Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZV61IE Arachis hypogaea HOM05D005164 ORTHO05D006398 2.1e-99 365.9 221 100.0
arahy.Tifrunner.gnm1.ann1.ABX6XB Arachis hypogaea HOM05D005164 ORTHO05D006398 4.7e-62 241.9 183 82.0
arahy.Tifrunner.gnm1.ann1.2K5AT5 Arachis hypogaea HOM05D005164 ORTHO05D006398 1.5e-28 130.6 73 91.8
arahy.Tifrunner.gnm1.ann1.D3INNH Arachis hypogaea HOM05D005164 ORTHO05D006398 7.5e-20 101.7 69 81.2
arahy.Tifrunner.gnm1.ann1.R33BY8 Arachis hypogaea HOM05D005164 ORTHO05D006398 7.5e-20 101.7 69 81.2
HanXRQChr02g0040181 Helianthus annuus HOM05D005164 ORTHO05D006398 9.2e-18 94.7 85 64.7
MD15G1029900 Malus domestica HOM05D005164 ORTHO05D006398 9.2e-18 94.7 66 77.3
Ca_25003_v3 Cicer arietinum L. HOM05D005164 ORTHO05D006398 1.2e-17 94.4 65 80.0
TPR.G3648 Trifolium pratense HOM05D005164 ORTHO05D006398 1.2e-17 94.4 65 80.0
Lj3g0003260 Lotus japonicus HOM05D005164 ORTHO05D006398 2.7e-17 93.2 73 74.0
CiPaw.16G055400 Carya illinoinensis HOM05D005164 ORTHO05D006398 3.5e-17 92.8 71 71.8
QL02p007897 Quercus lobata HOM05D005164 ORTHO05D006398 3.5e-17 92.8 71 71.8
Duzib041G0411 Durio zibethinus HOM05D005164 ORTHO05D006398 6.0e-17 92.0 66 75.8
Glyma.09G231100 Glycine max HOM05D005164 ORTHO05D006398 6.0e-17 92.0 66 77.3
Glyma.12G005400 Glycine max HOM05D005164 ORTHO05D006398 6.0e-17 92.0 66 77.3
Ciclev10001386m.g Citrus clementina HOM05D005164 ORTHO05D006398 7.8e-17 91.7 66 75.8
COL.COLO4_26343 Corchorus olitorius HOM05D005164 ORTHO05D006398 1.0e-16 91.3 68 73.5
Lsat_1_v5_gn_1_17561 Lactuca sativa HOM05D005164 ORTHO05D006398 1.0e-16 91.3 85 61.2
CANSAT25G0119 Cannabis sativa HOM05D005164 ORTHO05D006398 1.3e-16 90.9 66 74.2
CANSAT64G0480 Cannabis sativa HOM05D005164 ORTHO05D006398 1.3e-16 90.9 66 74.2
CiPaw.15G075600 Carya illinoinensis HOM05D005164 ORTHO05D006398 1.3e-16 90.9 71 69.0
MD08G1033300 Malus domestica HOM05D005164 ORTHO05D006398 1.3e-16 90.9 66 74.2
Psat3g167280 Pisum sativum HOM05D005164 ORTHO05D006398 1.3e-16 90.9 72 70.8
Cfa018135 Carpinus fangiana HOM05D005164 ORTHO05D006398 1.7e-16 90.5 71 69.0
Sabra14G0141000 Salix brachista HOM05D005164 ORTHO05D006398 1.7e-16 90.5 65 75.4
VMungo1127G0366 Vigna mungo HOM05D005164 ORTHO05D006398 1.7e-16 90.5 67 74.6
Cpa.g.sc64.68 Carica papaya HOM05D005164 ORTHO05D006398 2.3e-16 90.1 66 72.7
Manes.18G028500 Manihot esculenta HOM05D005164 ORTHO05D006398 2.3e-16 90.1 66 74.2
Thecc.08G024200 Theobroma cacao HOM05D005164 ORTHO05D006398 3.0e-16 89.7 66 74.2
Atru.chr13.515 Acer truncatum HOM05D005164 ORTHO05D006398 3.9e-16 89.4 66 72.7
Prupe.1G381600 Prunus persica HOM05D005164 ORTHO05D006398 3.9e-16 89.4 66 72.7
Actinidia15313 Actinidia chinensis HOM05D005164 ORTHO05D006398 5.1e-16 89.0 76 67.1
Actinidia22558 Actinidia chinensis HOM05D005164 ORTHO05D006398 5.1e-16 89.0 76 67.1
Gohir.A05G260000 Gossypium hirsutum HOM05D005164 ORTHO05D006398 5.1e-16 89.0 73 67.1
Gorai.009G273800 Gossypium raimondii HOM05D005164 ORTHO05D006398 5.1e-16 89.0 73 67.1
Phvul.011G006200 Phaseolus vulgaris HOM05D005164 ORTHO05D006398 5.1e-16 89.0 66 74.2
Potri.002G263200 Populus trichocarpa HOM05D005164 ORTHO05D006398 5.1e-16 89.0 65 73.8
SalBow8G2733 Salvia bowleyana HOM05D005164 ORTHO05D006398 5.1e-16 89.0 66 69.7
TWI56G0324 Tripterygium wilfordii HOM05D005164 ORTHO05D006398 5.1e-16 89.0 66 71.2
CAN.G1126.40 Capsicum annuum HOM05D005164 ORTHO05D006398 6.6e-16 88.6 66 72.7
Migut.N00498 Erythranthe guttata HOM05D005164 ORTHO05D006398 6.6e-16 88.6 71 66.2
Peaxi162Scf00690g00117 Petunia axillaris HOM05D005164 ORTHO05D006398 6.6e-16 88.6 66 72.7
Solyc04g080160.3 Solanum lycopersicum HOM05D005164 ORTHO05D006398 6.6e-16 88.6 66 72.7
Sopen04g033750 Solanum pennellii HOM05D005164 ORTHO05D006398 6.6e-16 88.6 66 72.7
PGSC0003DMG400005163 Solanum tuberosum HOM05D005164 ORTHO05D006398 6.6e-16 88.6 66 72.7
ECA247G1488 Erigeron canadensis HOM05D005164 ORTHO05D006398 8.6e-16 88.2 85 61.2
Manes.05G161900 Manihot esculenta HOM05D005164 ORTHO05D006398 8.6e-16 88.2 65 70.8
Potri.014G180800 Populus trichocarpa HOM05D005164 ORTHO05D006398 8.6e-16 88.2 65 73.8
Gohir.D05G261900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.1e-15 87.8 66 71.2
Hund21200 Selenicereus undatus HOM05D005164 ORTHO05D006398 1.1e-15 87.8 72 65.3
Gohir.A03G078200 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.5e-15 87.4 66 72.7
Gohir.D02G094300 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.5e-15 87.4 66 72.7
Gorai.005G107200 Gossypium raimondii HOM05D005164 ORTHO05D006398 1.5e-15 87.4 66 72.7
vmacro21627 Vaccinium macrocarpon HOM05D005164 ORTHO05D006398 1.5e-15 87.4 66 71.2
DCAR_019523 Daucus carota HOM05D005164 ORTHO05D006398 1.9e-15 87.0 65 72.3
Duzib093G0265 Durio zibethinus HOM05D005164 ORTHO05D006398 1.9e-15 87.0 66 71.2
Medtr0173s0030 Medicago truncatula HOM05D005164 ORTHO05D006398 2.5e-15 86.7 65 73.8
PGR031G3751 Punica granatum HOM05D005164 ORTHO05D006398 3.3e-15 86.3 66 68.2
Rhsim06G0035000 Rhododendron simsii HOM05D005164 ORTHO05D006398 4.3e-15 85.9 66 69.7
GSVIVG01009684001 Vitis vinifera HOM05D005164 ORTHO05D006398 4.3e-15 85.9 92 54.3
RcHm_v2.0_Chr6g0300751 Rosa chinensis HOM05D005164 ORTHO05D006398 5.6e-15 85.5 66 69.7
Aqoxy6G01049 Aquilegia oxysepala HOM05D005164 ORTHO05D006398 7.3e-15 85.1 66 68.2
Lj4C784T1 Lonicera japonica HOM05D005164 ORTHO05D006398 7.3e-15 85.1 76 63.2
MSTRG.24294 Avicennia marina HOM05D005164 ORTHO05D006398 9.5e-15 84.7 67 68.7
Gohir.D01G104900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 9.5e-15 84.7 65 70.8
Gorai.002G128900 Gossypium raimondii HOM05D005164 ORTHO05D006398 9.5e-15 84.7 65 70.8
Sc02g0006310 Simmondsia chinensis HOM05D005164 ORTHO05D006398 1.6e-14 84.0 77 62.3
TAR376G0296 Trochodendron aralioides HOM05D005164 ORTHO05D006398 2.1e-14 83.6 73 65.8
EL10Ac8g20456 Beta vulgaris HOM05D005164 ORTHO05D006398 2.8e-14 83.2 71 63.4
A02p27610 Brassica napus HOM05D005164 ORTHO05D006398 2.8e-14 83.2 93 53.8
BolC2t10406H Brassica oleracea HOM05D005164 ORTHO05D006398 2.8e-14 83.2 93 53.8
BraA02t07794Z Brassica rapa HOM05D005164 ORTHO05D006398 2.8e-14 83.2 93 53.8
Gohir.A01G116500 Gossypium hirsutum HOM05D005164 ORTHO05D006398 2.8e-14 83.2 65 69.2
Dinv36062 Davidia involucrata HOM05D005164 ORTHO05D006398 3.6e-14 82.8 66 69.7
Eucgr.F01909 Eucalyptus grandis HOM05D005164 ORTHO05D006398 3.6e-14 82.8 77 57.1
Sed0021376 Sechium edule HOM05D005164 ORTHO05D006398 3.6e-14 82.8 71 64.8
ClCG05G019140 Citrullus lanatus HOM05D005164 ORTHO05D006398 4.7e-14 82.4 71 66.2
MELO3C003848.2 Cucumis melo HOM05D005164 ORTHO05D006398 4.7e-14 82.4 71 66.2
CsaV3_3G045000 Cucumis sativus L. HOM05D005164 ORTHO05D006398 4.7e-14 82.4 71 66.2
Hma1.2p1_0023F.1_g014900 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 4.7e-14 82.4 73 64.4
Carub.0008s0578 Capsella rubella HOM05D005164 ORTHO05D006398 6.2e-14 82.0 66 66.7
Oeu009868.2 Olea europaea HOM05D005164 ORTHO05D006398 6.2e-14 82.0 66 63.6
Nn5g29540 Nelumbo nucifera HOM05D005164 ORTHO05D006398 8.1e-14 81.6 66 68.2
AUR62014895 Chenopodium quinoa HOM05D005164 ORTHO05D006398 1.4e-13 80.9 73 60.3
Cc10_g03080 Coffea canephora HOM05D005164 ORTHO05D006398 1.4e-13 80.9 66 65.2
THA.LOC104822841 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 1.4e-13 80.9 66 65.2
AT5G42970 Arabidopsis thaliana HOM05D005164 ORTHO05D006398 1.8e-13 80.5 66 66.7
BcaC03g16546 Brassica carinata HOM05D005164 ORTHO05D006398 1.8e-13 80.5 93 52.7
C02p43640 Brassica napus HOM05D005164 ORTHO05D006398 1.8e-13 80.5 93 52.7
BcaB07g30597 Brassica carinata HOM05D005164 ORTHO05D006398 2.3e-13 80.1 73 61.6
Sed0001534 Sechium edule HOM05D005164 ORTHO05D006398 2.3e-13 80.1 71 64.8
Aa31LG9G13090 Aethionema arabicum HOM05D005164 ORTHO05D006398 3.1e-13 79.7 66 65.2
BcaC02g10785 Brassica carinata HOM05D005164 ORTHO05D006398 3.1e-13 79.7 93 51.6
C04p25110 Brassica napus HOM05D005164 ORTHO05D006398 3.1e-13 79.7 93 51.6
BolC4t24015H Brassica oleracea HOM05D005164 ORTHO05D006398 3.1e-13 79.7 93 51.6
CARHR181050 Cardamine hirsuta HOM05D005164 ORTHO05D006398 3.1e-13 79.7 71 62.0
AL8G17800 Arabidopsis lyrata HOM05D005164 ORTHO05D006398 4.0e-13 79.3 66 65.2
BcaC06g31734 Brassica carinata HOM05D005164 ORTHO05D006398 4.0e-13 79.3 66 65.2
Thhalv10003436m.g Eutrema salsugineum HOM05D005164 ORTHO05D006398 4.0e-13 79.3 66 65.2
FvH4_2g40000 Fragaria vesca HOM05D005164 ORTHO05D006398 4.0e-13 79.3 67 67.2
FAN27G0257 Fragaria x ananassa HOM05D005164 ORTHO05D006398 4.0e-13 79.3 67 67.2
MBI17_g39721_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 5.2e-13 79.0 66 65.2
THA.LOC104814156 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 5.2e-13 79.0 66 63.6
AUR62031100 Chenopodium quinoa HOM05D005164 ORTHO05D006398 8.9e-13 78.2 71 59.2
PSO541G6137 Papaver somniferum HOM05D005164 ORTHO05D006398 8.9e-13 78.2 92 51.1
PSO675G3600 Papaver somniferum HOM05D005164 ORTHO05D006398 8.9e-13 78.2 92 51.1
Zm00001eb008060 Zea mays HOM05D005164 ORTHO05D006398 8.9e-13 78.2 95 50.5
FAN15G2586 Fragaria x ananassa HOM05D005164 ORTHO05D006398 1.2e-12 77.8 67 65.7
A06p48120 Brassica napus HOM05D005164 ORTHO05D006398 1.5e-12 77.4 66 63.6
BraA06t27681Z Brassica rapa HOM05D005164 ORTHO05D006398 1.5e-12 77.4 66 63.6
Sp2g07720 Schrenkiella parvula HOM05D005164 ORTHO05D006398 1.5e-12 77.4 66 63.6
FAN20G1227 Fragaria x ananassa HOM05D005164 ORTHO05D006398 2.0e-12 77.0 67 65.7
ATR0733G076 Amborella trichopoda HOM05D005164 ORTHO05D006398 3.4e-12 76.3 66 63.6
Carub.0004s0266 Capsella rubella HOM05D005164 ORTHO05D006398 3.4e-12 76.3 66 62.1
Sopen04g033730 Solanum pennellii HOM05D005164 ORTHO05D006398 5.8e-12 75.5 66 63.6
Hma1.2p1_0469F.1_g159190 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 7.6e-12 75.1 84 57.1
Haze_17990 Corylus avellana HOM05D005164 ORTHO05D006398 9.9e-12 74.7 102 48.0
Os03g0197400 Oryza sativa ssp. japonica HOM05D005164 ORTHO05D006398 9.9e-12 74.7 68 61.8
CDE01G0241 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 8.4e-11 71.6 73 56.2
unitig_22.g6774 Utricularia gibba HOM05D005164 ORTHO05D006398 8.4e-11 71.6 63 60.3
CDE02G4403 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 1.9e-10 70.5 73 56.2
Nitab4.5_0010187g0010 Nicotiana tabacum HOM05D005164 ORTHO05D006398 6.0e-09 65.5 73 56.2
SEGI_27147 Sequoiadendron giganteum HOM05D005164 ORTHO05D006398 6.0e-09 65.5 64 56.2
arahy.Tifrunner.gnm1.ann1.XW6Y6R Arachis hypogaea HOM05D000003 ORTHO05D000022 3.9e-08 62.8 46 63.0
arahy.Tifrunner.gnm1.ann1.I6PHI5 Arachis hypogaea HOM05D000003 ORTHO05D000022 5.1e-08 62.4 49 61.2
AagrBONN_evm.TU.Sc2ySwM_117.2514 Anthoceros agrestis HOM05D005164 ORTHO05D006398 1.1e-07 61.2 75 44.0
Mapoly0072s0034 Marchantia polymorpha HOM05D005164 ORTHO05D006398 2.5e-07 60.1 66 45.5
HPP92_024905 Vanilla planifolia HOM05D005164 ORTHO05D006398 2.5e-07 60.1 66 51.5
arahy.Tifrunner.gnm1.ann1.9H0YUK Arachis hypogaea HOM05D000003 ORTHO05D000022 3.3e-07 59.7 51 54.9
Nitab4.5_0000110g0500 Nicotiana tabacum HOM05D005164 ORTHO05D006398 3.3e-07 59.7 46 69.6
Pp3c5_28450 Physcomitrium patens HOM05D005164 ORTHO05D006398 4.3e-07 59.3 76 42.1
arahy.Tifrunner.gnm1.ann1.KPZY4F Arachis hypogaea HOM05D000003 ORTHO05D000022 9.6e-07 58.2 46 56.5
SMO364G0673 Selaginella moellendorffii HOM05D005164 ORTHO05D006398 9.6e-07 58.2 73 43.8


User provided reference genes

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