Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZL1FCV Arachis hypogaea HOM05D001464 ORTHO05D002836 3.9e-20 100.5 51 100.0
arahy.Tifrunner.gnm1.ann1.DS6UFT Arachis hypogaea HOM05D001464 ORTHO05D002836 4.2e-14 80.5 43 97.7
arahy.Tifrunner.gnm1.ann1.JRGB4J Arachis hypogaea HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
arahy.Tifrunner.gnm1.ann1.XFL0DY Arachis hypogaea HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Cpa.g.sc258.11 Carica papaya HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Glyma.01G032600 Glycine max HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Glyma.02G032700 Glycine max HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Gohir.A03G141300 Gossypium hirsutum HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Gohir.D02G164200 Gossypium hirsutum HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Lj2g0010221 Lotus japonicus HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Lalb_Chr05g0217071 Lupinus albus HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Lalb_Chr16g0382411 Lupinus albus HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
MD13G1088900 Malus domestica HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Manes.01G198000 Manihot esculenta HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Medtr5g034840 Medicago truncatula HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Phvul.002G072900 Phaseolus vulgaris HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Potri.010G096400 Populus trichocarpa HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
Sabra10G0068900 Salix brachista HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
TPR.G4430 Trifolium pratense HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
VMungo1215G0073 Vigna mungo HOM05D001464 ORTHO05D002836 8.7e-12 72.8 39 94.9
CAN.G205.15 Capsicum annuum HOM05D001464 ORTHO05D002836 1.1e-11 72.4 39 92.3
Ca_04613_v3 Cicer arietinum L. HOM05D001464 ORTHO05D002836 1.1e-11 72.4 39 92.3
Manes.05G089000 Manihot esculenta HOM05D001464 ORTHO05D002836 1.1e-11 72.4 39 92.3
Nitab4.5_0000052g0280 Nicotiana tabacum HOM05D001464 ORTHO05D002836 1.1e-11 72.4 39 92.3
Nitab4.5_0002198g0030 Nicotiana tabacum HOM05D001464 ORTHO05D002836 1.1e-11 72.4 39 92.3
Solyc05g005810.4 Solanum lycopersicum HOM05D001464 ORTHO05D002836 1.1e-11 72.4 39 92.3
Sopen05g001820 Solanum pennellii HOM05D001464 ORTHO05D002836 1.1e-11 72.4 39 92.3
PGSC0003DMG400004129 Solanum tuberosum HOM05D001464 ORTHO05D002836 1.1e-11 72.4 39 92.3
Peaxi162Scf00421g00027 Petunia axillaris HOM05D001464 ORTHO05D002836 1.5e-11 72.0 39 89.7
THA.LOC104816749 Tarenaya hassleriana HOM05D001464 ORTHO05D002836 1.5e-11 72.0 39 92.3
Cfa009118 Carpinus fangiana HOM05D001464 ORTHO05D002836 1.9e-11 71.6 39 94.9
MSTRG.607 Avicennia marina HOM05D001464 ORTHO05D002836 2.5e-11 71.2 39 89.7
Dinv31014 Davidia involucrata HOM05D001464 ORTHO05D002836 2.5e-11 71.2 39 89.7
Dinv31088 Davidia involucrata HOM05D001464 ORTHO05D002836 2.5e-11 71.2 39 89.7
Nn3g16940 Nelumbo nucifera HOM05D001464 ORTHO05D002836 2.5e-11 71.2 39 92.3
Hund25331 Selenicereus undatus HOM05D001464 ORTHO05D002836 2.5e-11 71.2 39 89.7
TAR622G0690 Trochodendron aralioides HOM05D001464 ORTHO05D002836 2.5e-11 71.2 39 89.7
CSS0031711 Camellia sinensis var. sinensis HOM05D001464 ORTHO05D002836 3.3e-11 70.9 39 92.3
CiPaw.06G073100 Carya illinoinensis HOM05D001464 ORTHO05D002836 3.3e-11 70.9 39 94.9
Hma1.2p1_1017F.1_g248320 Hydrangea macrophylla HOM05D001464 ORTHO05D002836 3.3e-11 70.9 39 87.2
MD16G1089000 Malus domestica HOM05D001464 ORTHO05D002836 3.3e-11 70.9 39 89.7
Prupe.1G256900 Prunus persica HOM05D001464 ORTHO05D002836 3.3e-11 70.9 39 92.3
GSVIVG01020205001 Vitis vinifera HOM05D001464 ORTHO05D002836 3.3e-11 70.9 39 89.7
Cc11_g14410 Coffea canephora HOM05D001464 ORTHO05D002836 4.3e-11 70.5 39 87.2
ECA233G5992 Erigeron canadensis HOM05D001464 ORTHO05D002836 4.3e-11 70.5 39 89.7
QL03p061967 Quercus lobata HOM05D001464 ORTHO05D002836 4.3e-11 70.5 39 92.3
SGA_v2.0_scaffold165G38267 Striga asiatica HOM05D001464 ORTHO05D002836 4.3e-11 70.5 39 89.7
Atru.chr11.1992 Acer truncatum HOM05D001464 ORTHO05D002836 5.6e-11 70.1 39 92.3
Lsat_1_v5_gn_8_157561 Lactuca sativa HOM05D001464 ORTHO05D002836 5.6e-11 70.1 39 87.2
Thecc.02G246600 Theobroma cacao HOM05D001464 ORTHO05D002836 5.6e-11 70.1 39 92.3
Actinidia27774 Actinidia chinensis HOM05D001464 ORTHO05D002836 7.3e-11 69.7 39 89.7
CSS0009867 Camellia sinensis var. sinensis HOM05D001464 ORTHO05D002836 7.3e-11 69.7 39 89.7
CANSAT01G3002 Cannabis sativa HOM05D001464 ORTHO05D002836 7.3e-11 69.7 39 92.3
Ciclev10031899m.g Citrus clementina HOM05D001464 ORTHO05D002836 7.3e-11 69.7 39 89.7
Dinv24887 Davidia involucrata HOM05D001464 ORTHO05D002836 7.3e-11 69.7 39 89.7
Nn4g22853 Nelumbo nucifera HOM05D001464 ORTHO05D002836 7.3e-11 69.7 39 87.2
PGR119G1860 Punica granatum HOM05D001464 ORTHO05D002836 7.3e-11 69.7 39 87.2
SalBow2G1020 Salvia bowleyana HOM05D001464 ORTHO05D002836 7.3e-11 69.7 39 87.2
unitig_8.g3171 Utricularia gibba HOM05D001464 ORTHO05D002836 7.3e-11 69.7 39 84.6
Duzib248G0333 Durio zibethinus HOM05D001464 ORTHO05D002836 9.6e-11 69.3 39 89.7
Duzib251G0903 Durio zibethinus HOM05D001464 ORTHO05D002836 9.6e-11 69.3 39 89.7
HanXRQChr08g0208861 Helianthus annuus HOM05D001464 ORTHO05D002836 1.3e-10 68.9 39 87.2
TWI75G0695 Tripterygium wilfordii HOM05D001464 ORTHO05D002836 1.3e-10 68.9 39 87.2
AL2G16630 Arabidopsis lyrata HOM05D001464 ORTHO05D002836 1.6e-10 68.6 39 87.2
AT1G60060 Arabidopsis thaliana HOM05D001464 ORTHO05D002836 1.6e-10 68.6 39 87.2
BcaB07g31200 Brassica carinata HOM05D001464 ORTHO05D002836 1.6e-10 68.6 39 87.2
BcaC04g22216 Brassica carinata HOM05D001464 ORTHO05D002836 1.6e-10 68.6 39 87.2
A09p17700 Brassica napus HOM05D001464 ORTHO05D002836 1.6e-10 68.6 39 87.2
BNapus_Darmor_BZH_scaffold_155p00050 Brassica napus HOM05D001464 ORTHO05D002836 1.6e-10 68.6 39 87.2
BolC9t55110H Brassica oleracea HOM05D001464 ORTHO05D002836 1.6e-10 68.6 39 87.2
BraA09t37398Z Brassica rapa HOM05D001464 ORTHO05D002836 1.6e-10 68.6 39 87.2
Carub.0002s0519 Capsella rubella HOM05D001464 ORTHO05D002836 1.6e-10 68.6 39 87.2
Eucgr.B03947 Eucalyptus grandis HOM05D001464 ORTHO05D002836 1.6e-10 68.6 39 87.2
Thhalv10023517m.g Eutrema salsugineum HOM05D001464 ORTHO05D002836 1.6e-10 68.6 39 87.2
Sp2g04540 Schrenkiella parvula HOM05D001464 ORTHO05D002836 1.6e-10 68.6 39 87.2
EL10Ac6g13639 Beta vulgaris HOM05D001464 ORTHO05D002836 2.1e-10 68.2 39 84.6
CiPaw.05G148000 Carya illinoinensis HOM05D001464 ORTHO05D002836 2.1e-10 68.2 39 89.7
Lsat_1_v5_gn_4_7141 Lactuca sativa HOM05D001464 ORTHO05D002836 2.1e-10 68.2 39 84.6
Sc04g0008990 Simmondsia chinensis HOM05D001464 ORTHO05D002836 2.1e-10 68.2 39 84.6
Actinidia32591 Actinidia chinensis HOM05D001464 ORTHO05D002836 2.8e-10 67.8 39 87.2
FvH4_4g34860 Fragaria vesca HOM05D001464 ORTHO05D002836 2.8e-10 67.8 39 89.7
FAN07G2436 Fragaria x ananassa HOM05D001464 ORTHO05D002836 2.8e-10 67.8 39 89.7
FAN12G1037 Fragaria x ananassa HOM05D001464 ORTHO05D002836 2.8e-10 67.8 39 89.7
FAN17G2701 Fragaria x ananassa HOM05D001464 ORTHO05D002836 2.8e-10 67.8 39 89.7
RcHm_v2.0_Chr4g0444251 Rosa chinensis HOM05D001464 ORTHO05D002836 2.8e-10 67.8 39 89.7
Aa31LG2G10180 Aethionema arabicum HOM05D001464 ORTHO05D002836 3.6e-10 67.4 39 87.2
AUR62005336 Chenopodium quinoa HOM05D001464 ORTHO05D002836 3.6e-10 67.4 40 80.0
DCAR_024136 Daucus carota HOM05D001464 ORTHO05D002836 3.6e-10 67.4 39 87.2
Migut.L01435 Erythranthe guttata HOM05D001464 ORTHO05D002836 3.6e-10 67.4 39 87.2
CARHR052890 Cardamine hirsuta HOM05D001464 ORTHO05D002836 4.8e-10 67.0 39 84.6
AUR62013988 Chenopodium quinoa HOM05D001464 ORTHO05D002836 4.8e-10 67.0 39 84.6
SalBow2G1597 Salvia bowleyana HOM05D001464 ORTHO05D002836 4.8e-10 67.0 39 84.6
ECA234G1389 Erigeron canadensis HOM05D001464 ORTHO05D002836 8.1e-10 66.2 39 76.9
FAN22G0058 Fragaria x ananassa HOM05D001464 ORTHO05D002836 8.1e-10 66.2 39 89.7
Ah.02g129740 Amaranthus hybridus HOM05D001464 ORTHO05D002836 1.4e-09 65.5 39 84.6
Glyma.08G289500 Glycine max HOM05D001464 ORTHO05D002836 1.4e-09 65.5 39 82.1
Aqoxy3G00949 Aquilegia oxysepala HOM05D001464 ORTHO05D002836 1.8e-09 65.1 39 79.5
PSO063G2642 Papaver somniferum HOM05D001464 ORTHO05D002836 1.8e-09 65.1 39 79.5
PSO832G1990 Papaver somniferum HOM05D001464 ORTHO05D002836 1.8e-09 65.1 39 79.5
THA.LOC104819471 Tarenaya hassleriana HOM05D001464 ORTHO05D002836 1.8e-09 65.1 39 82.1
HPP92_018293 Vanilla planifolia HOM05D001464 ORTHO05D002836 1.8e-09 65.1 39 84.6
Aqoxy3G03050 Aquilegia oxysepala HOM05D001464 ORTHO05D002836 3.1e-09 64.3 39 79.5
BcaB04g20248 Brassica carinata HOM05D001464 ORTHO05D002836 4.0e-09 63.9 39 82.1
ATR1149G003 Amborella trichopoda HOM05D001464 ORTHO05D002836 5.3e-09 63.5 41 78.0
BcaC09g49437 Brassica carinata HOM05D001464 ORTHO05D002836 5.3e-09 63.5 39 79.5
A01p29040 Brassica napus HOM05D001464 ORTHO05D002836 5.3e-09 63.5 39 79.5
C01p36760 Brassica napus HOM05D001464 ORTHO05D002836 5.3e-09 63.5 39 79.5
BolC1t03635H Brassica oleracea HOM05D001464 ORTHO05D002836 5.3e-09 63.5 39 79.5
BraA01t02992Z Brassica rapa HOM05D001464 ORTHO05D002836 5.3e-09 63.5 39 79.5
HanXRQChr12g0383401 Helianthus annuus HOM05D001464 ORTHO05D002836 6.9e-09 63.2 39 76.9
HanXRQChr17g0570241 Helianthus annuus HOM05D001464 ORTHO05D002836 6.9e-09 63.2 39 79.5
Sed0005883 Sechium edule HOM05D001464 ORTHO05D002836 6.9e-09 63.2 39 76.9
COL.COLO4_19528 Corchorus olitorius HOM05D001464 ORTHO05D002836 9.0e-09 62.8 39 87.2
Gorai.005G184200 Gossypium raimondii HOM05D001464 ORTHO05D002836 9.0e-09 62.8 54 68.5
TAR371G1038 Trochodendron aralioides HOM05D001464 ORTHO05D002836 9.0e-09 62.8 39 76.9
Sed0018762 Sechium edule HOM05D001464 ORTHO05D002836 1.5e-08 62.0 39 76.9
Zm00001eb254280 Zea mays HOM05D001464 ORTHO05D002836 1.5e-08 62.0 39 79.5
CDE04G2883 Ceratophyllum demersum HOM05D001464 ORTHO05D002836 2.0e-08 61.6 41 73.2
CDE07G0583 Ceratophyllum demersum HOM05D001464 ORTHO05D002836 2.6e-08 61.2 41 73.2
Os06g0233800 Oryza sativa ssp. japonica HOM05D001464 ORTHO05D002836 2.6e-08 61.2 41 75.6
Os02g0742700 Oryza sativa ssp. japonica HOM05D001464 ORTHO05D002836 3.4e-08 60.8 39 79.5
PSO017G3926 Papaver somniferum HOM05D001464 ORTHO05D002836 4.4e-08 60.5 39 69.2
PSO478G1608 Papaver somniferum HOM05D001464 ORTHO05D002836 4.4e-08 60.5 39 69.2
SalBow8G1514 Salvia bowleyana HOM05D001464 ORTHO05D002836 5.8e-08 60.1 40 72.5
vmacro01192 Vaccinium macrocarpon HOM05D001464 ORTHO05D002836 5.8e-08 60.1 39 76.9
vmacro22611 Vaccinium macrocarpon HOM05D001464 ORTHO05D002836 5.8e-08 60.1 39 76.9
SEGI_17554 Sequoiadendron giganteum HOM05D001464 ORTHO05D002836 9.9e-08 59.3 41 56.1
SEGI_30140 Sequoiadendron giganteum HOM05D001464 ORTHO05D002836 9.9e-08 59.3 41 56.1
Actinidia15025 Actinidia chinensis HOM05D001464 ORTHO05D002836 2.2e-07 58.2 66 56.1
ATR0580G446 Amborella trichopoda HOM05D001464 ORTHO05D002836 2.9e-07 57.8 41 63.4
ClCG05G025150 Citrullus lanatus HOM05D001464 ORTHO05D002836 2.9e-07 57.8 39 76.9
MELO3C012014.2 Cucumis melo HOM05D001464 ORTHO05D002836 4.9e-07 57.0 39 74.4
CsaV3_5G031750 Cucumis sativus L. HOM05D001464 ORTHO05D002836 4.9e-07 57.0 39 74.4
TWI56G0457 Tripterygium wilfordii HOM05D001464 ORTHO05D002836 8.4e-07 56.2 41 56.1
Peaxi162Scf01087g00126 Petunia axillaris HOM05D001464 ORTHO05D002836 1.4e-06 55.5 41 56.1
Mapoly0123s0025 Marchantia polymorpha HOM05D001464 ORTHO05D002836 1.9e-06 55.1 41 53.7
PGR031G1567 Punica granatum HOM05D001464 ORTHO05D002836 3.2e-06 54.3 41 56.1
HPP92_016978 Vanilla planifolia HOM05D001464 ORTHO05D002836 4.2e-06 53.9 39 66.7
Actinidia22655 Actinidia chinensis HOM05D001464 ORTHO05D002836 5.4e-06 53.5 41 53.7
CSS0003344 Camellia sinensis var. sinensis HOM05D001464 ORTHO05D002836 7.1e-06 53.1 41 53.7
Glyma.17G238900 Glycine max HOM05D001464 ORTHO05D002836 7.1e-06 53.1 41 58.5
Hma1.2p1_0634F.1_g193015 Hydrangea macrophylla HOM05D001464 ORTHO05D002836 7.1e-06 53.1 41 48.8
Hma1.2p1_0634F.1_g193030 Hydrangea macrophylla HOM05D001464 ORTHO05D002836 7.1e-06 53.1 41 48.8
Dinv39273 Davidia involucrata HOM05D001464 ORTHO05D002836 9.3e-06 52.8 41 53.7
Manes.05G177000 Manihot esculenta HOM05D001464 ORTHO05D002836 9.3e-06 52.8 41 53.7
Potri.014G024000 Populus trichocarpa HOM05D001464 ORTHO05D002836 9.3e-06 52.8 41 53.7


User provided reference genes

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