Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 2.6e-84 315.5 171 100.0
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 5.4e-82 307.8 171 97.1
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 5.8e-68 261.2 171 83.6
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 2.9e-67 258.8 171 84.2
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.4e-66 255.8 171 81.3
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 3.2e-66 255.4 171 81.9
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 4.1e-66 255.0 171 80.7
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 5.4e-66 254.6 171 81.9
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 7.0e-66 254.2 171 81.3
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 1.2e-65 253.4 171 81.3
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 1.6e-65 253.1 171 81.3
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 1.6e-65 253.1 171 80.1
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 3.5e-65 251.9 171 79.5
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 3.5e-65 251.9 171 80.1
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 3.5e-65 251.9 171 80.1
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 4.6e-65 251.5 171 81.3
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 6.0e-65 251.1 171 80.1
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 6.0e-65 251.1 171 81.3
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 6.0e-65 251.1 171 77.8
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 7.8e-65 250.8 171 81.3
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 2.3e-64 249.2 171 80.7
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 3.0e-64 248.8 171 78.4
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 3.9e-64 248.4 171 76.0
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 3.9e-64 248.4 171 79.5
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 8.6e-64 247.3 172 77.9
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 1.1e-63 246.9 171 80.7
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.1e-63 246.9 172 80.2
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.1e-63 246.9 172 79.7
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 1.9e-63 246.1 171 80.1
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 3.3e-63 245.4 171 78.4
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 5.6e-63 244.6 173 78.6
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 7.3e-63 244.2 171 78.4
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 7.3e-63 244.2 171 76.0
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 9.5e-63 243.8 173 80.3
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 9.5e-63 243.8 171 77.2
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 9.5e-63 243.8 171 76.0
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.6e-62 243.0 171 74.9
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 1.6e-62 243.0 173 78.6
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 3.6e-62 241.9 171 74.9
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 4.7e-62 241.5 171 76.6
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 4.7e-62 241.5 172 81.4
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 6.2e-62 241.1 171 76.0
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 1.1e-61 240.4 171 76.6
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.1e-61 240.4 172 77.9
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 1.4e-61 240.0 172 77.9
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 1.8e-61 239.6 171 74.9
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 1.8e-61 239.6 166 77.1
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 2.3e-61 239.2 171 74.3
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 3.1e-61 238.8 171 74.9
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 4.0e-61 238.4 171 74.3
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 4.0e-61 238.4 175 76.0
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 4.0e-61 238.4 171 77.2
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 5.2e-61 238.0 172 77.9
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 6.8e-61 237.7 171 73.7
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 1.2e-60 236.9 163 77.3
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.5e-60 236.5 171 72.5
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.5e-60 236.5 172 76.2
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 2.0e-60 236.1 171 76.6
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 2.6e-60 235.7 172 76.7
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 3.4e-60 235.3 171 75.4
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 1.3e-59 233.4 175 73.1
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 1.7e-59 233.0 171 76.0
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 1.7e-59 233.0 172 75.0
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.9e-59 232.3 174 76.4
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 4.9e-59 231.5 171 73.1
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 1.4e-58 229.9 173 74.0
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 2.4e-58 229.2 173 73.4
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 2.4e-58 229.2 173 72.3
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 3.2e-58 228.8 171 72.5
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 7.1e-58 227.6 173 72.8
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 1.2e-57 226.9 171 74.3
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 1.2e-57 226.9 173 73.4
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 3.5e-57 225.3 171 71.3
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 3.5e-57 225.3 177 71.2
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 7.8e-57 224.2 171 70.8
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 1.0e-56 223.8 171 72.5
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.0e-56 223.8 175 72.6
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 1.3e-56 223.4 171 71.3
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 1.3e-56 223.4 171 71.3
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 1.3e-56 223.4 171 71.3
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.3e-56 223.4 159 74.2
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 2.3e-56 222.6 173 69.9
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 2.3e-56 222.6 171 71.3
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 3.0e-56 222.2 168 74.4
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 3.9e-56 221.9 171 71.3
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 3.9e-56 221.9 171 71.3
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 5.1e-56 221.5 167 71.3
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 6.6e-56 221.1 157 77.7
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 8.6e-56 220.7 171 70.8
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 1.5e-55 219.9 171 70.2
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.5e-55 219.9 166 68.7
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 2.5e-55 219.2 171 69.6
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 2.5e-55 219.2 171 69.6
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 2.5e-55 219.2 171 68.4
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.3e-55 218.8 171 71.9
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 4.3e-55 218.4 171 70.8
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 5.6e-55 218.0 171 71.3
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 5.6e-55 218.0 171 71.3
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 7.3e-55 217.6 171 70.8
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 7.3e-55 217.6 172 68.6
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 9.5e-55 217.2 172 71.5
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 9.5e-55 217.2 172 71.5
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 1.2e-54 216.9 163 71.2
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 1.2e-54 216.9 171 70.8
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 1.6e-54 216.5 171 69.6
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.1e-54 216.1 167 70.1
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 2.8e-54 215.7 171 69.6
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 3.6e-54 215.3 171 70.8
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 1.1e-53 213.8 171 69.0
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 1.1e-53 213.8 171 69.6
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 1.1e-53 213.8 171 68.4
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.1e-53 213.8 173 71.7
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.1e-53 213.8 173 71.7
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 1.4e-53 213.4 171 69.6
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 1.4e-53 213.4 171 69.6
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 1.4e-53 213.4 172 68.0
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 1.4e-53 213.4 171 69.6
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 1.4e-53 213.4 171 69.6
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 1.4e-53 213.4 172 68.0
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 1.8e-53 213.0 171 66.1
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 1.8e-53 213.0 172 68.0
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 2.3e-53 212.6 172 68.0
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 2.3e-53 212.6 168 70.2
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 4.0e-53 211.8 173 67.6
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 4.0e-53 211.8 172 67.4
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 8.9e-53 210.7 172 70.3
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.2e-52 210.3 171 69.0
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 2.6e-52 209.1 172 69.8
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 9.9e-52 207.2 171 67.8
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 9.9e-52 207.2 172 69.2
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.7e-51 206.5 165 66.1
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 2.2e-51 206.1 169 68.6
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.7e-51 205.3 163 66.9
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 6.4e-51 204.5 173 68.8
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 1.1e-50 203.8 173 68.8
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 3.2e-50 202.2 171 66.1
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 6.0e-49 198.0 172 66.3
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 6.0e-49 198.0 148 77.0
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 2.1e-46 189.5 102 87.3
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 3.1e-45 185.7 102 86.3
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 9.9e-44 180.6 100 83.0
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 7.8e-41 171.0 100 79.0
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 6.6e-40 167.9 168 60.7
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 8.7e-40 167.5 167 60.5
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 6.2e-38 161.4 177 54.8
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.4e-37 160.2 149 60.4
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.8e-37 159.8 167 58.1
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.8e-37 159.8 217 46.5
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 7.6e-36 154.5 172 51.7
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.2e-34 149.1 168 48.8
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 1.6e-33 146.7 177 48.6
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 4.6e-33 145.2 166 47.6
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 6.0e-33 144.8 176 46.6
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 2.6e-28 129.4 174 48.9
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 2.6e-28 129.4 137 52.6
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 3.4e-28 129.0 137 50.4
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.8e-28 128.3 70 85.7
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.9e-27 125.2 70 82.9
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 3.2e-26 122.5 179 50.8
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 6.0e-25 118.2 117 51.3
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 1.3e-24 117.1 165 44.8
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.6e-20 102.8 67 73.1
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.2e-19 99.8 82 59.8
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 3.3e-15 85.9 44 88.6
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 2.7e-09 66.2 71 69.0
TAR628G0544 Trochodendron aralioides HOM05D004247 ORTHO05D004994 6.3e-06 55.1 66 63.6


User provided reference genes

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