Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZR7FTB Arachis hypogaea HOM05D004759 ORTHO05D005722 1.5e-133 479.6 243 100.0
arahy.Tifrunner.gnm1.ann1.8G8R7R Arachis hypogaea HOM05D004759 ORTHO05D005722 2.9e-113 412.1 267 83.9
arahy.Tifrunner.gnm1.ann1.B05S7J Arachis hypogaea HOM05D004759 ORTHO05D005722 8.3e-113 410.6 267 83.5
Medtr4g075610 Medicago truncatula HOM05D004759 ORTHO05D005722 1.9e-93 346.3 262 71.0
Glyma.11G097500 Glycine max HOM05D004759 ORTHO05D005722 2.5e-93 345.9 264 71.6
TPR.G17153 Trifolium pratense HOM05D004759 ORTHO05D005722 1.6e-92 343.2 262 71.0
Glyma.06G005900 Glycine max HOM05D004759 ORTHO05D005722 4.0e-91 338.6 262 71.0
Lalb_Chr19g0139561 Lupinus albus HOM05D004759 ORTHO05D005722 6.9e-91 337.8 263 69.6
Phvul.011G025600 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 9.0e-91 337.4 262 70.6
Lj1g0004015 Lotus japonicus HOM05D004759 ORTHO05D005722 7.6e-90 334.3 262 69.1
VMungo1127G1183 Vigna mungo HOM05D004759 ORTHO05D005722 2.9e-89 332.4 263 70.0
Sabra04G0112000 Salix brachista HOM05D004759 ORTHO05D005722 1.9e-88 329.7 258 69.0
Phvul.009G000900 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 9.3e-88 327.4 262 68.7
Ca_18993_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 1.2e-87 327.0 263 69.2
Psat7g178120 Pisum sativum HOM05D004759 ORTHO05D005722 1.6e-87 326.6 262 69.1
Duzib248G0603 Durio zibethinus HOM05D004759 ORTHO05D005722 1.3e-86 323.6 258 67.4
Potri.009G127800 Populus trichocarpa HOM05D004759 ORTHO05D005722 2.3e-86 322.8 258 65.9
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 3.9e-86 322.0 259 66.0
Glyma.04G006200 Glycine max HOM05D004759 ORTHO05D005722 5.1e-86 321.6 262 69.1
VMungo1309G1106 Vigna mungo HOM05D004759 ORTHO05D005722 6.7e-86 321.2 262 69.8
arahy.Tifrunner.gnm1.ann1.R4GM9V Arachis hypogaea HOM05D004759 ORTHO05D005722 1.5e-85 320.1 265 69.1
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 1.3e-84 317.0 258 64.7
QL11p047309 Quercus lobata HOM05D004759 ORTHO05D005722 1.3e-84 317.0 258 64.7
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 1.3e-84 317.0 258 64.3
Potri.004G166900 Populus trichocarpa HOM05D004759 ORTHO05D005722 2.8e-84 315.8 250 68.4
Manes.04G079000 Manihot esculenta HOM05D004759 ORTHO05D005722 6.2e-84 314.7 258 63.2
Gohir.A03G202700 Gossypium hirsutum HOM05D004759 ORTHO05D005722 8.1e-84 314.3 260 63.5
Gorai.005G251800 Gossypium raimondii HOM05D004759 ORTHO05D005722 2.4e-83 312.8 260 63.5
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 3.1e-83 312.4 259 64.5
Ciclev10028685m.g Citrus clementina HOM05D004759 ORTHO05D005722 4.0e-83 312.0 259 65.6
Duzib132G0429 Durio zibethinus HOM05D004759 ORTHO05D005722 5.3e-83 311.6 258 64.7
Atru.chr5.3204 Acer truncatum HOM05D004759 ORTHO05D005722 2.6e-82 309.3 260 63.8
Gohir.D02G224000 Gossypium hirsutum HOM05D004759 ORTHO05D005722 4.5e-82 308.5 260 61.9
CANSAT25G1906 Cannabis sativa HOM05D004759 ORTHO05D005722 9.9e-82 307.4 259 63.3
Eucgr.I01368 Eucalyptus grandis HOM05D004759 ORTHO05D005722 1.7e-81 306.6 255 64.7
TWI79G0483 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 1.7e-81 306.6 258 62.0
CiPaw.05G076100 Carya illinoinensis HOM05D004759 ORTHO05D005722 2.2e-81 306.2 260 63.8
Duzib052G1250 Durio zibethinus HOM05D004759 ORTHO05D005722 2.2e-81 306.2 255 66.3
Sabra09G0098000 Salix brachista HOM05D004759 ORTHO05D005722 2.2e-81 306.2 259 63.3
TAR376G0227 Trochodendron aralioides HOM05D004759 ORTHO05D005722 2.2e-81 306.2 259 63.7
FAN24G2027 Fragaria x ananassa HOM05D004759 ORTHO05D005722 4.9e-81 305.1 255 62.7
Lj5A186G40 Lonicera japonica HOM05D004759 ORTHO05D005722 6.4e-81 304.7 257 61.1
FvH4_2g02210 Fragaria vesca HOM05D004759 ORTHO05D005722 1.9e-80 303.1 255 62.4
PGSC0003DMG400001638 Solanum tuberosum HOM05D004759 ORTHO05D005722 2.5e-80 302.8 256 62.9
FAN15G1889 Fragaria x ananassa HOM05D004759 ORTHO05D005722 3.2e-80 302.4 255 62.4
arahy.Tifrunner.gnm1.ann1.T5CB16 Arachis hypogaea HOM05D004759 ORTHO05D005722 7.1e-80 301.2 193 85.0
RcHm_v2.0_Chr6g0245891 Rosa chinensis HOM05D004759 ORTHO05D005722 7.1e-80 301.2 261 61.3
Gorai.008G032900 Gossypium raimondii HOM05D004759 ORTHO05D005722 9.3e-80 300.8 259 64.9
Peaxi162Scf00362g01041 Petunia axillaris HOM05D004759 ORTHO05D005722 1.2e-79 300.4 257 63.0
Solyc01g111040.4 Solanum lycopersicum HOM05D004759 ORTHO05D005722 1.2e-79 300.4 256 62.5
Prupe.8G158800 Prunus persica HOM05D004759 ORTHO05D005722 2.1e-79 299.7 260 60.4
Sopen01g053100 Solanum pennellii HOM05D004759 ORTHO05D005722 3.5e-79 298.9 256 62.5
CAN.G588.16 Capsicum annuum HOM05D004759 ORTHO05D005722 4.6e-79 298.5 256 62.5
MD05G1114400 Malus domestica HOM05D004759 ORTHO05D005722 7.9e-79 297.7 257 61.1
ClCG02G004370 Citrullus lanatus HOM05D004759 ORTHO05D005722 1.3e-78 297.0 259 61.8
Rhsim11G0187000 Rhododendron simsii HOM05D004759 ORTHO05D005722 1.3e-78 297.0 259 61.4
FAN20G1238 Fragaria x ananassa HOM05D004759 ORTHO05D005722 2.3e-78 296.2 253 61.7
Manes.11G078000 Manihot esculenta HOM05D004759 ORTHO05D005722 2.3e-78 296.2 251 62.5
FAN27G2697 Fragaria x ananassa HOM05D004759 ORTHO05D005722 3.9e-78 295.4 257 61.5
Gohir.D12G032200 Gossypium hirsutum HOM05D004759 ORTHO05D005722 3.9e-78 295.4 251 65.3
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 6.7e-78 294.7 258 61.2
Gohir.A12G040100 Gossypium hirsutum HOM05D004759 ORTHO05D005722 1.1e-77 293.9 256 64.8
MD10G1116400 Malus domestica HOM05D004759 ORTHO05D005722 1.1e-77 293.9 258 60.9
Sed0015502 Sechium edule HOM05D004759 ORTHO05D005722 1.9e-77 293.1 259 61.0
Ca_15318_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 2.5e-77 292.7 258 64.3
Medtr3g117680 Medicago truncatula HOM05D004759 ORTHO05D005722 4.3e-77 292.0 257 64.2
vmacro02240 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 5.6e-77 291.6 258 60.5
vmacro22691 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 5.6e-77 291.6 258 60.5
PGR042G1303 Punica granatum HOM05D004759 ORTHO05D005722 9.6e-77 290.8 260 61.2
Hma1.2p1_0032F.1_g019720 Hydrangea macrophylla HOM05D004759 ORTHO05D005722 1.6e-76 290.0 258 62.4
Cc02_g16670 Coffea canephora HOM05D004759 ORTHO05D005722 2.1e-76 289.7 253 61.3
TPR.G38567 Trifolium pratense HOM05D004759 ORTHO05D005722 2.1e-76 289.7 260 63.1
MELO3C013383.2 Cucumis melo HOM05D004759 ORTHO05D005722 2.8e-76 289.3 257 59.5
CsaV3_7G000740 Cucumis sativus L. HOM05D004759 ORTHO05D005722 3.7e-76 288.9 257 59.5
Nitab4.5_0000283g0200 Nicotiana tabacum HOM05D004759 ORTHO05D005722 3.7e-76 288.9 256 61.3
Psat5g003440 Pisum sativum HOM05D004759 ORTHO05D005722 1.4e-75 287.0 260 62.7
TWI31G1308 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 2.4e-75 286.2 254 59.1
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 6.9e-75 284.6 269 57.2
ECA233G0594 Erigeron canadensis HOM05D004759 ORTHO05D005722 1.7e-73 280.0 258 59.7
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 2.9e-73 279.3 255 61.6
Sed0015287 Sechium edule HOM05D004759 ORTHO05D005722 2.9e-73 279.3 254 58.3
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 5.5e-72 275.0 265 57.7
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 5.5e-72 275.0 261 57.5
SalBow6G6339 Salvia bowleyana HOM05D004759 ORTHO05D005722 9.3e-72 274.2 258 57.0
HanXRQChr17g0555191 Helianthus annuus HOM05D004759 ORTHO05D005722 3.5e-71 272.3 258 57.0
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 4.6e-71 271.9 262 57.6
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 4.6e-71 271.9 261 57.5
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 4.6e-71 271.9 265 57.0
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 4.6e-71 271.9 256 57.8
Actinidia20479 Actinidia chinensis HOM05D004759 ORTHO05D005722 6.1e-71 271.6 261 56.3
PSO170G3415 Papaver somniferum HOM05D004759 ORTHO05D005722 1.8e-70 270.0 257 56.4
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 3.0e-70 269.2 258 57.8
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 3.9e-70 268.9 260 56.5
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 3.9e-70 268.9 259 56.8
Migut.B00161 Erythranthe guttata HOM05D004759 ORTHO05D005722 3.9e-70 268.9 256 57.4
THA.LOC104824783 Tarenaya hassleriana HOM05D004759 ORTHO05D005722 5.1e-70 268.5 251 58.6
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 8.7e-70 267.7 254 57.5
Carub.0007s0066 Capsella rubella HOM05D004759 ORTHO05D005722 1.1e-69 267.3 261 58.6
PSO700G0005 Papaver somniferum HOM05D004759 ORTHO05D005722 1.5e-69 266.9 257 55.6
BcaNung01966 Brassica carinata HOM05D004759 ORTHO05D005722 2.5e-69 266.2 265 57.4
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 2.2e-68 263.1 257 58.8
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 2.2e-68 263.1 257 58.8
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 4.8e-68 261.9 268 56.3
Glyma.12G023500 Glycine max HOM05D004759 ORTHO05D005722 6.3e-68 261.5 190 74.7
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 6.3e-68 261.5 256 55.9
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 1.4e-67 260.4 260 57.7
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 1.4e-67 260.4 260 57.7
Sp7g37010 Schrenkiella parvula HOM05D004759 ORTHO05D005722 1.8e-67 260.0 265 56.2
TAR628G0309 Trochodendron aralioides HOM05D004759 ORTHO05D005722 3.1e-67 259.2 253 58.5
Hund00052 Selenicereus undatus HOM05D004759 ORTHO05D005722 6.9e-67 258.1 277 51.3
Sed0012827 Sechium edule HOM05D000600 ORTHO05D000432 1.2e-66 257.3 240 58.3
MSTRG.5434 Avicennia marina HOM05D004759 ORTHO05D005722 5.9e-66 255.0 249 55.8
Os10g0177200 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 1.0e-65 254.2 257 52.1
MSTRG.27666 Avicennia marina HOM05D004759 ORTHO05D005722 2.2e-65 253.1 258 53.1
Actinidia00585 Actinidia chinensis HOM05D004759 ORTHO05D005722 2.5e-64 249.6 225 58.7
MSTRG.16864 Avicennia marina HOM05D004759 ORTHO05D005722 6.1e-63 245.0 259 52.1
Hund06394 Selenicereus undatus HOM05D004759 ORTHO05D005722 1.0e-62 244.2 260 52.3
Aqoxy5G01775 Aquilegia oxysepala HOM05D004759 ORTHO05D005722 3.0e-62 242.7 262 51.9
SHI05655 Sapria himalayana HOM05D004759 ORTHO05D005722 3.9e-62 242.3 284 53.2
Zm00001eb224230 Zea mays HOM05D004759 ORTHO05D005722 2.8e-60 236.1 272 49.6
Nitab4.5_0000980g0350 Nicotiana tabacum HOM05D004759 ORTHO05D005722 3.7e-60 235.7 254 53.9
Oeu055645.1 Olea europaea HOM05D004759 ORTHO05D005722 6.9e-59 231.5 253 50.6
ATR0481G015 Amborella trichopoda HOM05D004759 ORTHO05D005722 9.1e-59 231.1 251 50.2
CDE02G2774 Ceratophyllum demersum HOM05D004759 ORTHO05D005722 4.5e-58 228.8 258 49.6
Oeu002958.2 Olea europaea HOM05D004759 ORTHO05D005722 5.5e-56 221.9 253 49.8
Nn1g05877 Nelumbo nucifera HOM05D004759 ORTHO05D005722 2.1e-55 219.9 257 51.4
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 3.0e-54 216.1 254 48.8
Nn5g30165 Nelumbo nucifera HOM05D004759 ORTHO05D005722 3.9e-54 215.7 216 53.2
Zm00001eb010730 Zea mays HOM05D004759 ORTHO05D005722 5.3e-51 205.3 257 47.9
unitig_899.g15603 Utricularia gibba HOM05D004759 ORTHO05D005722 2.5e-48 196.4 256 43.4
HPP92_007135 Vanilla planifolia HOM05D004759 ORTHO05D005722 2.1e-47 193.4 251 44.2
SEGI_06358 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 8.2e-44 181.4 253 42.3
SEGI_27774 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 3.1e-43 179.5 250 42.8
HPP92_003533 Vanilla planifolia HOM05D004759 ORTHO05D005722 2.0e-42 176.8 258 42.6
Mapoly0103s0051 Marchantia polymorpha HOM05D004759 ORTHO05D005722 2.1e-39 166.8 246 37.0
Dinv41981 Davidia involucrata HOM05D004759 ORTHO05D005722 5.7e-37 158.7 149 60.4
Cc02_g16650 Coffea canephora HOM05D004759 ORTHO05D005722 3.1e-35 152.9 128 63.3
SEGI_21972 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 4.2e-32 142.5 237 34.2
unitig_21.g20808 Utricularia gibba HOM05D004759 ORTHO05D005722 5.5e-32 142.1 181 45.9
PSO675G1610 Papaver somniferum HOM05D004759 ORTHO05D005722 5.2e-30 135.6 259 35.1
PSO541G2336 Papaver somniferum HOM05D004759 ORTHO05D005722 8.8e-30 134.8 260 35.4
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 7.5e-29 131.7 256 35.5
Ciclev10030375m.g Citrus clementina HOM05D004759 ORTHO05D005722 8.3e-20 101.7 120 46.7
SEGI_16256 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 2.4e-19 100.1 170 35.9
DCAR_026360 Daucus carota HOM05D004759 ORTHO05D005722 3.2e-19 99.8 79 62.0
Cpa.g.sc37.205 Carica papaya HOM05D004759 ORTHO05D005722 9.2e-19 98.2 183 37.7
Pp3c5_21520 Physcomitrium patens HOM05D004759 ORTHO05D005722 1.3e-17 94.4 191 32.5
Oeu046121.1 Olea europaea HOM05D004759 ORTHO05D005722 2.1e-15 87.0 65 67.7
PGSC0003DMG400019432 Solanum tuberosum HOM05D006821 ORTHO05D008740 5.4e-11 72.4 238 28.6
unitig_21.g20809 Utricularia gibba HOM05D004759 ORTHO05D005722 7.0e-11 72.0 74 54.1
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 1.0e-09 68.2 224 24.1
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 1.7e-09 67.4 236 24.2
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 3.9e-09 66.2 226 24.8
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 8.6e-09 65.1 236 21.6
AT5G28830 Arabidopsis thaliana HOM05D006821 ORTHO05D008740 1.5e-08 64.3 239 25.5
Cpa.g.sc117.86 Carica papaya HOM05D006821 ORTHO05D008740 1.6e-07 60.8 235 27.2
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 3.1e-06 56.6 235 24.3


User provided reference genes

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