Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 1.0e-232 809.7 408 100.0
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 5.9e-127 458.4 405 59.8
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 7.9e-124 448.0 403 60.0
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 5.1e-123 445.3 397 58.7
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 2.2e-118 429.9 400 57.8
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 1.4e-107 394.0 395 52.9
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 8.8e-107 391.3 396 52.8
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 9.7e-106 387.9 411 52.3
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 4.8e-105 385.6 396 52.5
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 8.2e-105 384.8 396 52.5
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.4e-104 384.0 397 52.9
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 2.0e-103 380.2 405 52.3
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 5.0e-102 375.6 394 51.3
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 6.5e-102 375.2 402 51.2
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 8.5e-102 374.8 402 51.2
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.5e-101 373.2 404 51.2
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 3.2e-101 372.9 403 50.6
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 7.2e-101 371.7 404 50.7
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 7.2e-101 371.7 403 51.1
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 9.4e-101 371.3 395 50.9
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 3.6e-100 369.4 395 50.6
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 4.7e-100 369.0 403 50.9
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 8.0e-100 368.2 390 52.1
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 1.8e-99 367.1 395 50.6
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.8e-99 367.1 404 50.2
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 5.2e-99 365.5 401 49.9
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 5.2e-99 365.5 390 52.1
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 8.8e-99 364.8 400 49.5
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 1.5e-98 364.0 390 51.3
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 1.5e-98 364.0 390 50.3
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 1.5e-98 364.0 401 49.9
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 2.0e-98 363.6 400 49.8
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 3.4e-98 362.8 391 50.1
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 4.4e-98 362.5 400 50.5
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 5.7e-98 362.1 397 52.1
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 7.5e-98 361.7 428 49.1
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 1.1e-96 357.8 401 49.9
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 1.4e-96 357.5 403 50.4
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 1.4e-96 357.5 402 49.8
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 2.4e-96 356.7 400 49.5
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 3.1e-96 356.3 404 49.8
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 4.1e-96 355.9 405 48.4
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 5.3e-96 355.5 392 50.3
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 5.3e-96 355.5 394 51.3
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 9.1e-96 354.8 392 50.3
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 1.2e-95 354.4 404 48.5
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.6e-95 354.0 400 49.2
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 2.7e-95 353.2 388 50.0
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 2.7e-95 353.2 401 48.6
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 7.7e-95 351.7 413 49.6
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 1.3e-94 350.9 389 49.1
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 2.2e-94 350.1 394 49.2
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 2.2e-94 350.1 408 49.0
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 2.2e-94 350.1 400 49.2
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 3.8e-94 349.4 394 51.3
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 6.5e-94 348.6 394 49.5
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 1.5e-93 347.4 393 49.9
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 1.9e-93 347.1 393 48.9
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 1.9e-93 347.1 393 49.4
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 2.5e-93 346.7 411 48.2
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 3.2e-93 346.3 398 49.5
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 3.2e-93 346.3 408 49.0
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 4.2e-93 345.9 393 49.9
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 4.2e-93 345.9 400 50.0
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 5.5e-93 345.5 398 49.0
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 9.4e-93 344.7 409 48.2
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 1.6e-92 344.0 403 48.1
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 1.6e-92 344.0 390 49.0
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 2.7e-92 343.2 442 45.5
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 2.7e-92 343.2 398 47.5
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 3.6e-92 342.8 396 46.7
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 3.6e-92 342.8 396 49.0
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 4.7e-92 342.4 418 46.9
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 1.0e-91 341.3 393 48.9
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 1.8e-91 340.5 397 50.4
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 6.8e-91 338.6 390 48.5
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 8.8e-91 338.2 391 48.6
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 2.0e-90 337.0 419 46.3
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 2.6e-90 336.7 421 46.8
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 2.6e-90 336.7 392 46.4
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 9.8e-90 334.7 410 46.3
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 9.8e-90 334.7 470 42.3
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.7e-89 334.0 408 46.3
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 3.7e-89 332.8 397 49.6
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 6.3e-89 332.0 412 45.4
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 1.8e-88 330.5 407 47.4
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 1.2e-87 327.8 332 53.3
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 5.9e-87 325.5 389 45.0
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 3.6e-84 316.2 434 42.9
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 4.7e-84 315.8 409 46.0
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 2.3e-83 313.5 352 46.3
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.5e-82 310.8 398 46.0
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 2.0e-82 310.5 388 45.6
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 3.7e-81 306.2 412 43.4
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 2.7e-79 300.1 388 43.8
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 3.9e-78 296.2 392 45.4
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 1.4e-75 287.7 283 52.7
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 1.4e-75 287.7 406 42.6
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 1.5e-74 284.3 418 41.4
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 3.9e-70 269.6 303 50.8
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 1.1e-69 268.1 266 54.9
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 5.1e-62 242.7 404 39.9
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 1.5e-61 241.1 299 45.2
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 4.3e-61 239.6 355 38.3
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 8.1e-60 235.3 271 50.6
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 4.9e-57 226.1 387 36.4
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 7.1e-56 222.2 315 44.1
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 2.7e-55 220.3 411 36.0
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-55 220.3 228 52.2
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 2.3e-54 217.2 389 37.3
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 3.9e-54 216.5 389 37.0
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 2.8e-52 210.3 385 36.6
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 1.5e-50 204.5 304 38.8
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 9.3e-48 195.3 398 35.4
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 5.1e-46 189.5 185 53.5
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 1.1e-45 188.3 398 34.2
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.1e-43 181.8 186 52.2
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 2.3e-38 164.1 260 42.3
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 7.3e-37 159.1 254 38.2
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 7.3e-37 159.1 294 37.8
AagrBONN_evm.TU.Sc2ySwM_228.3229 Anthoceros agrestis HOM05D011762 ORTHO05D014803 1.1e-35 155.2 254 39.0
ATR0665G626 Amborella trichopoda HOM05D004826 ORTHO05D006367 1.6e-31 141.4 125 56.8
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 1.5e-26 124.8 282 35.8
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 1.4e-24 118.2 103 54.4
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 1.6e-23 114.8 261 36.0
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 6.0e-23 112.8 87 58.6
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 3.0e-22 110.5 97 56.7
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 1.4e-19 101.7 269 26.8
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 7.6e-18 95.9 341 28.2
BcaC05g24557 Brassica carinata HOM05D001359 ORTHO05D001200 1.7e-17 94.7 221 37.1
MCO04G388 Micromonas commoda HOM05D004826 ORTHO05D006367 1.6e-15 88.2 368 23.9
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 1.8e-14 84.7 173 36.4
QL12p021035 Quercus lobata HOM05D004826 ORTHO05D006367 9.7e-13 79.0 204 32.8
Nitab4.5_0025955g0010 Nicotiana tabacum HOM05D004826 ORTHO05D006367 1.3e-12 78.6 114 39.5
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 1.6e-12 78.2 71 49.3
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 2.8e-12 77.4 71 49.3
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 2.4e-11 74.3 100 44.0
COL.COLO4_05144 Corchorus olitorius HOM05D004826 ORTHO05D006367 1.7e-09 68.2 81 45.7
PRCOL_00006778 Prasinoderma coloniale HOM05D004826 ORTHO05D006367 1.7e-09 68.2 309 26.2
arahy.Tifrunner.gnm1.ann1.DV54YZ Arachis hypogaea HOM05D004826 ORTHO05D006367 2.9e-09 67.4 70 51.4
Sabra02G0041400 Salix brachista HOM05D004826 ORTHO05D006367 5.5e-08 63.2 48 60.4
Pp3c22_1410 Physcomitrium patens HOM05D000992 ORTHO05D001928 1.6e-07 61.6 208 26.4
TPR.G37444 Trifolium pratense HOM05D004758 ORTHO05D006063 1.6e-07 61.6 269 26.4
HanXRQChr03g0070771 Helianthus annuus HOM05D002999 ORTHO05D003137 2.1e-07 61.2 218 24.8
Eucgr.K03421 Eucalyptus grandis HOM05D002999 ORTHO05D003137 4.6e-07 60.1 217 20.7
Medtr4g105700 Medicago truncatula HOM05D004758 ORTHO05D006063 4.6e-07 60.1 269 24.9
SGA_v2.0_scaffold11G05777 Striga asiatica HOM05D002999 ORTHO05D003137 7.9e-07 59.3 204 23.0
Psat4g058120 Pisum sativum HOM05D004758 ORTHO05D006063 1.4e-06 58.5 269 24.9
Mapoly0022s0099 Marchantia polymorpha HOM05D002999 ORTHO05D003137 1.8e-06 58.2 229 24.0
SEGI_04850 Sequoiadendron giganteum HOM05D002999 ORTHO05D003137 1.8e-06 58.2 204 23.0
Ca_21920_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 2.3e-06 57.8 268 25.7
FAN12G3656 Fragaria x ananassa HOM05D000453 ORTHO05D000387 3.0e-06 57.4 203 25.1
Glyma.05G038000 Glycine max HOM05D004758 ORTHO05D006063 5.1e-06 56.6 273 22.7
Mapoly0068s0040 Marchantia polymorpha HOM05D000992 ORTHO05D001928 5.1e-06 56.6 148 26.4


User provided reference genes

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