5
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 1788.1 2349 43.1
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 1787.7 2438 42.9
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 1784.2 2316 43.4
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 1783.8 2378 43.3
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 1776.9 2330 43.2
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1771.5 2428 42.5
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 1770.4 2310 43.3
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 1768.8 2335 43.4
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 1766.5 2324 43.1
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 1765.4 2327 43.4
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 1757.7 2342 43.7
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 1757.3 2358 42.9
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1755.7 2440 41.5
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 1748.0 2437 42.1
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 1733.8 2422 41.3
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 1729.5 2434 41.0
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 1729.1 2437 40.7
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1723.0 2471 40.2
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1721.1 2471 40.1
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 1720.7 2279 42.8
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1719.9 2412 41.8
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 1719.9 2330 42.9
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 1718.7 2329 43.1
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1715.3 2471 40.1
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1712.2 2471 40.1
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 1711.0 2325 42.7
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 1710.3 2275 42.0
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 1708.3 2316 42.6
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1706.4 2441 40.9
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 1703.7 2313 42.7
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1701.8 2441 40.8
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 1698.7 2312 42.7
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1698.7 2343 41.4
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1697.6 2322 42.3
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 1681.8 2325 42.0
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 1680.2 2339 41.1
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 1677.9 2326 42.1
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 1660.6 2368 41.3
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1653.6 2308 41.6
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1652.9 1938 47.3
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1649.0 1938 47.3
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 1648.6 2421 40.9
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 1648.3 2401 40.4
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 1642.1 2318 41.5
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 1638.2 2297 41.3
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 1631.7 2330 40.7
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 1631.3 2399 40.0
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 1628.6 2303 40.8
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 1627.8 2395 39.6
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 1627.1 2339 41.1
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1625.9 2299 40.7
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 1623.2 2296 40.9
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1615.9 2314 41.0
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 1610.1 2363 40.8
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 1609.7 2319 40.1
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 1606.7 2323 40.3
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1606.3 2295 40.4
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 1600.5 2454 40.1
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1599.7 2309 40.8
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 1596.6 2322 40.0
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 1594.7 2399 39.7
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1590.1 2296 40.3
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1589.3 2392 39.5
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 1582.4 2309 41.0
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 1580.1 2319 39.9
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 1570.4 2315 39.3
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 1566.2 2389 39.8
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1562.4 2465 38.2
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1555.4 2465 37.8
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 1551.2 2262 40.5
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 1542.3 2261 39.8
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 1539.2 2404 38.8
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 1493.0 2112 41.6
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1444.9 2110 39.9
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1431.4 2308 37.2
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1404.4 2067 39.7
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1328.5 2355 36.1
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1280.8 1630 43.9
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1275.4 1519 46.8
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1262.3 1751 41.5
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1241.5 1452 47.0
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1110.9 1375 45.0
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1106.3 1389 44.7
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1076.2 976 58.0
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 2.1e-303 1047.0 1420 42.6
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 2.8e-292 1010.0 1462 40.4
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.4e-288 997.7 1462 40.2
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 4.3e-248 863.2 1014 46.3
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 1.5e-237 828.2 1410 36.3
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 5.8e-221 773.1 1382 36.0
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 3.5e-210 737.3 1041 40.9
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.3e-207 728.8 2144 28.0
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 1.2e-202 712.2 2089 27.7
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 4.5e-197 693.7 1487 32.6
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 7.6e-197 693.0 1963 28.0
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 1.8e-182 645.2 945 40.6
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 5.0e-164 583.9 713 45.6
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 6.7e-161 573.5 901 38.2
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 8.8e-153 546.6 2084 24.8
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.2e-146 526.2 695 40.1
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.7e-135 489.2 796 37.8
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 5.0e-116 424.5 791 34.5
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 7.6e-96 357.5 261 64.4
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 1.2e-93 350.1 648 34.9
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 1.4e-81 310.1 311 48.9
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 6.9e-73 281.2 319 46.1
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.9e-67 263.1 522 35.2
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 9.4e-62 244.2 326 39.0
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 4.6e-61 241.9 328 39.0
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 1.1e-51 210.7 437 33.0
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 9.7e-51 207.6 219 48.4
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 2.9e-47 196.1 150 63.3
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.2e-45 190.7 480 31.0
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.0e-44 187.6 277 40.4
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 3.0e-44 186.0 247 40.9
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.4e-43 182.2 344 36.0
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 7.4e-43 181.4 122 68.9
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.4e-41 176.4 442 28.7
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.3e-36 159.8 264 39.8
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 8.8e-36 157.9 190 48.9
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 2.0e-35 156.8 123 60.2
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 3.3e-35 156.0 114 64.9
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.7e-34 153.7 406 28.1
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 1.4e-33 150.6 107 67.3
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 4.2e-30 139.0 131 52.7
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 3.6e-29 136.0 97 69.1
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 4.5e-24 119.0 198 36.4
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 8.6e-23 114.8 282 28.7
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 1.9e-22 113.6 314 30.6
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 2.5e-22 113.2 797 21.6
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 9.5e-22 111.3 108 53.7
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 1.6e-21 110.5 302 31.5
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 1.2e-16 94.4 147 36.7
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 1.6e-16 94.0 215 30.2
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.0e-16 93.6 125 38.4
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 2.1e-13 83.6 278 25.9
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 5.2e-12 79.0 106 36.8
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 4.4e-11 75.9 153 33.3
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.3e-10 74.3 420 23.8
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.1e-09 69.3 145 33.1
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 5.4e-09 68.9 98 35.7
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 7.0e-09 68.6 98 35.7
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.5e-06 60.1 122 34.4
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 7.3e-06 58.5 42 66.7


User provided reference genes

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