Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 1.8e-263 912.1 494 100.0
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 2.8e-168 595.9 308 99.7
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 2.9e-160 569.3 341 87.1
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.8e-159 566.6 341 86.2
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 3.2e-159 565.8 340 85.3
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 9.2e-159 564.3 340 84.7
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 6.6e-157 558.1 330 88.5
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 1.9e-156 556.6 340 85.9
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 9.5e-156 554.3 330 86.4
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 3.6e-155 552.4 340 83.8
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 3.6e-155 552.4 339 83.8
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 5.2e-154 548.5 334 85.6
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 3.4e-153 545.8 345 83.2
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 7.0e-151 538.1 353 81.0
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 9.9e-145 517.7 305 84.6
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 7.1e-143 511.5 330 80.0
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.6e-142 510.4 329 79.0
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 2.7e-142 509.6 305 83.3
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 4.6e-142 508.8 318 82.7
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 7.8e-142 508.1 309 83.2
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 1.5e-140 503.8 304 84.9
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 4.3e-140 502.3 300 85.7
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 4.3e-140 502.3 304 84.9
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 9.5e-140 501.1 335 77.6
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 4.7e-139 498.8 329 79.3
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 4.7e-139 498.8 289 87.9
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 1.1e-138 497.7 330 77.6
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 1.1e-138 497.7 310 81.9
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 2.4e-138 496.5 327 78.3
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 3.1e-138 496.1 339 77.0
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 5.2e-138 495.4 318 79.2
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 8.9e-138 494.6 341 76.2
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 8.9e-138 494.6 310 80.6
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.5e-137 493.8 341 76.0
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 1.5e-137 493.8 337 76.3
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 3.4e-137 492.7 297 83.5
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 7.6e-137 491.5 327 79.5
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 1.7e-136 490.3 318 78.9
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 2.2e-136 490.0 305 81.0
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 4.9e-136 488.8 320 80.0
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.2e-134 484.2 305 80.7
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.6e-134 483.8 303 82.8
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 3.5e-134 482.6 305 80.3
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 6.0e-134 481.9 312 79.8
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 1.7e-133 480.3 298 80.5
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.7e-133 480.3 303 82.8
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 8.7e-133 478.0 317 77.0
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 1.9e-132 476.9 340 73.8
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 2.5e-132 476.5 312 78.5
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 2.5e-132 476.5 309 80.9
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 2.5e-132 476.5 308 80.2
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 2.5e-132 476.5 310 79.4
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 5.6e-132 475.3 301 78.4
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.2e-131 474.2 304 79.6
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 8.1e-131 471.5 307 80.8
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 1.4e-130 470.7 305 77.4
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 1.4e-130 470.7 292 83.2
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 6.9e-130 468.4 297 77.8
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 1.2e-129 467.6 301 81.4
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 2.6e-129 466.5 326 74.2
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 3.4e-129 466.1 341 72.7
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 1.3e-128 464.2 298 77.5
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 1.7e-128 463.8 298 78.2
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 2.9e-128 463.0 311 75.9
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 1.4e-127 460.7 298 77.2
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 1.4e-127 460.7 299 77.6
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 1.4e-127 460.7 298 77.2
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 3.2e-127 459.5 301 81.1
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 3.2e-127 459.5 298 76.8
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 5.4e-127 458.8 303 76.2
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 5.4e-127 458.8 303 76.2
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 5.4e-127 458.8 331 71.9
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 9.3e-127 458.0 309 75.7
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 1.2e-126 457.6 298 77.2
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 2.7e-126 456.4 306 76.8
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 2.7e-126 456.4 317 75.7
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 4.6e-126 455.7 283 83.4
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 4.6e-126 455.7 311 76.8
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 7.8e-126 454.9 303 75.9
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 1.0e-125 454.5 316 75.3
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 3.3e-124 449.5 299 78.3
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 4.3e-124 449.1 300 77.0
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 6.9e-122 441.8 321 72.9
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 6.9e-122 441.8 327 70.3
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 3.4e-121 439.5 296 77.7
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 4.5e-121 439.1 340 72.1
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 4.5e-121 439.1 306 74.8
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.3e-120 437.6 304 77.3
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 1.7e-120 437.2 325 69.8
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 1.7e-120 437.2 314 72.3
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 1.1e-119 434.5 328 68.3
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 1.1e-119 434.5 326 69.3
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 2.4e-119 433.3 242 93.4
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 7.1e-119 431.8 300 73.7
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 7.1e-119 431.8 303 74.9
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 1.3e-117 427.6 331 67.7
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 1.8e-117 427.2 336 67.9
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 6.7e-117 425.2 326 69.3
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 8.7e-117 424.9 326 69.3
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 1.9e-116 423.7 326 69.0
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 3.3e-116 422.9 326 68.7
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 7.4e-116 421.8 297 75.4
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 2.1e-115 420.2 298 71.8
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.1e-115 420.2 326 69.3
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 2.1e-115 420.2 297 75.1
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 1.4e-114 417.5 306 71.9
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 3.8e-112 409.5 316 68.4
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 1.1e-111 407.9 286 72.7
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 1.1e-111 407.9 260 78.8
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 6.7e-109 398.7 300 69.7
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 1.3e-107 394.4 258 77.9
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 3.7e-107 392.9 337 64.1
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 4.8e-107 392.5 366 59.3
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 8.2e-107 391.7 321 66.7
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 1.1e-106 391.3 257 78.2
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 5.8e-105 385.6 326 65.0
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 1.7e-104 384.0 296 66.9
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 1.0e-101 374.8 303 65.3
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 2.0e-97 360.5 245 75.5
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 3.1e-90 336.7 302 64.2
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 9.1e-90 335.1 252 65.9
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 1.1e-87 328.2 256 64.5
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 2.2e-83 313.9 177 93.8
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 2.6e-76 290.4 275 56.7
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 1.1e-74 285.0 356 52.5
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.2e-70 271.6 191 77.0
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 7.5e-68 262.3 212 67.5
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 2.3e-53 214.2 157 70.7
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 4.0e-45 186.8 103 91.3
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 1.2e-44 185.3 120 73.3
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 3.4e-36 157.1 103 79.6
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 3.4e-36 157.1 103 79.6
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 2.8e-30 137.5 103 65.0
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 1.8e-21 108.2 200 40.5
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 5.2e-21 106.7 63 81.0
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 4.4e-20 103.6 211 30.8
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 3.4e-12 77.4 43 81.4


User provided reference genes

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