Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 7.8e-163 577.0 281 100.0
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.9e-153 545.8 280 92.5
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 2.5e-153 545.4 280 92.5
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 2.5e-153 545.4 280 92.5
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 6.8e-151 537.3 280 91.1
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 1.2e-150 536.6 280 90.4
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 1.2e-150 536.6 280 90.7
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 4.4e-150 534.6 280 90.7
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.7e-149 532.7 280 90.0
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 1.1e-148 530.0 280 88.9
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 4.3e-145 518.1 271 90.0
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 4.3e-145 518.1 280 86.8
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.2e-144 516.5 280 86.1
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 2.8e-144 515.4 280 86.8
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 3.6e-144 515.0 280 86.8
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 3.6e-144 515.0 280 86.4
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 4.7e-144 514.6 280 85.7
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 6.2e-144 514.2 280 85.4
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 8.1e-144 513.8 279 84.9
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 1.1e-143 513.5 280 85.7
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.8e-143 512.7 280 85.4
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 3.1e-143 511.9 280 85.4
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 3.1e-143 511.9 280 85.7
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 4.0e-143 511.5 280 84.3
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 4.0e-143 511.5 280 84.3
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 5.2e-143 511.1 280 84.6
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 5.2e-143 511.1 280 86.4
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 1.2e-142 510.0 280 85.7
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 1.5e-142 509.6 280 85.0
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 2.6e-142 508.8 280 83.9
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.6e-142 508.8 280 84.6
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 4.4e-142 508.1 280 83.9
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 5.8e-142 507.7 280 85.7
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 9.9e-142 506.9 280 85.7
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 9.9e-142 506.9 280 85.7
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 9.9e-142 506.9 280 84.3
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 1.3e-141 506.5 280 83.6
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.2e-141 505.8 280 85.0
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 2.2e-141 505.8 280 84.6
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.8e-141 505.0 278 86.0
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 6.4e-141 504.2 280 84.6
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 6.4e-141 504.2 280 84.3
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.1e-140 503.4 280 84.6
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 1.4e-140 503.1 280 82.9
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 1.4e-140 503.1 279 84.9
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 1.9e-140 502.7 280 83.6
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 2.4e-140 502.3 280 84.3
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 2.4e-140 502.3 280 84.6
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 3.2e-140 501.9 280 82.9
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 4.2e-140 501.5 280 84.6
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 7.1e-140 500.7 280 84.3
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 7.1e-140 500.7 280 84.3
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 9.3e-140 500.4 280 81.4
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.2e-139 500.0 280 83.6
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.1e-139 499.2 280 83.9
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.7e-139 498.8 280 82.1
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.7e-139 498.8 280 83.2
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 3.5e-139 498.4 280 82.5
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 3.5e-139 498.4 280 83.2
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 3.5e-139 498.4 280 84.3
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 4.6e-139 498.0 280 82.5
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 4.6e-139 498.0 280 82.1
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 7.8e-139 497.3 280 81.8
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 7.8e-139 497.3 280 82.1
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 7.8e-139 497.3 280 83.2
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 5.1e-138 494.6 280 81.8
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 6.6e-138 494.2 280 80.7
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 8.7e-138 493.8 280 82.5
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 8.7e-138 493.8 280 82.1
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 8.7e-138 493.8 280 81.8
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 4.3e-137 491.5 272 84.6
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 5.6e-137 491.1 280 80.7
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 7.3e-137 490.7 279 81.4
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 9.6e-137 490.3 280 81.8
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 9.6e-137 490.3 280 81.1
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.3e-136 490.0 280 81.1
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.6e-136 489.6 276 81.5
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 2.1e-136 489.2 330 72.4
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.8e-136 488.8 280 80.7
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.6e-136 488.4 271 84.5
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 4.8e-136 488.0 280 82.1
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 6.2e-136 487.6 280 80.4
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 6.2e-136 487.6 280 79.6
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 8.1e-136 487.3 271 84.1
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 1.1e-135 486.9 280 80.0
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.4e-135 486.5 271 82.7
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 2.4e-135 485.7 280 80.4
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 3.1e-135 485.3 280 81.1
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 5.3e-135 484.6 280 79.6
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 2.0e-134 482.6 280 79.6
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 2.6e-134 482.3 280 79.3
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 3.4e-134 481.9 280 79.6
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 3.4e-134 481.9 280 78.9
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 3.4e-134 481.9 280 80.0
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 4.5e-134 481.5 280 78.9
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 5.8e-134 481.1 280 78.2
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 5.8e-134 481.1 280 78.2
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 5.8e-134 481.1 280 78.9
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 7.6e-134 480.7 281 80.8
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 9.9e-134 480.3 280 78.9
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 9.9e-134 480.3 280 79.3
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 9.9e-134 480.3 280 78.6
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 1.3e-133 479.9 280 78.9
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 1.7e-133 479.6 280 80.4
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.7e-133 479.6 280 79.6
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 2.2e-133 479.2 280 77.9
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 2.9e-133 478.8 281 80.4
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 2.9e-133 478.8 281 80.4
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 6.4e-133 477.6 278 80.9
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.1e-132 476.9 280 78.9
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.4e-132 475.7 271 81.2
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 5.4e-132 474.6 281 79.7
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.7e-131 472.2 280 80.0
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 3.0e-130 468.8 272 81.6
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 4.8e-128 461.5 344 66.9
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 5.3e-127 458.0 336 66.7
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.5e-126 456.4 273 78.4
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 3.8e-125 451.8 256 84.0
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 7.1e-124 447.6 280 73.9
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 7.6e-118 427.6 270 73.0
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 6.5e-117 424.5 246 81.3
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 4.6e-115 418.3 280 67.9
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 6.0e-115 417.9 280 69.3
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 9.6e-113 410.6 270 72.2
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 2.8e-112 409.1 280 67.9
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 1.4e-111 406.8 280 70.7
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.7e-109 399.8 281 68.3
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 1.4e-98 363.6 240 72.9
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 1.2e-94 350.5 195 82.6
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 1.2e-91 340.5 188 85.6
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 1.5e-89 333.6 285 56.1
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.7e-88 330.1 176 88.1
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 5.2e-82 308.5 179 82.7
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.7e-81 305.1 179 81.0
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 4.8e-80 302.0 167 85.6
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 7.0e-79 298.1 178 80.3
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 1.4e-63 247.3 196 62.8
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 6.6e-61 238.4 291 44.7
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 9.2e-55 218.0 168 64.3
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 5.6e-52 208.8 127 75.6
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.7e-48 197.2 99 90.9
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.4e-42 177.6 301 37.9
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 3.3e-36 156.4 104 75.0
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 7.3e-36 155.2 267 37.5
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 2.8e-35 153.3 74 94.6
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 8.1e-35 151.8 355 31.5
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 4.0e-34 149.4 80 85.0
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 9.9e-33 144.8 288 32.3
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 4.1e-31 139.4 365 28.8
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 3.9e-29 132.9 286 31.5
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 1.2e-27 127.9 67 85.1
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 2.1e-27 127.1 332 30.4
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 4.7e-27 125.9 248 35.5
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 6.2e-27 125.6 137 48.2
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 4.8e-11 72.8 37 89.2
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 8.1e-11 72.0 54 66.7
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.4e-07 61.2 31 87.1


User provided reference genes

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