Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 9.5e-176 620.2 333 100.0
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.1e-171 606.7 333 96.1
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 7.2e-99 364.8 309 68.9
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 5.3e-94 348.6 323 62.8
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 1.6e-85 320.5 301 66.8
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 2.0e-85 320.1 314 64.0
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 4.2e-83 312.4 341 57.5
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 2.7e-82 309.7 332 60.8
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 2.7e-82 309.7 335 59.1
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 1.8e-81 307.0 345 54.5
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 2.0e-80 303.5 332 59.6
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 5.9e-77 292.0 365 54.5
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 2.9e-76 289.7 338 54.1
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 5.0e-76 288.9 326 58.0
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 2.5e-75 286.6 337 51.9
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 3.3e-75 286.2 355 53.5
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 2.1e-74 283.5 284 60.6
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 2.1e-74 283.5 329 55.6
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 1.0e-73 281.2 334 55.4
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 2.3e-73 280.0 312 56.4
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 2.3e-73 280.0 330 55.2
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 2.3e-73 280.0 277 61.0
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 3.0e-73 279.6 280 60.0
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 4.0e-73 279.3 310 55.8
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 8.9e-73 278.1 315 55.6
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 8.9e-73 278.1 327 56.6
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 1.5e-72 277.3 310 56.1
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 2.0e-72 276.9 336 54.8
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 3.4e-72 276.2 338 53.3
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 3.4e-72 276.2 287 60.6
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 7.5e-72 275.0 358 53.1
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.3e-71 274.2 339 54.0
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.4e-70 270.8 326 55.5
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 2.4e-70 270.0 330 52.4
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.6e-69 267.3 325 54.2
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 7.8e-69 265.0 341 52.2
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 1.7e-68 263.8 246 65.4
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 2.9e-68 263.1 168 81.5
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.1e-67 261.2 324 53.4
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.5e-67 260.0 351 47.3
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 3.3e-67 259.6 351 53.0
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 5.6e-67 258.8 339 52.2
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 1.2e-66 257.7 335 51.6
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 1.2e-66 257.7 348 49.4
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.6e-66 257.3 333 53.2
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 8.9e-65 251.5 205 70.2
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 2.0e-64 250.4 304 55.3
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.7e-63 247.3 268 53.7
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 1.7e-63 247.3 335 51.6
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 6.4e-63 245.4 336 51.5
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.1e-62 244.6 355 49.6
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 1.4e-62 244.2 340 47.9
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 1.4e-62 244.2 257 56.0
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.4e-62 244.2 309 51.1
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 2.4e-62 243.4 186 71.5
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.4e-62 243.4 186 71.5
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 1.2e-61 241.1 310 49.0
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 2.0e-61 240.4 315 51.1
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 2.0e-61 240.4 336 49.4
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.7e-61 240.0 274 56.9
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 3.5e-61 239.6 168 76.2
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 4.6e-61 239.2 363 46.6
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 6.0e-61 238.8 225 61.8
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 1.0e-60 238.0 168 72.6
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 2.3e-60 236.9 321 48.9
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.1e-59 234.6 332 47.6
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 1.1e-59 234.6 331 47.4
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.9e-59 233.8 353 49.0
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 3.3e-59 233.0 340 49.7
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 4.7e-58 229.2 317 48.9
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 4.7e-58 229.2 301 50.8
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 6.2e-58 228.8 168 72.0
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 8.0e-58 228.4 225 58.7
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 8.0e-58 228.4 177 70.1
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 1.4e-57 227.6 225 60.4
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 1.8e-57 227.3 307 50.2
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 1.8e-57 227.3 309 49.2
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 1.8e-57 227.3 309 49.2
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 1.8e-57 227.3 309 49.2
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 4.0e-57 226.1 303 48.5
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 2.6e-56 223.4 344 43.9
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 9.8e-56 221.5 322 49.1
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 1.3e-55 221.1 314 47.5
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 2.9e-55 219.9 158 72.2
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 4.9e-55 219.2 299 49.2
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 6.4e-55 218.8 164 70.7
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 8.3e-55 218.4 265 52.1
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 1.4e-54 217.6 164 70.7
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.2e-53 214.5 209 64.1
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.2e-53 214.5 166 69.9
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 3.5e-53 213.0 164 70.1
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 4.6e-53 212.6 140 79.3
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 4.6e-53 212.6 140 79.3
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 1.9e-51 207.2 206 59.2
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 1.9e-51 207.2 308 47.4
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 2.8e-50 203.4 309 44.7
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 1.1e-49 201.4 206 54.9
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.4e-49 201.1 286 51.0
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 1.9e-46 190.7 186 57.0
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 2.7e-45 186.8 191 57.1
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 6.0e-45 185.7 259 50.2
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 1.7e-44 184.1 115 82.6
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 3.0e-44 183.3 287 47.0
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 1.2e-42 177.9 174 56.9
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 1.6e-42 177.6 124 73.4
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 2.3e-36 157.1 139 66.2
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 8.7e-36 155.2 95 90.5
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 3.3e-35 153.3 104 76.0
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 7.3e-35 152.1 240 45.0
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 4.0e-33 146.4 105 75.2
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 2.0e-32 144.1 123 65.0
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 2.5e-27 127.1 165 43.0
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 2.8e-26 123.6 72 87.5
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 4.8e-26 122.9 166 42.2
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 9.9e-24 115.2 71 83.1
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 2.4e-22 110.5 136 50.0
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 6.0e-21 105.9 64 85.9
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 2.3e-20 104.0 199 40.2
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 5.3e-17 92.8 75 70.7
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 1.5e-16 91.3 163 40.5
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 1.3e-12 78.2 212 39.6
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 3.3e-11 73.6 122 47.5
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 1.8e-09 67.8 142 39.4
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.2e-08 65.1 40 77.5
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 2.0e-08 64.3 128 36.7
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 4.5e-08 63.2 39 76.9
TPR.G8429 Trifolium pratense HOM05D006300 ORTHO05D007623 5.0e-07 59.7 39 76.9
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 3.2e-06 57.0 172 33.1


User provided reference genes

Program Settings