Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 1.0e-128 463.4 224 100.0
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.1e-82 310.5 215 67.9
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.3e-80 303.5 225 62.7
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 8.9e-77 290.8 221 61.1
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 1.7e-75 286.6 221 60.6
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 1.7e-75 286.6 227 58.6
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 2.2e-75 286.2 229 58.1
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 2.9e-75 285.8 228 56.1
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 2.9e-75 285.8 227 58.6
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 1.4e-74 283.5 227 57.7
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 2.4e-74 282.7 226 57.1
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 2.4e-74 282.7 229 56.8
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 2.4e-74 282.7 226 59.7
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 2.4e-74 282.7 229 57.2
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 2.4e-74 282.7 228 58.3
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 3.2e-74 282.3 229 57.2
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 9.2e-74 280.8 222 57.7
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.7e-73 279.3 229 55.5
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.7e-73 279.3 229 55.9
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 2.7e-73 279.3 223 57.8
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 3.5e-73 278.9 222 59.0
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 6.0e-73 278.1 229 55.5
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 7.8e-73 277.7 220 59.5
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 1.0e-72 277.3 229 56.3
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.0e-72 277.3 226 57.1
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 3.0e-72 275.8 229 54.1
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 3.9e-72 275.4 229 54.1
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 5.0e-72 275.0 229 56.8
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 6.6e-72 274.6 225 56.9
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 6.6e-72 274.6 226 55.3
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.6e-72 274.6 229 55.9
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 8.6e-72 274.2 225 57.3
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.5e-71 273.5 229 55.9
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.9e-71 273.1 229 55.0
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 2.5e-71 272.7 229 55.5
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 2.5e-71 272.7 229 54.6
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 5.6e-71 271.6 228 55.7
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.6e-70 270.0 226 54.4
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.6e-70 270.0 225 53.3
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 2.8e-70 269.2 222 55.9
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 2.8e-70 269.2 218 57.8
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.6e-70 268.9 230 56.1
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 1.1e-69 267.3 223 57.0
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 1.1e-69 267.3 223 56.1
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.4e-69 266.9 228 52.6
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.8e-69 266.5 199 63.8
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.1e-69 265.8 208 58.7
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 3.1e-69 265.8 223 56.1
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 4.0e-69 265.4 225 54.7
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 5.2e-69 265.0 222 56.3
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.5e-68 263.5 225 55.1
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 2.0e-68 263.1 230 56.5
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 2.0e-68 263.1 199 59.8
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.6e-68 262.7 224 51.8
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 9.8e-68 260.8 220 56.4
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.7e-67 260.0 224 51.8
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 2.9e-67 259.2 229 53.7
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 3.7e-67 258.8 225 54.2
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 4.9e-67 258.5 225 53.8
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 1.4e-66 256.9 223 52.0
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.4e-66 256.9 229 53.3
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.9e-66 256.5 226 53.5
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.9e-66 256.5 228 51.8
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 4.1e-66 255.4 227 56.4
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.0e-65 251.5 230 53.0
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 5.1e-64 248.4 224 52.7
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 5.6e-63 245.0 228 53.9
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.6e-63 245.0 228 54.4
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 9.5e-63 244.2 228 54.4
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.6e-62 243.4 225 54.2
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 2.8e-62 242.7 224 48.7
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 2.8e-62 242.7 224 51.8
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.6e-62 242.3 228 53.9
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 4.7e-62 241.9 224 46.4
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.2e-62 241.5 228 53.9
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 1.8e-61 240.0 230 53.5
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.3e-61 239.6 223 47.5
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 2.3e-61 239.6 223 46.6
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.2e-61 238.4 192 57.8
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 8.9e-61 237.7 224 46.9
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 1.2e-60 237.3 221 47.5
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.5e-60 236.9 223 46.6
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 2.0e-60 236.5 218 47.2
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 3.4e-60 235.7 225 52.9
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 5.8e-60 235.0 218 47.2
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 9.9e-60 234.2 217 47.5
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 1.7e-59 233.4 218 46.8
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 1.7e-59 233.4 225 47.1
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 2.9e-59 232.6 226 47.3
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 4.9e-59 231.9 225 52.0
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 4.1e-58 228.8 226 46.0
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 6.0e-57 224.9 223 46.6
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 6.0e-57 224.9 224 46.4
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.9e-51 205.3 220 48.6
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.1e-50 204.1 220 48.2
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 5.4e-50 201.8 227 45.4
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 3.5e-49 199.1 223 46.6
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 4.8e-46 188.7 251 38.2
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.1e-45 187.6 237 42.2
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 2.4e-45 186.4 224 40.2
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 6.9e-45 184.9 237 42.2
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.9e-43 179.5 221 41.2
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 2.9e-43 179.5 232 41.4
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 4.9e-43 178.7 226 42.5
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 1.1e-42 177.6 145 57.9
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.2e-42 175.6 222 41.4
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 7.1e-42 174.9 141 53.9
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 9.3e-42 174.5 255 38.8
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.6e-41 173.7 255 39.2
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 2.7e-41 172.9 239 36.8
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 3.0e-40 169.5 230 37.0
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 3.9e-40 169.1 236 37.7
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 1.1e-39 167.5 227 39.2
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.1e-39 167.5 243 39.5
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 7.4e-39 164.9 230 37.8
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 3.6e-38 162.5 170 42.4
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 3.6e-38 162.5 170 42.4
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 4.8e-38 162.2 262 36.3
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.4e-37 159.8 193 45.1
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 5.3e-37 158.7 225 37.3
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.3e-37 158.7 229 37.6
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 9.0e-37 157.9 257 35.0
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 2.6e-36 156.4 212 41.5
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 2.2e-35 153.3 238 35.7
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.9e-35 152.9 221 42.5
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 8.4e-35 151.4 232 37.1
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 3.2e-34 149.4 258 34.5
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 6.0e-33 145.2 259 32.4
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 6.0e-33 145.2 143 46.9
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 2.3e-32 143.3 144 45.8
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.0e-32 142.9 260 32.7
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.9e-32 142.5 226 38.9
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.1e-31 141.0 317 30.6
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 4.3e-31 139.0 234 32.1
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.4e-31 138.3 320 30.6
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.6e-30 137.1 226 38.1
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.1e-30 136.7 317 30.9
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.2e-30 135.2 252 33.3
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 6.2e-30 135.2 221 33.5
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 8.1e-30 134.8 210 37.6
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 2.0e-28 130.2 214 35.5
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 3.4e-28 129.4 150 42.0
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 7.6e-28 128.3 224 36.2
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 3.8e-27 125.9 225 34.7
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 3.8e-27 125.9 151 39.1
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 6.5e-27 125.2 156 39.1
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 4.2e-26 122.5 146 39.7
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 9.3e-26 121.3 146 39.0
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 2.1e-25 120.2 150 36.7
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 2.7e-25 119.8 110 51.8
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 8.7e-24 114.8 245 31.8
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.5e-23 113.2 218 30.7
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 3.7e-22 109.4 143 39.2
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 3.1e-21 106.3 99 50.5
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 4.1e-21 105.9 130 43.1
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 2.2e-19 100.1 107 41.1
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.3e-16 90.9 223 30.9
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.4e-15 85.1 78 44.9
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.4e-13 80.9 153 29.4
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.2e-12 77.8 156 33.3
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.9e-11 73.2 94 36.2
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.4e-10 70.9 111 32.4
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 6.1e-09 65.5 192 28.1
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 6.7e-08 62.0 68 48.5


User provided reference genes

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