Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YA13V2 Arachis hypogaea HOM05D001611 ORTHO05D001464 1.2e-55 219.5 107 100.0
arahy.Tifrunner.gnm1.ann1.E8Y1RF Arachis hypogaea HOM05D001611 ORTHO05D001464 1.6e-28 129.4 92 76.1
VMungo0720G1570 Vigna mungo HOM05D001611 ORTHO05D001464 1.8e-22 109.4 93 60.2
Phvul.007G256900 Phaseolus vulgaris HOM05D001611 ORTHO05D001464 3.9e-22 108.2 93 59.1
Lj5g0003236 Lotus japonicus HOM05D001611 ORTHO05D001464 6.7e-22 107.5 91 59.3
Medtr0311s0030 Medicago truncatula HOM05D001611 ORTHO05D001464 6.7e-22 107.5 92 57.6
Glyma.02G175400 Glycine max HOM05D001611 ORTHO05D001464 1.1e-21 106.7 91 58.2
Glyma.10G093400 Glycine max HOM05D001611 ORTHO05D001464 1.1e-21 106.7 91 59.3
Phvul.001G138400 Phaseolus vulgaris HOM05D001611 ORTHO05D001464 2.5e-21 105.5 91 58.2
TPR.G25629 Trifolium pratense HOM05D001611 ORTHO05D001464 2.5e-21 105.5 92 56.5
Psat6g072480 Pisum sativum HOM05D001611 ORTHO05D001464 3.3e-21 105.1 91 59.3
Glyma.19G144000 Glycine max HOM05D001611 ORTHO05D001464 9.6e-21 103.6 91 57.1
TPR.G4708 Trifolium pratense HOM05D001611 ORTHO05D001464 9.6e-21 103.6 93 60.2
Medtr7g092530 Medicago truncatula HOM05D001611 ORTHO05D001464 2.8e-20 102.1 91 60.4
Glyma.03G141500 Glycine max HOM05D001611 ORTHO05D001464 1.1e-19 100.1 91 56.0
arahy.Tifrunner.gnm1.ann1.NTM09G Arachis hypogaea HOM05D001611 ORTHO05D001464 2.6e-18 95.5 91 52.7
Lalb_Chr25g0287561 Lupinus albus HOM05D001611 ORTHO05D001464 7.6e-18 94.0 91 53.8
arahy.Tifrunner.gnm1.ann1.8UK8SV Arachis hypogaea HOM05D001611 ORTHO05D001464 1.3e-17 93.2 91 51.6
arahy.Tifrunner.gnm1.ann1.AK4DPW Arachis hypogaea HOM05D001611 ORTHO05D001464 3.8e-17 91.7 50 84.0
Psat3g070360 Pisum sativum HOM05D001611 ORTHO05D001464 4.9e-17 91.3 91 54.9
arahy.Tifrunner.gnm1.ann1.S5H1L3 Arachis hypogaea HOM05D008068 ORTHO05D001464 6.4e-17 90.9 75 69.3
Thecc.05G165500 Theobroma cacao HOM05D001611 ORTHO05D001464 4.2e-16 88.2 91 56.0
CANSAT80G2271 Cannabis sativa HOM05D001611 ORTHO05D001464 3.0e-14 82.0 92 48.9
CANSAT80G2415 Cannabis sativa HOM05D001611 ORTHO05D001464 3.0e-14 82.0 92 48.9
Atru.chr1.944 Acer truncatum HOM05D001611 ORTHO05D001464 6.7e-14 80.9 102 52.0
Gohir.A09G125200 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.9e-13 79.3 91 49.5
Gohir.D09G122200 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.9e-13 79.3 91 49.5
Gorai.006G140000 Gossypium raimondii HOM05D001611 ORTHO05D001464 5.6e-13 77.8 91 48.4
Duzib093G2166 Durio zibethinus HOM05D001611 ORTHO05D001464 7.4e-13 77.4 91 48.4
FAN02G0701 Fragaria x ananassa HOM05D001611 ORTHO05D001464 1.6e-12 76.3 90 48.9
Prupe.7G070300 Prunus persica HOM05D001611 ORTHO05D001464 2.8e-12 75.5 90 44.4
CiPaw.10G029400 Carya illinoinensis HOM05D001611 ORTHO05D001464 6.2e-12 74.3 88 50.0
Rhsim04G0099200 Rhododendron simsii HOM05D001611 ORTHO05D001464 6.2e-12 74.3 92 48.9
Actinidia17251 Actinidia chinensis HOM05D001611 ORTHO05D001464 1.1e-11 73.6 92 46.7
Ciclev10006138m.g Citrus clementina HOM05D001611 ORTHO05D001464 1.1e-11 73.6 94 50.0
FvH4_6g22920 Fragaria vesca HOM05D001611 ORTHO05D001464 1.4e-11 73.2 90 47.8
FAN05G2730 Fragaria x ananassa HOM05D001611 ORTHO05D001464 1.4e-11 73.2 90 47.8
FAN09G3015 Fragaria x ananassa HOM05D001611 ORTHO05D001464 1.4e-11 73.2 90 47.8
FAN14G0736 Fragaria x ananassa HOM05D001611 ORTHO05D001464 1.4e-11 73.2 90 47.8
ClCG04G000520 Citrullus lanatus HOM05D001611 ORTHO05D001464 1.8e-11 72.8 91 42.9
CsaV3_4G031560 Cucumis sativus L. HOM05D001611 ORTHO05D001464 1.8e-11 72.8 91 44.0
Sed0012862 Sechium edule HOM05D001611 ORTHO05D001464 1.8e-11 72.8 91 44.0
vmacro09096 Vaccinium macrocarpon HOM05D001611 ORTHO05D001464 2.4e-11 72.4 92 47.8
Cpa.g.sc85.119 Carica papaya HOM05D001611 ORTHO05D001464 3.1e-11 72.0 92 45.7
RcHm_v2.0_Chr3g0480731 Rosa chinensis HOM05D001611 ORTHO05D001464 3.1e-11 72.0 90 46.7
GSVIVG01033351001 Vitis vinifera HOM05D001611 ORTHO05D001464 3.1e-11 72.0 92 43.5
Sed0007317 Sechium edule HOM05D001611 ORTHO05D001464 4.0e-11 71.6 91 42.9
CARHR086760 Cardamine hirsuta HOM05D001611 ORTHO05D001464 5.3e-11 71.2 92 45.7
Haze_19926 Corylus avellana HOM05D001611 ORTHO05D001464 5.3e-11 71.2 87 47.1
Sp3g10420 Schrenkiella parvula HOM05D001611 ORTHO05D001464 1.2e-10 70.1 92 44.6
MBI01_g36429_MAGBIO Magnolia biondii HOM05D001611 ORTHO05D001464 1.5e-10 69.7 93 43.0
QL07p022315 Quercus lobata HOM05D001611 ORTHO05D001464 1.5e-10 69.7 91 44.0
QL93p1910_0004 Quercus lobata HOM05D001611 ORTHO05D001464 1.5e-10 69.7 91 44.0
SalBow1G6798 Salvia bowleyana HOM05D001611 ORTHO05D001464 2.0e-10 69.3 91 42.9
SalBow1G7576 Salvia bowleyana HOM05D001611 ORTHO05D001464 2.0e-10 69.3 91 42.9
MD12G1063300 Malus domestica HOM05D001611 ORTHO05D001464 2.6e-10 68.9 92 42.4
BcaC05g29274 Brassica carinata HOM05D001611 ORTHO05D001464 3.4e-10 68.6 92 42.4
BolC5t34224H Brassica oleracea HOM05D001611 ORTHO05D001464 3.4e-10 68.6 92 42.4
Dinv18103 Davidia involucrata HOM05D001611 ORTHO05D001464 3.4e-10 68.6 91 45.1
Dinv24112 Davidia involucrata HOM05D001611 ORTHO05D001464 3.4e-10 68.6 91 45.1
ECA236G0731 Erigeron canadensis HOM05D001611 ORTHO05D001464 3.4e-10 68.6 91 42.9
BraA05t22510Z Brassica rapa HOM05D001611 ORTHO05D001464 4.5e-10 68.2 92 42.4
Eucgr.A02414 Eucalyptus grandis HOM05D001611 ORTHO05D001464 5.8e-10 67.8 92 44.6
Thhalv10021709m.g Eutrema salsugineum HOM05D001611 ORTHO05D001464 5.8e-10 67.8 92 44.6
CSS0037389 Camellia sinensis var. sinensis HOM05D001611 ORTHO05D001464 7.6e-10 67.4 91 42.9
PGR004G1477 Punica granatum HOM05D001611 ORTHO05D001464 1.3e-09 66.6 78 44.9
Carub.0003s1155 Capsella rubella HOM05D001611 ORTHO05D001464 1.7e-09 66.2 92 42.4
COL.COLO4_28735 Corchorus olitorius HOM05D001611 ORTHO05D001464 1.7e-09 66.2 75 46.7
HanXRQChr06g0176351 Helianthus annuus HOM05D001611 ORTHO05D001464 1.7e-09 66.2 96 38.5
Sc25g0005190 Simmondsia chinensis HOM05D001611 ORTHO05D001464 2.9e-09 65.5 68 45.6
Lsat_1_v5_gn_8_79420 Lactuca sativa HOM05D001611 ORTHO05D001464 3.8e-09 65.1 96 39.6
MD14G1064100 Malus domestica HOM05D001611 ORTHO05D001464 3.8e-09 65.1 90 42.2
Pp3c7_11500 Physcomitrium patens HOM05D001611 ORTHO05D001464 3.8e-09 65.1 91 42.9
Aa31LG3G6400 Aethionema arabicum HOM05D001611 ORTHO05D001464 4.9e-09 64.7 92 42.4
Hma1.2p1_0856F.1_g229070 Hydrangea macrophylla HOM05D001611 ORTHO05D001464 4.9e-09 64.7 91 38.5
PSO339G2796 Papaver somniferum HOM05D001611 ORTHO05D001464 4.9e-09 64.7 91 40.7
SEGI_34594 Sequoiadendron giganteum HOM05D001611 ORTHO05D001464 4.9e-09 64.7 59 55.9
THA.LOC104809920 Tarenaya hassleriana HOM05D001611 ORTHO05D001464 4.9e-09 64.7 92 39.1
BolC1t05257H Brassica oleracea HOM05D001611 ORTHO05D001464 8.4e-09 63.9 92 40.2
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 1.1e-08 63.5 77 45.5
HanXRQChr02g0046231 Helianthus annuus HOM05D001611 ORTHO05D001464 1.1e-08 63.5 52 50.0
AL3G23860 Arabidopsis lyrata HOM05D001611 ORTHO05D001464 1.4e-08 63.2 92 39.1
AT3G12180 Arabidopsis thaliana HOM05D001611 ORTHO05D001464 1.4e-08 63.2 92 40.2
Potri.006G057300 Populus trichocarpa HOM05D001611 ORTHO05D001464 1.9e-08 62.8 88 40.9
Sabra06G0040400 Salix brachista HOM05D001611 ORTHO05D001464 1.9e-08 62.8 88 40.9
Migut.K00062 Erythranthe guttata HOM05D001611 ORTHO05D001464 2.5e-08 62.4 102 39.2
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 3.2e-08 62.0 77 44.2
BcaB04g21091 Brassica carinata HOM05D003863 ORTHO05D004372 4.2e-08 61.6 77 45.5
Manes.09G030700 Manihot esculenta HOM05D001611 ORTHO05D001464 5.5e-08 61.2 91 38.5
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 7.1e-08 60.8 55 49.1
SGA_v2.0_scaffold273G46447 Striga asiatica HOM05D001611 ORTHO05D001464 7.1e-08 60.8 91 41.8
Lsat_1_v5_gn_9_28441 Lactuca sativa HOM05D001611 ORTHO05D001464 9.3e-08 60.5 102 38.2
EL10Ac3g06982 Beta vulgaris HOM05D001611 ORTHO05D001464 1.2e-07 60.1 93 38.7
HanXRQChr13g0417341 Helianthus annuus HOM05D001611 ORTHO05D001464 1.2e-07 60.1 91 40.7
HanXRQChr10g0291881 Helianthus annuus HOM05D001611 ORTHO05D001464 1.6e-07 59.7 92 40.2
Oeu033758.1 Olea europaea HOM05D001611 ORTHO05D001464 1.6e-07 59.7 98 37.8
Hund24756 Selenicereus undatus HOM05D001611 ORTHO05D001464 1.6e-07 59.7 93 39.8
TAR633G0901 Trochodendron aralioides HOM05D001611 ORTHO05D001464 1.6e-07 59.7 91 40.7
Ah.04g152060 Amaranthus hybridus HOM05D001611 ORTHO05D001464 2.1e-07 59.3 54 48.1
CAN.G62.59 Capsicum annuum HOM05D001611 ORTHO05D001464 2.1e-07 59.3 84 42.9
MBI04_g14255_MAGBIO Magnolia biondii HOM05D001611 ORTHO05D001464 2.1e-07 59.3 91 44.0
BcaC09g48222 Brassica carinata HOM05D003863 ORTHO05D004372 2.7e-07 58.9 77 44.2
Potri.016G051000 Populus trichocarpa HOM05D001611 ORTHO05D001464 2.7e-07 58.9 90 37.8
Nn2g15496 Nelumbo nucifera HOM05D001611 ORTHO05D001464 3.5e-07 58.5 52 48.1
TAR374G0060 Trochodendron aralioides HOM05D001611 ORTHO05D001464 4.6e-07 58.2 93 43.0
MSTRG.10831 Avicennia marina HOM05D001611 ORTHO05D001464 6.0e-07 57.8 91 38.5
ECA233G1349 Erigeron canadensis HOM05D000214 ORTHO05D000131 6.0e-07 57.8 90 43.3
Lsat_1_v5_gn_6_88901 Lactuca sativa HOM05D001611 ORTHO05D001464 6.0e-07 57.8 50 50.0
Lalb_Chr16g0379811 Lupinus albus HOM05D001611 ORTHO05D001464 6.0e-07 57.8 55 49.1
Nn1g01229 Nelumbo nucifera HOM05D001611 ORTHO05D001464 6.0e-07 57.8 96 42.7
Lju124A33T33 Lonicera japonica HOM05D001611 ORTHO05D001464 7.9e-07 57.4 49 46.9
BcaC05g25194 Brassica carinata HOM05D000274 ORTHO05D006767 1.0e-06 57.0 55 49.1
CSS0009605 Camellia sinensis var. sinensis HOM05D001611 ORTHO05D001464 1.0e-06 57.0 88 40.9
Dinv32380 Davidia involucrata HOM05D001611 ORTHO05D001464 1.0e-06 57.0 90 43.3
Oeu026880.1 Olea europaea HOM05D001611 ORTHO05D001464 1.0e-06 57.0 93 39.8
Cc02_g36670 Coffea canephora HOM05D001611 ORTHO05D001464 1.3e-06 56.6 87 44.8
PSO384G4669 Papaver somniferum HOM05D001611 ORTHO05D001464 1.3e-06 56.6 50 50.0
CSS0000566 Camellia sinensis var. sinensis HOM05D001611 ORTHO05D001464 1.8e-06 56.2 58 48.3
Cfa012028 Carpinus fangiana HOM05D001611 ORTHO05D001464 1.8e-06 56.2 61 47.5
HanXRQChr07g0188611 Helianthus annuus HOM05D001611 ORTHO05D001464 1.8e-06 56.2 90 41.1
Oeu056796.1 Olea europaea HOM05D001611 ORTHO05D001464 2.3e-06 55.8 86 39.5
Aqoxy7G00625 Aquilegia oxysepala HOM05D001611 ORTHO05D001464 3.0e-06 55.5 86 41.9
BraA09t41735Z Brassica rapa HOM05D001611 ORTHO05D001464 3.0e-06 55.5 55 50.9
Dinv43713 Davidia involucrata HOM05D001611 ORTHO05D001464 3.0e-06 55.5 50 52.0
MBI04_g35278_MAGBIO Magnolia biondii HOM05D001611 ORTHO05D001464 3.0e-06 55.5 93 39.8
Oeu040061.1 Olea europaea HOM05D001611 ORTHO05D001464 3.0e-06 55.5 52 48.1
Peaxi162Scf00102g01229 Petunia axillaris HOM05D001611 ORTHO05D001464 3.0e-06 55.5 52 50.0
SMO115G0342 Selaginella moellendorffii HOM05D001611 ORTHO05D001464 3.0e-06 55.5 100 39.0
vmacro14038 Vaccinium macrocarpon HOM05D001611 ORTHO05D001464 3.0e-06 55.5 95 43.2
HPP92_027174 Vanilla planifolia HOM05D001611 ORTHO05D001464 3.0e-06 55.5 93 38.7
arahy.Tifrunner.gnm1.ann1.IGB9EV Arachis hypogaea HOM05D008068 ORTHO05D086872 3.9e-06 55.1 77 48.1
AUR62025967 Chenopodium quinoa HOM05D001611 ORTHO05D001464 3.9e-06 55.1 93 37.6
Lsat_1_v5_gn_6_9661 Lactuca sativa HOM05D001611 ORTHO05D001464 3.9e-06 55.1 88 38.6
Nitab4.5_0003912g0040 Nicotiana tabacum HOM05D001611 ORTHO05D001464 3.9e-06 55.1 88 42.0
Sabra16G0054800 Salix brachista HOM05D001611 ORTHO05D001464 3.9e-06 55.1 90 37.8
TAR104G0002 Trochodendron aralioides HOM05D001611 ORTHO05D001464 3.9e-06 55.1 99 43.4
BcaB07g31813 Brassica carinata HOM05D001611 ORTHO05D001464 5.1e-06 54.7 89 42.7
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 6.7e-06 54.3 94 41.5
CiPaw.02G167500 Carya illinoinensis HOM05D001611 ORTHO05D001464 6.7e-06 54.3 52 44.2
DCAR_000862 Daucus carota HOM05D001611 ORTHO05D001464 6.7e-06 54.3 61 45.9
Peaxi162Scf00959g00317 Petunia axillaris HOM05D001611 ORTHO05D001464 6.7e-06 54.3 88 42.0
arahy.Tifrunner.gnm1.ann1.EP6HK9 Arachis hypogaea HOM05D001611 ORTHO05D001464 8.7e-06 53.9 52 46.2
Rhsim07G0101000 Rhododendron simsii HOM05D001611 ORTHO05D001464 8.7e-06 53.9 95 42.1
Sp2g01730 Schrenkiella parvula HOM05D001611 ORTHO05D001464 8.7e-06 53.9 87 39.1
PGSC0003DMG400012484 Solanum tuberosum HOM05D001611 ORTHO05D001464 8.7e-06 53.9 96 39.6


User provided reference genes

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