Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 2.4e-198 695.3 345 100.0
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 1.0e-164 583.6 345 87.2
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 7.0e-73 278.5 378 47.1
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 3.5e-72 276.2 381 47.2
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 5.9e-72 275.4 387 44.7
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 8.3e-66 255.0 355 46.5
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 9.2e-65 251.5 399 43.1
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 2.0e-64 250.4 435 42.1
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 2.2e-58 230.3 357 44.0
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 2.7e-48 196.8 363 41.3
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 3.5e-48 196.4 387 39.3
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 4.6e-40 169.5 309 38.2
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 5.6e-38 162.5 355 35.8
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 4.5e-35 152.9 363 35.5
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 4.9e-34 149.4 374 35.6
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 3.2e-33 146.7 382 36.1
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 2.7e-32 143.7 357 36.4
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 3.0e-31 140.2 356 36.0
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 1.5e-30 137.9 365 35.1
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 2.8e-29 133.7 386 33.4
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 4.8e-29 132.9 370 34.1
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 2.4e-28 130.6 141 56.0
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 3.1e-28 130.2 364 34.6
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 1.2e-27 128.3 350 35.1
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.5e-27 127.9 360 34.4
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 1.3e-26 124.8 390 34.1
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 2.2e-26 124.0 351 34.2
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.9e-26 123.6 365 33.2
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 8.4e-26 122.1 362 32.9
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.1e-25 121.7 353 33.1
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 1.9e-25 120.9 367 34.9
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 3.2e-25 120.2 354 32.5
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 3.2e-25 120.2 362 32.9
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 3.2e-25 120.2 367 33.2
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 1.2e-24 118.2 421 29.9
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 1.6e-24 117.9 376 33.2
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.1e-24 117.5 362 32.6
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 2.7e-24 117.1 353 34.3
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 4.6e-24 116.3 397 31.7
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 4.6e-24 116.3 351 34.2
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.8e-23 114.4 396 31.3
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 3.9e-23 113.2 349 32.4
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 5.1e-23 112.8 380 31.1
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 8.7e-23 112.1 349 32.7
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 1.1e-22 111.7 387 31.5
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 2.5e-22 110.5 348 32.8
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 5.6e-22 109.4 364 31.3
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.3e-21 108.2 372 32.8
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 2.4e-20 104.0 351 33.0
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 6.9e-20 102.4 355 33.0
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 6.9e-20 102.4 350 33.1
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 9.0e-20 102.1 359 32.6
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 9.0e-20 102.1 388 29.9
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 1.2e-19 101.7 384 29.4
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 1.5e-19 101.3 368 29.3
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 5.8e-19 99.4 364 29.4
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 5.8e-19 99.4 338 32.2
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 7.6e-19 99.0 347 31.1
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 2.2e-18 97.4 351 31.3
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 2.9e-18 97.1 356 32.9
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 2.9e-18 97.1 360 29.7
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 4.9e-18 96.3 381 30.2
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 6.5e-18 95.9 360 33.1
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 6.5e-18 95.9 346 31.8
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 8.4e-18 95.5 387 29.7
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 1.1e-17 95.1 363 32.5
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 1.9e-17 94.4 364 31.0
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 1.9e-17 94.4 361 32.4
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.9e-17 94.4 285 31.9
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 2.5e-17 94.0 361 30.5
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 2.5e-17 94.0 368 26.6
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 9.3e-17 92.0 351 31.1
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 3.5e-16 90.1 353 30.6
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 7.9e-16 89.0 383 27.9
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 2.3e-15 87.4 357 30.3
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 3.0e-15 87.0 357 31.9
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 3.9e-15 86.7 377 29.2
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 6.7e-15 85.9 368 30.2
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.1e-14 85.1 392 27.6
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 1.5e-14 84.7 384 28.1
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 1.9e-14 84.3 339 29.5
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 1.9e-14 84.3 351 31.1
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 2.5e-14 84.0 350 29.7
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 2.5e-14 84.0 344 31.4
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 3.3e-14 83.6 342 30.7
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 4.3e-14 83.2 351 28.5
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 1.3e-13 81.6 148 40.5
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 1.6e-13 81.3 380 26.6
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 1.6e-13 81.3 407 27.8
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 3.7e-13 80.1 310 31.0
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 8.2e-13 79.0 359 30.6
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 8.2e-13 79.0 355 30.7
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 8.2e-13 79.0 352 29.3
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 9.0e-12 75.5 104 43.3
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 4.5e-11 73.2 424 26.4
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 6.5e-10 69.3 81 54.3
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 8.5e-10 68.9 399 26.1
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.9e-09 67.8 241 29.9
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 3.2e-09 67.0 430 24.7
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 7.2e-09 65.9 218 32.6
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 2.1e-08 64.3 443 24.6
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 2.1e-08 64.3 351 28.2
vmacro17886 Vaccinium macrocarpon HOM05D006001 ORTHO05D006714 1.4e-07 61.6 61 54.1
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 2.3e-07 60.8 70 51.4
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 3.0e-07 60.5 351 27.4
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 3.9e-07 60.1 368 27.7
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 5.1e-07 59.7 441 24.5
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 6.7e-07 59.3 71 53.5
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 6.7e-07 59.3 109 39.4
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 1.5e-06 58.2 437 24.5
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 4.3e-06 56.6 226 29.2


User provided reference genes

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