Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X9H6X4 Arachis hypogaea HOM05D002391 ORTHO05D003966 3.1e-69 265.0 131 100.0
arahy.Tifrunner.gnm1.ann1.LY1D8B Arachis hypogaea HOM05D002391 ORTHO05D003966 2.4e-34 149.1 88 86.4
arahy.Tifrunner.gnm1.ann1.X7MPPU Arachis hypogaea HOM05D002391 ORTHO05D003966 2.4e-34 149.1 88 85.2
arahy.Tifrunner.gnm1.ann1.M8XQ0K Arachis hypogaea HOM05D002391 ORTHO05D003966 1.2e-33 146.7 88 84.1
arahy.Tifrunner.gnm1.ann1.RPDR7L Arachis hypogaea HOM05D002391 ORTHO05D003966 2.3e-32 142.5 94 80.9
VMungo1309G2974 Vigna mungo HOM05D002391 ORTHO05D003966 1.1e-23 113.6 83 68.7
arahy.Tifrunner.gnm1.ann1.0D88S7 Arachis hypogaea HOM05D002391 ORTHO05D003966 2.8e-22 109.0 62 87.1
Phvul.009G258200 Phaseolus vulgaris HOM05D002391 ORTHO05D003966 8.1e-22 107.5 70 72.9
Lj1g0027291 Lotus japonicus HOM05D002391 ORTHO05D003966 1.1e-21 107.1 96 63.5
Medtr7g118240 Medicago truncatula HOM05D002391 ORTHO05D003966 3.1e-21 105.5 74 73.0
TPR.G4775 Trifolium pratense HOM05D002391 ORTHO05D003966 9.0e-21 104.0 68 76.5
Ca_09548_v3 Cicer arietinum L. HOM05D002391 ORTHO05D003966 2.0e-20 102.8 71 71.8
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 2.0e-20 102.8 107 56.1
Ciclev10023955m.g Citrus clementina HOM05D002391 ORTHO05D003966 3.4e-20 102.1 105 56.2
Duzib138G0669 Durio zibethinus HOM05D002391 ORTHO05D003966 5.8e-20 101.3 97 54.6
Glyma.03G261200 Glycine max HOM05D002391 ORTHO05D003966 1.0e-19 100.5 75 68.0
Manes.01G239601 Manihot esculenta HOM05D002391 ORTHO05D003966 1.3e-19 100.1 78 66.7
Potri.014G105900 Populus trichocarpa HOM05D002391 ORTHO05D003966 3.8e-19 98.6 68 70.6
MD01G1088700 Malus domestica HOM05D002391 ORTHO05D003966 8.4e-19 97.4 105 54.3
Haze_15788 Corylus avellana HOM05D002391 ORTHO05D003966 1.1e-18 97.1 98 57.1
Cfa003698 Carpinus fangiana HOM05D002391 ORTHO05D003966 1.9e-18 96.3 93 58.1
QL04p053388 Quercus lobata HOM05D002391 ORTHO05D003966 2.5e-18 95.9 70 71.4
Atru.chr5.770 Acer truncatum HOM05D002391 ORTHO05D003966 4.2e-18 95.1 88 60.2
Sabra14G0078000 Salix brachista HOM05D002391 ORTHO05D003966 4.2e-18 95.1 90 55.6
BcaB05g23974 Brassica carinata HOM05D002391 ORTHO05D003966 7.1e-18 94.4 85 55.3
CANSAT35G0902 Cannabis sativa HOM05D002391 ORTHO05D003966 7.1e-18 94.4 105 56.2
Lalb_Chr15g0076551 Lupinus albus HOM05D002391 ORTHO05D003966 7.1e-18 94.4 99 53.5
Actinidia28084 Actinidia chinensis HOM05D002391 ORTHO05D003966 9.3e-18 94.0 66 71.2
A01p25040 Brassica napus HOM05D002391 ORTHO05D003966 9.3e-18 94.0 88 54.5
BraA01t02415Z Brassica rapa HOM05D002391 ORTHO05D003966 9.3e-18 94.0 88 55.7
Carub.0006s3579 Capsella rubella HOM05D002391 ORTHO05D003966 9.3e-18 94.0 75 65.3
Ah.05g178930 Amaranthus hybridus HOM05D002391 ORTHO05D003966 2.1e-17 92.8 98 54.1
FAN03G1958 Fragaria x ananassa HOM05D002391 ORTHO05D003966 2.1e-17 92.8 86 57.0
FAN06G0076 Fragaria x ananassa HOM05D002391 ORTHO05D003966 2.1e-17 92.8 86 57.0
RcHm_v2.0_Chr1g0361141 Rosa chinensis HOM05D002391 ORTHO05D003966 2.1e-17 92.8 116 48.3
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 2.7e-17 92.4 87 58.6
COL.COLO4_23049 Corchorus olitorius HOM05D002391 ORTHO05D003966 2.7e-17 92.4 102 53.9
FvH4_7g17740 Fragaria vesca HOM05D002391 ORTHO05D003966 2.7e-17 92.4 86 57.0
Gohir.A12G191400 Gossypium hirsutum HOM05D002391 ORTHO05D003966 2.7e-17 92.4 98 52.0
AT4G01400 Arabidopsis thaliana HOM05D002391 ORTHO05D003966 3.5e-17 92.0 61 72.1
GSVIVG01027442001 Vitis vinifera HOM05D002391 ORTHO05D003966 3.5e-17 92.0 97 55.7
CAN.G1524.2 Capsicum annuum HOM05D002391 ORTHO05D003966 4.6e-17 91.7 66 68.2
Cpa.g.sc193.15 Carica papaya HOM05D002391 ORTHO05D003966 4.6e-17 91.7 70 65.7
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 6.0e-17 91.3 60 75.0
Gohir.D12G120300 Gossypium hirsutum HOM05D002391 ORTHO05D003966 6.0e-17 91.3 95 52.6
Gohir.D12G193700 Gossypium hirsutum HOM05D002391 ORTHO05D003966 7.9e-17 90.9 98 51.0
Gorai.008G131000 Gossypium raimondii HOM05D002391 ORTHO05D003966 7.9e-17 90.9 95 52.6
Aqoxy7G00567 Aquilegia oxysepala HOM05D002391 ORTHO05D003966 1.0e-16 90.5 66 69.7
MBI15_g16775_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D003966 1.0e-16 90.5 97 54.6
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 1.8e-16 89.7 88 56.8
C01p31270 Brassica napus HOM05D002391 ORTHO05D003966 1.8e-16 89.7 88 56.8
Dinv29276 Davidia involucrata HOM05D002391 ORTHO05D003966 1.8e-16 89.7 70 62.9
Peaxi162Scf00003g00042 Petunia axillaris HOM05D002391 ORTHO05D003966 1.8e-16 89.7 66 65.2
THA.LOC104825900 Tarenaya hassleriana HOM05D002391 ORTHO05D003966 1.8e-16 89.7 116 48.3
BolC1t03066H Brassica oleracea HOM05D002391 ORTHO05D003966 3.0e-16 89.0 78 59.0
Prupe.2G196300 Prunus persica HOM05D002391 ORTHO05D003966 3.0e-16 89.0 67 64.2
Solyc11g068470.3 Solanum lycopersicum HOM05D002391 ORTHO05D003966 3.0e-16 89.0 108 48.1
Sopen11g027180 Solanum pennellii HOM05D002391 ORTHO05D003966 3.0e-16 89.0 135 44.4
SHI03317 Sapria himalayana HOM05D002391 ORTHO05D003966 5.1e-16 88.2 93 52.7
Migut.D01237 Erythranthe guttata HOM05D002391 ORTHO05D003966 6.7e-16 87.8 66 66.7
PGSC0003DMG400026340 Solanum tuberosum HOM05D002391 ORTHO05D003966 6.7e-16 87.8 108 47.2
MELO3C025032.2 Cucumis melo HOM05D002391 ORTHO05D003966 1.1e-15 87.0 112 47.3
Lj7E577T0 Lonicera japonica HOM05D002391 ORTHO05D003966 1.1e-15 87.0 98 52.0
Nitab4.5_0009345g0010 Nicotiana tabacum HOM05D002391 ORTHO05D003966 1.5e-15 86.7 66 65.2
Eucgr.L01374 Eucalyptus grandis HOM05D002391 ORTHO05D003966 1.9e-15 86.3 91 51.6
Nitab4.5_0000755g0080 Nicotiana tabacum HOM05D002391 ORTHO05D003966 1.9e-15 86.3 65 64.6
CsaV3_6G002540 Cucumis sativus L. HOM05D002391 ORTHO05D003966 2.5e-15 85.9 68 64.7
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 2.5e-15 85.9 99 50.5
Gohir.A12G116801 Gossypium hirsutum HOM05D002391 ORTHO05D003966 2.5e-15 85.9 98 51.0
Thecc.01G333200 Theobroma cacao HOM05D002391 ORTHO05D003966 2.5e-15 85.9 78 59.0
MSTRG.12369 Avicennia marina HOM05D002391 ORTHO05D003966 5.7e-15 84.7 100 47.0
PGR102G0931 Punica granatum HOM05D002391 ORTHO05D003966 5.7e-15 84.7 97 54.6
SalBow1G8542 Salvia bowleyana HOM05D002391 ORTHO05D003966 5.7e-15 84.7 62 64.5
Sed0015036 Sechium edule HOM05D002391 ORTHO05D003966 5.7e-15 84.7 70 62.9
Eucgr.H00258 Eucalyptus grandis HOM05D002391 ORTHO05D003966 7.4e-15 84.3 91 50.5
EL10Ac1g00185 Beta vulgaris HOM05D002391 ORTHO05D003966 1.3e-14 83.6 112 44.6
ClCG08G002040 Citrullus lanatus HOM05D002391 ORTHO05D003966 1.3e-14 83.6 68 64.7
Oeu035561.1 Olea europaea HOM05D002391 ORTHO05D003966 2.1e-14 82.8 62 64.5
Lsat_1_v5_gn_6_26301 Lactuca sativa HOM05D002391 ORTHO05D003966 2.8e-14 82.4 94 52.1
SGA_v2.0_scaffold6G03348 Striga asiatica HOM05D002391 ORTHO05D003966 4.8e-14 81.6 128 42.2
ATR0057G041 Amborella trichopoda HOM05D002391 ORTHO05D003966 1.8e-13 79.7 94 52.1
CSS0033944 Camellia sinensis var. sinensis HOM05D002391 ORTHO05D003966 2.4e-13 79.3 66 60.6
CSS0028258 Camellia sinensis var. sinensis HOM05D002391 ORTHO05D003966 9.0e-13 77.4 66 59.1
Sc01g0002180 Simmondsia chinensis HOM05D002391 ORTHO05D003966 1.2e-12 77.0 127 44.1
FAN06G1021 Fragaria x ananassa HOM05D002391 ORTHO05D003966 1.5e-12 76.6 94 46.8
PSO063G3400 Papaver somniferum HOM05D002391 ORTHO05D003966 2.6e-12 75.9 95 48.4
CSS0012072 Camellia sinensis var. sinensis HOM05D002391 ORTHO05D003966 3.4e-12 75.5 69 56.5
PSO782G4179 Papaver somniferum HOM05D002391 ORTHO05D003966 2.9e-11 72.4 95 47.4
DCAR_007693 Daucus carota HOM05D002391 ORTHO05D003966 1.9e-10 69.7 63 58.7
Gorai.002G176800 Gossypium raimondii HOM05D002391 ORTHO05D003966 1.2e-09 67.0 69 50.7
HanXRQChr13g0401531 Helianthus annuus HOM05D002391 ORTHO05D003966 1.6e-09 66.6 55 63.6
Gohir.D01G143333 Gossypium hirsutum HOM05D002391 ORTHO05D003966 2.7e-09 65.9 51 58.8
HanXRQChr15g0482971 Helianthus annuus HOM05D002391 ORTHO05D003966 1.0e-08 63.9 54 63.0
SEGI_01969 Sequoiadendron giganteum HOM05D002391 ORTHO05D003966 2.3e-08 62.8 73 42.5


User provided reference genes

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