Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 5.9e-246 854.0 499 100.0
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 2.1e-182 642.9 380 97.9
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 2.8e-115 419.9 382 64.4
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.8e-115 419.9 377 64.5
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.8e-114 417.2 374 64.2
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 6.5e-112 408.7 395 62.5
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 1.0e-109 401.4 382 62.8
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 1.4e-109 401.0 378 62.2
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 2.2e-107 393.7 391 60.4
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 1.3e-104 384.4 434 56.0
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 3.3e-87 326.6 373 55.5
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 9.5e-87 325.1 379 58.6
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.0e-85 321.6 381 59.6
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 4.9e-83 312.8 373 56.3
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 7.5e-76 288.9 377 51.5
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 4.9e-75 286.2 385 50.9
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 2.7e-73 280.4 381 48.3
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.8e-70 270.4 413 46.2
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 8.1e-70 268.9 381 49.3
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.4e-69 268.1 411 52.3
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 2.3e-69 267.3 402 53.2
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.5e-68 264.6 386 49.0
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 4.4e-68 263.1 381 47.8
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 4.4e-68 263.1 381 49.1
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 9.8e-68 261.9 394 43.9
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 1.1e-66 258.5 383 44.6
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.9e-66 257.7 383 45.2
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.2e-65 255.0 402 44.0
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.3e-64 251.5 400 44.5
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 1.3e-64 251.5 380 44.7
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.7e-64 251.1 400 44.5
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.7e-64 251.1 398 44.7
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 3.9e-64 250.0 393 47.3
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 3.9e-64 250.0 380 45.5
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 8.6e-64 248.8 380 43.2
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 8.6e-64 248.8 380 47.9
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 2.5e-63 247.3 390 45.9
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 2.5e-63 247.3 378 42.9
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.2e-62 245.0 378 42.6
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 2.8e-62 243.8 375 47.5
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 4.7e-62 243.0 413 44.6
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 8.1e-62 242.3 378 42.3
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.8e-61 241.1 383 44.1
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 3.1e-61 240.4 421 43.2
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 4.0e-61 240.0 372 47.3
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 5.2e-61 239.6 405 42.0
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 6.8e-61 239.2 381 43.8
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 3.4e-60 236.9 398 46.5
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 1.3e-59 235.0 416 43.8
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.7e-59 234.6 387 46.3
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 2.2e-59 234.2 378 44.7
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.4e-58 231.5 381 42.5
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 2.4e-58 230.7 396 46.0
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 2.4e-58 230.7 385 45.2
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.2e-58 230.3 384 43.0
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.1e-58 229.9 390 44.9
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 7.1e-58 229.2 390 44.9
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 7.1e-58 229.2 381 43.6
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 9.2e-58 228.8 381 45.9
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 1.2e-57 228.4 382 42.1
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 3.5e-57 226.9 390 46.4
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 4.6e-57 226.5 378 42.9
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.3e-56 224.9 378 42.9
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.3e-56 224.9 385 41.8
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.3e-56 224.2 387 43.4
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 5.1e-56 223.0 386 44.3
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 5.1e-56 223.0 376 45.7
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 6.6e-56 222.6 387 45.2
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.5e-55 221.5 378 43.1
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.9e-55 221.1 392 45.2
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 2.5e-55 220.7 378 42.9
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.6e-54 218.0 385 43.4
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.7e-54 216.5 390 43.6
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 2.4e-53 214.2 340 45.0
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 3.1e-53 213.8 410 43.2
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 6.8e-53 212.6 330 44.5
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 2.6e-52 210.7 399 43.1
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 4.4e-52 209.9 379 39.8
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.3e-51 208.4 382 42.1
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 6.4e-51 206.1 394 43.4
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 6.4e-51 206.1 386 42.2
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.1e-50 205.3 377 44.6
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 4.2e-50 203.4 258 52.7
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 7.1e-50 202.6 390 38.7
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 4.6e-49 199.9 331 44.7
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 6.0e-49 199.5 386 43.5
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 5.1e-48 196.4 350 40.3
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.3e-46 191.8 382 40.8
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.1e-46 191.0 380 44.7
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 2.1e-46 191.0 383 41.8
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 3.6e-46 190.3 390 43.3
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 3.6e-46 190.3 393 41.2
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 3.6e-46 190.3 393 41.2
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.4e-45 188.3 392 42.1
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 1.8e-45 188.0 388 41.5
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 9.0e-45 185.7 371 38.8
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 7.6e-44 182.6 380 41.6
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 9.9e-44 182.2 336 40.2
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.3e-43 181.8 368 38.9
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.3e-43 181.8 368 38.9
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 2.2e-43 181.0 379 40.4
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.9e-43 179.9 408 42.4
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 6.4e-43 179.5 417 42.2
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.1e-42 178.7 379 38.0
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.6e-41 174.9 405 40.2
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 2.7e-41 174.1 370 37.3
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 3.5e-41 173.7 377 41.6
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 3.5e-41 173.7 377 41.6
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 3.5e-41 173.7 377 41.6
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.0e-40 172.2 376 38.8
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 1.3e-40 171.8 330 42.1
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.3e-40 171.0 393 40.5
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 6.6e-40 169.5 371 39.9
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 6.6e-40 169.5 371 39.9
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 6.6e-40 169.5 361 39.9
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.1e-39 168.7 411 39.9
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 4.3e-39 166.8 380 38.2
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.3e-38 165.2 411 35.8
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.8e-38 164.1 186 54.3
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 3.6e-38 163.7 381 40.9
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 3.6e-38 163.7 381 40.9
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 4.0e-37 160.2 400 38.8
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.2e-36 158.7 396 40.2
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 2.9e-35 154.1 187 53.5
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 2.9e-35 154.1 404 33.4
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 2.9e-35 154.1 354 36.4
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 3.8e-35 153.7 378 34.4
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 3.2e-34 150.6 385 37.1
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 5.5e-34 149.8 150 59.3
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 8.7e-32 142.5 393 38.2
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.1e-30 137.9 272 41.9
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 4.8e-30 136.7 350 36.9
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 8.1e-30 136.0 382 35.3
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.5e-28 131.7 406 34.5
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 7.1e-26 122.9 380 33.7
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.1e-21 107.1 255 38.0
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.1e-17 94.7 225 40.0
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 8.7e-16 89.4 179 42.5
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 6.3e-14 83.2 347 29.1
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 1.8e-13 81.6 143 42.0
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.3e-11 75.5 188 37.2
Psat2g009520 Pisum sativum HOM05D005109 ORTHO05D006084 3.2e-10 70.9 80 55.0


User provided reference genes

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