Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y8CXQ2 Arachis hypogaea HOM05D004403 ORTHO05D006164 2.6e-133 478.8 255 100.0
arahy.Tifrunner.gnm1.ann1.R8RU34 Arachis hypogaea HOM05D004403 ORTHO05D006164 9.1e-78 294.3 209 77.5
Lalb_Chr03g0033081 Lupinus albus HOM05D004403 ORTHO05D006164 5.5e-75 285.0 209 74.2
Glyma.16G203900 Glycine max HOM05D004403 ORTHO05D006164 7.2e-75 284.6 209 74.2
Phvul.004G126600 Phaseolus vulgaris HOM05D004403 ORTHO05D006164 9.5e-75 284.3 209 74.2
VMungo0464G1100 Vigna mungo HOM05D004403 ORTHO05D006164 9.5e-75 284.3 209 74.2
Medtr6g461810 Medicago truncatula HOM05D004403 ORTHO05D006164 2.1e-74 283.1 209 71.8
Psat1g115160 Pisum sativum HOM05D004403 ORTHO05D006164 2.8e-74 282.7 209 72.2
Glyma.09G153100 Glycine max HOM05D004403 ORTHO05D006164 3.6e-74 282.3 209 74.2
Ca_26390_v3 Cicer arietinum L. HOM05D004403 ORTHO05D006164 6.1e-74 281.6 209 72.2
CiPaw.04G063300 Carya illinoinensis HOM05D004403 ORTHO05D006164 5.7e-72 275.0 210 71.0
Haze_13825 Corylus avellana HOM05D004403 ORTHO05D006164 7.5e-72 274.6 210 70.5
Lj2g0001335 Lotus japonicus HOM05D004403 ORTHO05D006164 9.8e-72 274.2 209 71.3
QL12p039581 Quercus lobata HOM05D004403 ORTHO05D006164 1.3e-71 273.9 210 70.0
Cfa008231 Carpinus fangiana HOM05D004403 ORTHO05D006164 3.7e-71 272.3 210 70.0
Atru.chr1.628 Acer truncatum HOM05D004403 ORTHO05D006164 8.3e-71 271.2 210 69.0
Prupe.2G282700 Prunus persica HOM05D004403 ORTHO05D006164 8.3e-71 271.2 210 70.0
TAR375G0129 Trochodendron aralioides HOM05D004403 ORTHO05D006164 1.1e-70 270.8 210 68.6
Duzib205G1350 Durio zibethinus HOM05D004403 ORTHO05D006164 3.2e-70 269.2 210 68.1
GSVIVG01018506001 Vitis vinifera HOM05D004403 ORTHO05D006164 9.2e-70 267.7 210 67.6
Manes.06G138300 Manihot esculenta HOM05D004403 ORTHO05D006164 1.2e-69 267.3 210 68.1
Ciclev10004147m.g Citrus clementina HOM05D004403 ORTHO05D006164 1.6e-69 266.9 206 68.4
Nn1g01207 Nelumbo nucifera HOM05D004403 ORTHO05D006164 2.0e-69 266.5 210 69.0
Actinidia25041 Actinidia chinensis HOM05D004403 ORTHO05D006164 7.8e-69 264.6 203 70.0
Aqoxy7G00599 Aquilegia oxysepala HOM05D004403 ORTHO05D006164 7.8e-69 264.6 210 66.7
Hma1.2p1_0099F.1_g048870 Hydrangea macrophylla HOM05D004403 ORTHO05D006164 1.0e-68 264.2 207 67.6
Eucgr.K00143 Eucalyptus grandis HOM05D004403 ORTHO05D006164 2.9e-68 262.7 210 67.6
PSO782G0596 Papaver somniferum HOM05D004403 ORTHO05D006164 2.9e-68 262.7 210 66.2
FAN03G1790 Fragaria x ananassa HOM05D004403 ORTHO05D006164 3.9e-68 262.3 210 67.6
MBI04_g32240_MAGBIO Magnolia biondii HOM05D004403 ORTHO05D006164 5.0e-68 261.9 210 66.2
Gohir.A09G043600 Gossypium hirsutum HOM05D004403 ORTHO05D006164 8.6e-68 261.2 210 66.7
Gorai.006G065300 Gossypium raimondii HOM05D004403 ORTHO05D006164 8.6e-68 261.2 210 66.7
Sed0016961 Sechium edule HOM05D004403 ORTHO05D006164 1.1e-67 260.8 209 66.5
EL10Ac3g05779 Beta vulgaris HOM05D004403 ORTHO05D006164 1.5e-67 260.4 210 68.6
FAN01G1597 Fragaria x ananassa HOM05D004403 ORTHO05D006164 1.9e-67 260.0 210 67.1
FAN10G1553 Fragaria x ananassa HOM05D004403 ORTHO05D006164 1.9e-67 260.0 210 66.7
RcHm_v2.0_Chr1g0375181 Rosa chinensis HOM05D004403 ORTHO05D006164 1.9e-67 260.0 210 66.7
FvH4_7g28210 Fragaria vesca HOM05D004403 ORTHO05D006164 3.3e-67 259.2 210 66.7
FAN06G1852 Fragaria x ananassa HOM05D004403 ORTHO05D006164 3.3e-67 259.2 210 66.7
FAN06G4744 Fragaria x ananassa HOM05D004403 ORTHO05D006164 3.3e-67 259.2 210 66.7
PSO478G4614 Papaver somniferum HOM05D004403 ORTHO05D006164 3.3e-67 259.2 210 65.2
FAN03G0558 Fragaria x ananassa HOM05D004403 ORTHO05D006164 4.3e-67 258.8 210 66.7
Gohir.D09G045100 Gossypium hirsutum HOM05D004403 ORTHO05D006164 4.3e-67 258.8 210 66.2
CsaV3_2G009710 Cucumis sativus L. HOM05D004403 ORTHO05D006164 5.6e-67 258.5 209 66.0
Lj8C36G18 Lonicera japonica HOM05D004403 ORTHO05D006164 7.3e-67 258.1 204 66.7
Hund11791 Selenicereus undatus HOM05D004403 ORTHO05D006164 7.3e-67 258.1 210 66.7
CSS0005074 Camellia sinensis var. sinensis HOM05D004403 ORTHO05D006164 9.5e-67 257.7 207 66.7
Dinv22934 Davidia involucrata HOM05D004403 ORTHO05D006164 9.5e-67 257.7 207 66.7
PGR142G2186 Punica granatum HOM05D004403 ORTHO05D006164 9.5e-67 257.7 210 66.2
THA.LOC104825074 Tarenaya hassleriana HOM05D004403 ORTHO05D006164 9.5e-67 257.7 210 64.3
Thecc.03G162000 Theobroma cacao HOM05D004403 ORTHO05D006164 1.2e-66 257.3 210 64.8
vmacro06764 Vaccinium macrocarpon HOM05D004403 ORTHO05D006164 1.2e-66 257.3 227 62.6
Ah.07g208350 Amaranthus hybridus HOM05D004403 ORTHO05D006164 2.1e-66 256.5 210 65.2
MELO3C008722.2 Cucumis melo HOM05D004403 ORTHO05D006164 2.1e-66 256.5 209 65.6
Sc17g0003760 Simmondsia chinensis HOM05D004403 ORTHO05D006164 1.0e-65 254.2 210 66.7
TPR.G11029 Trifolium pratense HOM05D004403 ORTHO05D006164 1.0e-65 254.2 151 86.1
AL8G25910 Arabidopsis lyrata HOM05D004403 ORTHO05D006164 1.4e-65 253.8 210 64.3
Carub.0008s1166 Capsella rubella HOM05D004403 ORTHO05D006164 1.4e-65 253.8 210 64.3
TWI39G0431 Tripterygium wilfordii HOM05D004403 ORTHO05D006164 1.4e-65 253.8 206 66.5
AT5G51660 Arabidopsis thaliana HOM05D004403 ORTHO05D006164 2.3e-65 253.1 210 64.3
Thhalv10012441m.g Eutrema salsugineum HOM05D004403 ORTHO05D006164 2.3e-65 253.1 210 63.8
Potri.012G022700 Populus trichocarpa HOM05D004403 ORTHO05D006164 2.3e-65 253.1 208 67.3
Sp6g13860 Schrenkiella parvula HOM05D004403 ORTHO05D006164 6.8e-65 251.5 210 62.9
Solyc03g007100.3 Solanum lycopersicum HOM05D004403 ORTHO05D006164 1.5e-64 250.4 207 65.2
Sopen03g003090 Solanum pennellii HOM05D004403 ORTHO05D006164 1.5e-64 250.4 207 65.2
Migut.F01168 Erythranthe guttata HOM05D004403 ORTHO05D006164 2.0e-64 250.0 207 64.3
MD01G1186100 Malus domestica HOM05D004403 ORTHO05D006164 2.0e-64 250.0 210 65.7
CAN.G916.4 Capsicum annuum HOM05D004403 ORTHO05D006164 4.4e-64 248.8 207 64.7
AUR62016090 Chenopodium quinoa HOM05D004403 ORTHO05D006164 7.5e-64 248.1 210 65.2
AUR62035037 Chenopodium quinoa HOM05D004403 ORTHO05D006164 7.5e-64 248.1 210 65.2
HanXRQChr08g0214911 Helianthus annuus HOM05D004403 ORTHO05D006164 7.5e-64 248.1 207 63.8
DCAR_005517 Daucus carota HOM05D004403 ORTHO05D006164 4.9e-63 245.4 207 62.3
Aa31LG3G8090 Aethionema arabicum HOM05D004403 ORTHO05D006164 6.4e-63 245.0 210 62.9
Sabra12G0011100 Salix brachista HOM05D004403 ORTHO05D006164 6.4e-63 245.0 204 66.2
Peaxi162Scf00192g01018 Petunia axillaris HOM05D004403 ORTHO05D006164 1.1e-62 244.2 201 66.2
BcaB05g23994 Brassica carinata HOM05D004403 ORTHO05D006164 3.2e-62 242.7 210 61.9
ECA233G5768 Erigeron canadensis HOM05D004403 ORTHO05D006164 3.2e-62 242.7 207 62.3
Lsat_1_v5_gn_8_8061 Lactuca sativa HOM05D004403 ORTHO05D006164 3.2e-62 242.7 207 62.8
SalBow2G1183 Salvia bowleyana HOM05D004403 ORTHO05D006164 3.2e-62 242.7 207 62.8
BcaC03g14584 Brassica carinata HOM05D004403 ORTHO05D006164 5.4e-62 241.9 210 61.4
A02p12180 Brassica napus HOM05D004403 ORTHO05D006164 5.4e-62 241.9 210 61.4
C02p20300 Brassica napus HOM05D004403 ORTHO05D006164 5.4e-62 241.9 210 61.4
BolC2t08162H Brassica oleracea HOM05D004403 ORTHO05D006164 5.4e-62 241.9 210 61.4
BraA02t06282Z Brassica rapa HOM05D004403 ORTHO05D006164 5.4e-62 241.9 210 61.4
Oeu021730.2 Olea europaea HOM05D004403 ORTHO05D006164 7.0e-62 241.5 207 64.3
Rhsim03G0172000 Rhododendron simsii HOM05D004403 ORTHO05D006164 7.0e-62 241.5 223 61.0
SGA_v2.0_scaffold303G47887 Striga asiatica HOM05D004403 ORTHO05D006164 1.2e-61 240.7 207 62.8
DCAR_016012 Daucus carota HOM05D004403 ORTHO05D006164 3.5e-61 239.2 207 61.4
Cc02_g03860 Coffea canephora HOM05D004403 ORTHO05D006164 6.0e-61 238.4 207 64.3
HPP92_003527 Vanilla planifolia HOM05D004403 ORTHO05D006164 1.0e-60 237.7 209 61.2
ClCG09G013390 Citrullus lanatus HOM05D004403 ORTHO05D006164 7.3e-59 231.5 163 74.8
CDE12G0834 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 1.6e-58 230.3 143 78.3
CARHR264430 Cardamine hirsuta HOM05D004403 ORTHO05D006164 2.8e-58 229.6 210 58.6
arahy.Tifrunner.gnm1.ann1.ZK7SIQ Arachis hypogaea HOM05D004403 ORTHO05D006164 4.7e-58 228.8 209 65.1
ATR0810G058 Amborella trichopoda HOM05D004403 ORTHO05D006164 6.2e-58 228.4 210 59.0
COL.COLO4_14185 Corchorus olitorius HOM05D004403 ORTHO05D006164 8.1e-58 228.0 139 81.3
Cpa.g.sc3.264 Carica papaya HOM05D004403 ORTHO05D006164 1.1e-57 227.6 210 61.0
unitig_0.g469 Utricularia gibba HOM05D004403 ORTHO05D006164 3.1e-57 226.1 206 58.7
Zm00001eb086790 Zea mays HOM05D004403 ORTHO05D006164 4.9e-55 218.8 210 58.1
CDE12G0426 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 1.4e-46 190.7 138 72.5
Pp3c11_8810 Physcomitrium patens HOM05D004403 ORTHO05D006164 3.2e-46 189.5 207 50.7
AagrBONN_evm.TU.Sc2ySwM_228.3689 Anthoceros agrestis HOM05D004403 ORTHO05D006164 7.1e-46 188.3 199 51.3
HanXRQChr02g0041381 Helianthus annuus HOM05D004403 ORTHO05D006164 9.2e-46 188.0 160 62.5
SEGI_12165 Sequoiadendron giganteum HOM05D004403 ORTHO05D006164 6.0e-45 185.3 139 70.5
SMO356G0002 Selaginella moellendorffii HOM05D004403 ORTHO05D006164 5.2e-41 172.2 211 47.4
Mapoly0021s0083 Marchantia polymorpha HOM05D004403 ORTHO05D006164 6.8e-41 171.8 211 47.4
CBR_g28568 Chara braunii HOM05D004403 ORTHO05D006164 3.8e-31 139.4 217 39.2
arahy.Tifrunner.gnm1.ann1.5J7MDZ Arachis hypogaea HOM05D004403 ORTHO05D016646 2.7e-21 106.7 65 89.2
CDE04G0245 Ceratophyllum demersum HOM05D002993 ORTHO05D003432 1.5e-16 90.9 66 72.7
Nitab4.5_0009404g0010 Nicotiana tabacum HOM05D004403 ORTHO05D006164 2.6e-16 90.1 100 53.0
MCO07G456 Micromonas commoda HOM05D004403 ORTHO05D006164 1.4e-14 84.3 204 32.4
PRCOL_00006166 Prasinoderma coloniale HOM05D004403 ORTHO05D006164 4.1e-09 66.2 130 30.0
Nitab4.5_0000072g0400 Nicotiana tabacum HOM05D004403 ORTHO05D006164 9.0e-09 65.1 44 77.3
TPR.G10680 Trifolium pratense HOM05D004403 ORTHO05D006164 1.9e-06 57.4 33 75.8
Cre13.g573450 Chlamydomonas reinhardtii HOM05D004403 ORTHO05D006164 5.5e-06 55.8 187 23.5


User provided reference genes

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