Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 1.8e-127 459.1 218 100.0
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 1.8e-90 336.3 190 81.1
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 4.4e-89 331.6 190 80.0
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 2.9e-88 328.9 190 77.9
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 4.9e-88 328.2 190 78.4
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 6.4e-88 327.8 190 78.4
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 2.3e-85 319.3 191 75.9
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 3.3e-84 315.5 185 80.5
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 4.3e-84 315.1 190 73.7
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 4.7e-83 311.6 192 75.5
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 1.4e-82 310.1 190 74.2
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 1.4e-82 310.1 193 74.6
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 1.8e-82 309.7 194 75.8
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 4.0e-82 308.5 190 73.7
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 2.0e-81 306.2 190 72.6
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.4e-81 305.4 188 73.9
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 4.4e-81 305.1 190 73.7
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 4.4e-81 305.1 190 73.7
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 7.6e-81 304.3 191 75.9
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 7.6e-81 304.3 191 75.9
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 1.3e-80 303.5 194 70.6
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.7e-80 303.1 188 73.4
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.2e-80 302.8 190 73.2
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 2.2e-80 302.8 183 76.0
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 2.2e-80 302.8 190 73.2
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 2.9e-80 302.4 190 71.6
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 2.9e-80 302.4 190 73.2
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 4.9e-80 301.6 186 74.2
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 1.1e-79 300.4 186 73.7
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.1e-79 300.4 190 72.6
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.4e-79 300.1 190 72.6
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.9e-79 299.7 190 73.2
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 2.4e-79 299.3 193 72.0
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.4e-79 299.3 193 71.0
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 3.2e-79 298.9 182 73.6
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 3.2e-79 298.9 190 71.6
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 4.1e-79 298.5 192 74.0
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 5.4e-79 298.1 190 72.6
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 5.4e-79 298.1 190 70.0
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 2.7e-78 295.8 190 71.1
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 2.7e-78 295.8 210 67.6
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 4.6e-78 295.0 190 71.6
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 6.0e-78 294.7 196 69.9
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 7.8e-78 294.3 188 70.2
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.3e-77 293.5 190 70.0
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.3e-77 293.5 190 70.0
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 1.7e-77 293.1 190 72.1
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 1.7e-77 293.1 192 70.3
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.1e-76 290.4 184 70.7
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.1e-76 290.4 190 69.5
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 1.9e-76 289.7 190 68.4
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 5.6e-76 288.1 194 69.1
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.6e-75 285.4 190 68.9
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 3.6e-75 285.4 187 67.9
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 4.7e-75 285.0 190 69.5
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.7e-75 285.0 190 68.9
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 8.1e-75 284.3 190 70.5
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 8.1e-75 284.3 192 69.8
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 6.9e-74 281.2 190 67.9
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.0e-73 279.6 190 67.9
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 2.0e-73 279.6 190 67.4
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 3.4e-73 278.9 193 71.0
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 7.6e-73 277.7 192 69.3
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.7e-72 276.6 190 69.5
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.7e-72 276.6 182 71.4
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 1.7e-72 276.6 182 71.4
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 2.2e-72 276.2 182 71.4
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.1e-71 273.9 190 66.8
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.9e-71 273.1 190 65.3
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 3.2e-71 272.3 191 65.4
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 3.2e-71 272.3 192 66.1
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 4.2e-71 271.9 190 65.8
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 5.4e-71 271.6 186 68.3
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 9.3e-71 270.8 190 65.8
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.6e-70 270.0 188 66.0
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 2.1e-70 269.6 186 64.0
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 3.5e-70 268.9 187 64.7
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 4.6e-70 268.5 181 71.3
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 4.6e-70 268.5 188 65.4
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.3e-69 266.9 190 65.8
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 3.0e-69 265.8 184 67.4
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 3.9e-69 265.4 190 65.3
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 6.6e-69 264.6 192 65.1
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 8.7e-69 264.2 285 48.4
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 1.1e-68 263.8 188 64.4
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 1.9e-68 263.1 185 65.4
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 1.9e-68 263.1 266 50.4
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 3.3e-68 262.3 185 65.9
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 4.3e-68 261.9 185 64.9
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 1.3e-67 260.4 188 64.9
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 2.1e-67 259.6 163 74.8
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 1.1e-66 257.3 187 64.2
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 1.4e-66 256.9 190 63.7
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 2.4e-66 256.1 188 63.8
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 2.4e-66 256.1 188 63.8
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 4.0e-66 255.4 187 64.2
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 4.0e-66 255.4 187 64.2
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 5.3e-66 255.0 177 66.1
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 6.9e-66 254.6 187 64.2
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 9.0e-66 254.2 190 65.3
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 1.2e-65 253.8 187 62.6
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 1.5e-65 253.4 187 63.6
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.5e-65 253.4 185 61.6
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 3.4e-65 252.3 185 63.2
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 4.5e-65 251.9 190 62.6
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 4.5e-65 251.9 190 64.2
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 5.8e-65 251.5 182 64.8
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 7.6e-65 251.1 197 61.4
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 9.9e-65 250.8 184 62.5
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 2.4e-63 246.1 180 63.3
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 6.7e-61 238.0 165 69.7
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 8.7e-61 237.7 185 59.5
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 1.5e-60 236.9 181 57.5
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.5e-60 236.1 178 62.9
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.8e-58 229.9 199 56.8
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 4.0e-58 228.8 130 73.8
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.0e-58 228.8 188 60.1
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 4.5e-57 225.3 191 57.6
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 1.1e-55 220.7 202 55.0
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 9.3e-55 217.6 139 76.3
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 6.0e-54 214.9 276 41.3
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 6.0e-54 214.9 182 54.4
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 6.7e-53 211.5 190 54.2
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 2.5e-52 209.5 117 72.6
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 5.6e-52 208.4 144 66.7
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 5.6e-52 208.4 173 58.4
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 7.4e-52 208.0 145 66.9
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 9.6e-52 207.6 188 53.7
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 8.1e-51 204.5 162 60.5
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 3.1e-50 202.6 184 54.9
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 3.1e-50 202.6 156 61.5
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 3.1e-50 202.6 156 59.6
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 9.0e-50 201.1 185 50.3
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 9.0e-50 201.1 173 56.6
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.2e-49 200.7 184 54.9
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 1.3e-48 197.2 189 50.8
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.7e-48 196.8 194 56.2
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 4.9e-48 195.3 189 49.2
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.3e-45 187.2 183 49.2
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 3.9e-45 185.7 185 44.3
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 5.7e-44 181.8 184 45.7
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 1.2e-41 174.1 92 75.0
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 1.3e-40 170.6 194 42.3
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 2.9e-40 169.5 138 60.1
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 3.3e-36 156.0 190 43.7
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 5.7e-36 155.2 190 43.2
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 2.8e-35 152.9 186 41.9
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 1.4e-34 150.6 182 45.6
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 1.4e-34 150.6 182 45.6
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 5.3e-34 148.7 182 44.5
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 5.9e-33 145.2 210 40.5
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 7.7e-33 144.8 131 53.4
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.1e-26 124.4 96 58.3
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.9e-25 118.6 95 56.8
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 2.0e-17 93.6 52 73.1
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 6.7e-13 78.6 153 34.0
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 7.5e-12 75.1 61 68.9
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 6.3e-11 72.0 150 28.0
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 1.4e-10 70.9 144 29.2
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 1.4e-10 70.9 39 76.9
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 1.8e-10 70.5 144 30.6
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 2.4e-10 70.1 145 28.3
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 4.1e-10 69.3 145 27.6
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 7.0e-10 68.6 144 27.8
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 7.0e-10 68.6 144 29.2
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.7e-09 66.6 41 58.5
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 5.9e-09 65.5 144 29.9
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 1.7e-08 63.9 146 28.1
PGSC0003DMG400006141 Solanum tuberosum HOM05D006348 ORTHO05D008261 1.5e-07 60.8 144 28.5
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 1.5e-07 60.8 108 32.4
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 4.7e-06 55.8 184 26.6
MBI15_g39225_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 8.0e-06 55.1 52 51.9


User provided reference genes

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