Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 3.8e-134 481.5 241 100.0
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 3.8e-134 481.5 241 100.0
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 1.7e-129 466.1 241 95.0
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 1.1e-128 463.4 241 94.6
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 2.0e-127 459.1 241 92.9
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 1.2e-124 449.9 241 92.5
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 3.6e-124 448.4 241 91.3
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 2.0e-122 442.6 247 89.9
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 3.0e-115 418.7 241 83.8
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 8.8e-115 417.2 223 91.5
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 8.3e-113 410.6 241 86.3
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 1.4e-112 409.8 240 82.9
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 1.8e-112 409.5 235 83.4
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 2.7e-111 405.6 241 81.7
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 3.5e-111 405.2 240 80.8
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.0e-110 403.7 238 81.1
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 1.7e-110 402.9 241 81.3
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.3e-110 402.5 238 81.1
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 5.0e-110 401.4 241 79.7
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 6.6e-110 401.0 241 80.9
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 1.5e-109 399.8 241 80.1
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 2.5e-109 399.1 241 80.1
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 4.3e-109 398.3 232 83.2
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 4.3e-109 398.3 241 80.5
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 5.6e-109 397.9 222 86.5
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 7.3e-109 397.5 241 79.7
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 7.3e-109 397.5 241 79.3
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 1.2e-108 396.7 253 77.9
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 1.2e-108 396.7 230 83.9
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 1.6e-108 396.4 228 82.9
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 2.1e-108 396.0 241 80.1
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 2.8e-108 395.6 235 80.4
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 2.8e-108 395.6 235 82.1
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 3.6e-108 395.2 241 78.4
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 3.6e-108 395.2 241 80.9
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 4.7e-108 394.8 231 82.7
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 4.7e-108 394.8 230 80.9
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 1.4e-107 393.3 237 78.1
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 1.8e-107 392.9 241 79.3
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 1.8e-107 392.9 232 81.5
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 2.3e-107 392.5 241 78.4
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 2.3e-107 392.5 236 79.7
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 2.3e-107 392.5 235 80.0
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 3.0e-107 392.1 232 79.3
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 4.0e-107 391.7 241 77.6
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 4.0e-107 391.7 241 79.3
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 8.9e-107 390.6 241 77.6
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 8.9e-107 390.6 237 80.2
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 8.9e-107 390.6 241 78.4
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 1.5e-106 389.8 241 78.0
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 1.5e-106 389.8 241 78.0
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 1.5e-106 389.8 241 78.0
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 2.0e-106 389.4 241 78.4
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.0e-106 389.4 241 77.6
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 2.0e-106 389.4 241 77.6
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 2.6e-106 389.0 241 78.0
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 2.6e-106 389.0 237 79.7
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 4.4e-106 388.3 241 77.2
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 9.8e-106 387.1 241 77.2
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 1.7e-105 386.3 243 78.6
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 2.4e-104 382.5 232 78.9
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 3.2e-104 382.1 241 75.1
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 3.2e-104 382.1 233 79.8
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 4.1e-104 381.7 237 80.2
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 1.2e-103 380.2 265 72.8
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 1.2e-103 380.2 249 75.9
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 2.7e-103 379.0 233 79.0
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 2.7e-103 379.0 241 75.1
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 1.7e-102 376.3 224 81.2
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.5e-101 373.2 238 74.8
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 3.3e-101 372.1 264 70.8
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 7.3e-101 370.9 243 73.3
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 1.6e-100 369.8 241 75.9
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 6.2e-100 367.9 241 75.1
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 3.1e-99 365.5 229 74.7
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 3.4e-98 362.1 240 70.8
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 3.4e-98 362.1 261 69.0
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 4.9e-97 358.2 209 82.3
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 1.4e-96 356.7 231 72.3
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 3.2e-96 355.5 282 65.2
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 5.4e-96 354.8 235 74.9
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 7.0e-96 354.4 228 73.7
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 9.2e-96 354.0 228 73.2
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 1.2e-95 353.6 241 73.0
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 1.6e-95 353.2 238 73.5
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.0e-95 352.8 228 73.2
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 6.6e-94 347.8 210 81.4
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 4.7e-92 341.7 250 67.2
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.5e-90 336.7 259 64.5
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 1.0e-86 323.9 195 80.0
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 4.7e-84 315.1 232 68.1
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 4.0e-83 312.0 239 64.0
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 4.4e-82 308.5 237 67.1
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 4.9e-81 305.1 195 79.0
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 1.4e-80 303.5 266 61.7
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 1.9e-80 303.1 226 64.2
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 4.6e-79 298.5 306 53.3
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 1.3e-78 297.0 211 69.7
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 8.6e-78 294.3 191 73.8
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 1.6e-76 290.0 177 79.7
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 2.6e-74 282.7 231 66.2
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.7e-71 272.7 194 71.1
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 3.5e-71 272.3 230 57.0
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 3.3e-69 265.8 184 73.9
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 3.3e-69 265.8 184 73.9
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 3.6e-68 262.3 192 71.4
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 2.9e-65 252.7 220 53.6
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 5.4e-64 248.4 225 53.8
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 1.3e-62 243.8 149 74.5
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 5.6e-61 238.4 194 64.9
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 7.6e-58 228.0 221 51.1
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 8.4e-57 224.6 123 92.7
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 3.0e-46 189.5 165 62.4
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 3.4e-42 176.0 128 66.4
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 7.4e-37 158.3 118 68.6
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.9e-33 146.4 93 78.5
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 6.5e-33 145.2 92 77.2
Solyc11g013410.2 Solanum lycopersicum HOM05D006316 ORTHO05D008032 6.9e-27 125.2 90 68.9
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 7.7e-26 121.7 69 85.5
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 6.5e-25 118.6 71 74.6
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 1.4e-22 110.9 55 87.3
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 1.3e-20 104.4 115 54.8
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 2.1e-15 87.0 65 72.3
Cfa025220 Carpinus fangiana HOM05D006316 ORTHO05D008032 8.0e-15 85.1 153 35.3
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 1.2e-10 71.2 65 55.4


User provided reference genes

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