Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.5e-78 296.2 156 100.0
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 7.6e-67 257.3 174 84.5
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 3.7e-21 105.5 63 95.2
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 1.0e-18 97.4 63 87.3
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.1e-14 84.0 61 77.0
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 9.7e-14 80.9 61 72.1
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 1.7e-13 80.1 61 70.5
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 1.1e-12 77.4 67 67.2
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.1e-12 77.4 61 68.9
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 5.3e-12 75.1 61 67.2
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 7.0e-12 74.7 61 70.5
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 7.0e-12 74.7 61 65.6
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 9.1e-12 74.3 61 68.9
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 9.1e-12 74.3 61 68.9
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 9.1e-12 74.3 59 72.9
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.2e-11 73.9 59 69.5
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 1.2e-11 73.9 59 71.2
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.6e-11 73.6 61 65.6
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.6e-11 73.6 61 67.2
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.0e-11 73.2 61 65.6
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.0e-11 73.2 61 65.6
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.0e-11 73.2 61 67.2
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 2.6e-11 72.8 61 67.2
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.6e-11 72.8 61 67.2
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 2.6e-11 72.8 118 41.5
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 3.5e-11 72.4 61 63.9
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 4.5e-11 72.0 61 63.9
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 4.5e-11 72.0 61 65.6
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 4.5e-11 72.0 61 67.2
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 5.9e-11 71.6 77 55.8
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 5.9e-11 71.6 62 64.5
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 5.9e-11 71.6 62 64.5
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 5.9e-11 71.6 61 68.9
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 7.7e-11 71.2 61 68.9
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 7.7e-11 71.2 71 59.2
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 7.7e-11 71.2 61 63.9
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 7.7e-11 71.2 61 67.2
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 1.0e-10 70.9 59 67.8
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.3e-10 70.5 59 66.1
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 1.7e-10 70.1 61 62.3
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.7e-10 70.1 61 67.2
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 1.7e-10 70.1 61 67.2
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.2e-10 69.7 61 67.2
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 2.2e-10 69.7 57 64.9
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.9e-10 69.3 74 54.1
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 2.9e-10 69.3 60 66.7
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 2.9e-10 69.3 61 63.9
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 3.8e-10 68.9 61 63.9
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 3.8e-10 68.9 60 66.7
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 5.0e-10 68.6 61 65.6
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 5.0e-10 68.6 62 62.9
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 5.0e-10 68.6 59 67.8
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 6.5e-10 68.2 59 67.8
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 6.5e-10 68.2 61 62.3
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 8.5e-10 67.8 59 66.1
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 8.5e-10 67.8 61 65.6
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 1.1e-09 67.4 59 66.1
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.1e-09 67.4 61 63.9
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 1.5e-09 67.0 61 60.7
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.5e-09 67.0 59 62.7
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 1.5e-09 67.0 60 66.7
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 1.5e-09 67.0 61 65.6
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 2.5e-09 66.2 60 65.0
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 3.2e-09 65.9 59 66.1
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 5.5e-09 65.1 57 66.7
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 5.5e-09 65.1 57 66.7
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 7.2e-09 64.7 61 59.0
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 7.2e-09 64.7 50 72.0
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.2e-08 63.9 59 59.3
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.6e-08 63.5 58 63.8
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.6e-08 63.5 61 62.3
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.6e-08 63.5 61 62.3
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 3.6e-08 62.4 100 45.0
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 4.7e-08 62.0 58 60.3
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 4.7e-08 62.0 59 59.3
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 4.7e-08 62.0 61 60.7
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 4.7e-08 62.0 59 59.3
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 6.1e-08 61.6 61 59.0
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 8.0e-08 61.2 59 59.3
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 2.3e-07 59.7 59 57.6
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 4.0e-07 58.9 59 54.2
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 5.2e-07 58.5 59 62.7
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 5.2e-07 58.5 59 61.0
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 6.7e-07 58.2 59 61.0
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 6.7e-07 58.2 59 61.0
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 6.7e-07 58.2 61 55.7
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 6.7e-07 58.2 104 42.3
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 6.7e-07 58.2 59 59.3
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.2e-06 57.4 61 57.4
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.2e-06 57.4 61 57.4
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.5e-06 57.0 61 55.7
arahy.Tifrunner.gnm1.ann1.CEWT6L Arachis hypogaea HOM05D001036 ORTHO05D001852 2.6e-06 56.2 31 77.4
arahy.Tifrunner.gnm1.ann1.NE0GCA Arachis hypogaea HOM05D001036 ORTHO05D001852 2.6e-06 56.2 31 77.4
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 3.3e-06 55.8 55 61.8
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 3.3e-06 55.8 55 61.8
arahy.Tifrunner.gnm1.ann1.5K396S Arachis hypogaea HOM05D001607 ORTHO05D001893 5.7e-06 55.1 27 92.6
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 5.7e-06 55.1 60 56.7
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 7.5e-06 54.7 59 55.9


User provided reference genes

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