Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 9.8e-203 709.9 358 100.0
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 2.0e-110 403.3 339 68.1
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 1.3e-66 257.7 318 50.6
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 6.6e-66 255.4 323 49.5
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 3.6e-64 249.6 325 49.2
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 1.8e-63 247.3 339 46.9
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 9.9e-62 241.5 281 56.6
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 1.0e-58 231.5 327 47.7
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 1.0e-58 231.5 347 47.3
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 6.6e-58 228.8 248 54.8
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 2.5e-57 226.9 349 45.6
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 2.8e-56 223.4 327 43.7
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 3.6e-56 223.0 331 45.0
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 2.9e-53 213.4 322 43.8
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 8.4e-53 211.8 328 43.0
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 1.6e-51 207.6 342 44.4
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 4.6e-51 206.1 339 40.7
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 3.0e-50 203.4 328 44.8
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 5.1e-50 202.6 265 50.2
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 8.7e-50 201.8 347 41.2
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.3e-48 198.0 349 41.3
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.8e-48 196.8 335 43.0
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.4e-47 194.5 298 45.3
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 2.4e-47 193.7 339 41.0
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 7.6e-46 188.7 312 41.7
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 2.2e-45 187.2 330 40.9
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 6.4e-45 185.7 303 41.9
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 2.4e-44 183.7 296 42.2
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 2.4e-44 183.7 332 41.0
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 2.4e-44 183.7 307 43.0
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 7.1e-44 182.2 323 39.9
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 4.6e-43 179.5 339 37.8
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 7.9e-43 178.7 302 41.1
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 7.9e-43 178.7 327 41.0
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 1.0e-42 178.3 288 42.7
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.8e-42 177.6 346 39.6
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 3.0e-42 176.8 222 49.5
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 3.9e-42 176.4 305 42.3
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 5.1e-42 176.0 337 38.0
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 6.7e-42 175.6 355 38.6
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 8.7e-42 175.3 334 39.8
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 8.7e-42 175.3 328 41.5
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 1.1e-41 174.9 351 37.3
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.1e-41 174.9 311 40.2
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 1.9e-41 174.1 299 40.1
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 2.5e-41 173.7 332 40.1
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 2.5e-41 173.7 307 40.7
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.3e-41 173.3 341 39.6
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 3.3e-41 173.3 335 40.0
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 7.4e-41 172.2 347 40.6
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 1.3e-40 171.4 313 39.9
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 1.3e-40 171.4 340 40.3
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.3e-40 171.4 279 43.4
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 2.8e-40 170.2 344 38.7
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 3.7e-40 169.9 353 38.8
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 4.8e-40 169.5 285 40.0
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 4.8e-40 169.5 331 38.1
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 4.8e-40 169.5 331 38.1
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 6.2e-40 169.1 298 39.9
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 1.8e-39 167.5 341 38.7
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 4.0e-39 166.4 285 41.8
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 6.9e-39 165.6 333 38.7
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 9.0e-39 165.2 275 43.6
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 9.0e-39 165.2 356 37.6
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 9.0e-39 165.2 416 35.1
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 2.0e-38 164.1 303 40.9
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 4.5e-38 162.9 303 41.3
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 5.8e-38 162.5 254 43.3
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 5.8e-38 162.5 296 41.2
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 7.6e-38 162.2 307 40.1
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 1.7e-37 161.0 286 41.6
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.2e-37 160.6 346 39.3
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.9e-37 160.2 311 38.6
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 3.8e-37 159.8 341 36.7
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 3.8e-37 159.8 300 39.7
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 4.9e-37 159.5 347 38.3
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 6.4e-37 159.1 351 35.6
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 8.4e-37 158.7 345 37.1
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 4.2e-36 156.4 328 38.4
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 9.3e-36 155.2 299 38.8
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 1.6e-35 154.5 251 42.2
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 2.1e-35 154.1 315 39.4
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 2.1e-35 154.1 303 38.9
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 2.7e-35 153.7 294 37.4
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 3.5e-35 153.3 302 39.1
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 4.6e-35 152.9 359 37.6
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 7.9e-35 152.1 300 39.3
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 1.0e-34 151.8 261 41.0
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 1.3e-34 151.4 305 40.3
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 1.3e-34 151.4 334 37.1
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 1.8e-34 151.0 298 39.6
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 1.8e-34 151.0 288 38.9
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 2.3e-34 150.6 288 38.9
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.0e-34 150.2 281 41.6
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 5.1e-34 149.4 288 39.9
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 6.7e-34 149.1 294 38.4
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 8.7e-34 148.7 313 39.3
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 8.7e-34 148.7 357 36.1
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 8.7e-34 148.7 303 37.6
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.1e-33 148.3 295 36.9
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.1e-33 148.3 283 38.2
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 1.1e-33 148.3 268 41.0
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 1.9e-33 147.5 364 34.9
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 3.3e-33 146.7 301 37.9
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 4.3e-33 146.4 291 38.5
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 4.3e-33 146.4 260 41.2
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 1.3e-32 144.8 293 35.5
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 2.1e-32 144.1 299 38.1
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 2.8e-32 143.7 296 36.1
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 4.8e-32 142.9 193 47.7
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 4.8e-32 142.9 199 46.2
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 6.2e-32 142.5 300 37.0
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 8.2e-32 142.1 298 36.6
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 8.2e-32 142.1 301 36.9
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 8.2e-32 142.1 278 39.2
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 4.0e-31 139.8 294 37.8
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 5.3e-31 139.4 352 35.8
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 5.3e-31 139.4 298 37.6
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 5.3e-31 139.4 306 38.2
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 9.0e-31 138.7 298 36.2
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 3.4e-30 136.7 312 38.5
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 7.6e-30 135.6 334 34.4
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.7e-29 134.4 303 37.0
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 1.7e-29 134.4 300 37.0
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 3.8e-29 133.3 293 36.2
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 3.8e-29 133.3 342 35.1
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 3.8e-29 133.3 327 33.9
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 1.4e-28 131.3 280 35.7
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 9.3e-28 128.6 211 40.8
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 1.2e-27 128.3 176 44.3
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 1.2e-27 128.3 176 44.3
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 1.0e-26 125.2 189 42.3
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.3e-26 124.0 312 34.3
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.3e-26 124.0 329 33.7
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 5.1e-26 122.9 297 35.0
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.5e-25 121.3 332 33.1
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.7e-24 116.7 327 33.3
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.1e-23 115.2 280 35.4
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 1.8e-23 114.4 237 34.6
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 5.3e-23 112.8 308 36.0
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 6.9e-23 112.5 136 55.1
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 5.0e-21 106.3 107 58.9
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 4.2e-20 103.2 226 36.7
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 1.6e-19 101.3 85 64.7
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 4.6e-19 99.8 235 36.2
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 7.9e-19 99.0 310 31.3
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 1.8e-18 97.8 202 37.6
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 3.9e-18 96.7 321 31.8
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 3.9e-18 96.7 258 33.7
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.1e-17 95.1 231 34.6
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 2.4e-15 87.4 242 31.8
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 2.5e-12 77.4 84 47.6
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 2.7e-11 73.9 159 35.2
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 2.0e-09 67.8 96 42.7
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.6e-09 67.4 183 30.6
CARHR038130 Cardamine hirsuta HOM05D002346 ORTHO05D002452 9.7e-09 65.5 175 32.0
Pp3c6_23650 Physcomitrium patens HOM05D002346 ORTHO05D002452 3.7e-08 63.5 149 37.6
EL10Ac8g19004 Beta vulgaris HOM05D001047 ORTHO05D000768 6.3e-08 62.8 143 35.0
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 6.3e-08 62.8 106 40.6
Pp3c16_13490 Physcomitrium patens HOM05D002346 ORTHO05D002452 1.4e-07 61.6 136 35.3
Ca_25347_v3 Cicer arietinum L. HOM05D002346 ORTHO05D002452 2.4e-07 60.8 153 34.0
Ah.09g229090 Amaranthus hybridus HOM05D001047 ORTHO05D000768 4.1e-07 60.1 134 32.8
SEGI_05082 Sequoiadendron giganteum HOM05D012961 ORTHO05D000768 4.1e-07 60.1 123 34.1
Glyma.09G077500 Glycine max HOM05D001047 ORTHO05D000768 7.0e-07 59.3 155 33.5
HanXRQChr08g0212431 Helianthus annuus HOM05D002346 ORTHO05D002452 7.0e-07 59.3 151 33.1
Potri.006G217200 Populus trichocarpa HOM05D001047 ORTHO05D000768 7.0e-07 59.3 172 30.2
PGR142G0155 Punica granatum HOM05D001047 ORTHO05D000768 7.0e-07 59.3 139 34.5
AT1G48500 Arabidopsis thaliana HOM05D002346 ORTHO05D002452 9.1e-07 58.9 146 31.5
ATR0753G139 Amborella trichopoda HOM05D002346 ORTHO05D002452 1.2e-06 58.5 164 29.3
Glyma.15G184900 Glycine max HOM05D001047 ORTHO05D000768 2.0e-06 57.8 155 32.9
Lsat_1_v5_gn_8_45621 Lactuca sativa HOM05D002346 ORTHO05D002452 2.0e-06 57.8 182 30.2
Aa31LG7G3900 Aethionema arabicum HOM05D001047 ORTHO05D000768 2.6e-06 57.4 132 34.1
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 2.6e-06 57.4 182 28.6
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 2.6e-06 57.4 44 72.7
Eucgr.C00753 Eucalyptus grandis HOM05D001047 ORTHO05D000768 2.6e-06 57.4 124 33.1
Manes.06G004000 Manihot esculenta HOM05D002346 ORTHO05D002452 2.6e-06 57.4 190 27.4
SalBow6G5797 Salvia bowleyana HOM05D001047 ORTHO05D000768 2.6e-06 57.4 191 28.8
Glyma.09G071600 Glycine max HOM05D001047 ORTHO05D000768 3.5e-06 57.0 182 30.8
Hund18677 Selenicereus undatus HOM05D001047 ORTHO05D000768 3.5e-06 57.0 185 28.1
Potri.018G047100 Populus trichocarpa HOM05D001047 ORTHO05D000768 4.5e-06 56.6 131 33.6
GSVIVG01008453001 Vitis vinifera HOM05D002346 ORTHO05D002452 4.5e-06 56.6 203 27.6
Zm00001eb327450 Zea mays HOM05D001047 ORTHO05D000768 4.5e-06 56.6 167 29.3
CANSAT56G2853 Cannabis sativa HOM05D001047 ORTHO05D000768 5.9e-06 56.2 156 27.6
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 5.9e-06 56.2 95 41.1
Glyma.15G179600 Glycine max HOM05D001047 ORTHO05D000768 5.9e-06 56.2 128 35.2
Sed0011871 Sechium edule HOM05D002346 ORTHO05D002452 5.9e-06 56.2 149 31.5
arahy.Tifrunner.gnm1.ann1.5M7JWE Arachis hypogaea HOM05D002346 ORTHO05D002452 7.7e-06 55.8 228 28.5


User provided reference genes

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