Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 0.0e+00 1614.4 853 100.0
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 0.0e+00 1580.8 853 98.0
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 0.0e+00 1123.6 798 72.3
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 0.0e+00 1094.7 798 71.2
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 0.0e+00 1093.6 798 70.2
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 0.0e+00 1090.9 795 70.6
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 0.0e+00 1075.8 785 71.0
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.1e-295 1020.0 795 65.8
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.5e-294 1016.1 798 66.4
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 7.1e-292 1007.3 812 64.7
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.7e-290 1002.7 796 66.0
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.1e-231 807.4 795 56.0
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 3.1e-202 709.5 808 48.5
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 3.4e-201 706.1 796 51.4
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 6.4e-200 701.8 623 60.4
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 7.0e-199 698.4 804 48.1
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 9.2e-199 698.0 804 48.1
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.4e-194 684.1 814 50.7
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 4.6e-190 669.1 813 48.7
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.0e-189 667.9 806 47.5
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 3.0e-189 666.4 810 48.4
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 7.3e-188 661.8 811 48.3
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 3.4e-185 652.9 661 53.9
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 4.4e-185 652.5 818 49.5
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 3.7e-184 649.4 794 46.9
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.6e-182 644.0 825 47.3
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 3.5e-182 642.9 804 47.0
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 4.6e-182 642.5 812 47.4
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 5.6e-180 635.6 781 47.2
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 6.2e-179 632.1 811 47.1
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 4.4e-177 625.9 795 45.9
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 2.2e-176 623.6 805 47.6
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.0e-173 614.8 809 46.7
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.4e-167 594.3 915 40.9
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 7.1e-167 592.0 799 43.8
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 9.6e-164 581.6 799 43.1
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.1e-163 580.5 812 43.2
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 8.1e-163 578.6 998 38.7
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 6.9e-162 575.5 962 39.5
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.0e-161 573.9 814 41.9
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 7.6e-161 572.0 836 41.1
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 7.6e-161 572.0 906 40.5
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 7.6e-161 572.0 820 43.3
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 8.4e-160 568.5 796 45.1
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 2.4e-159 567.0 945 39.5
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 6.7e-157 558.9 515 59.4
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 2.1e-155 553.9 890 41.0
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 9.0e-154 548.5 800 43.1
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 2.2e-152 543.9 810 44.2
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.9e-151 540.8 823 42.4
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 2.3e-149 533.9 816 41.1
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 6.7e-149 532.3 753 43.4
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 8.7e-149 531.9 792 42.9
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 7.4e-148 528.9 951 37.7
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 3.1e-146 523.5 796 40.1
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.5e-145 521.2 807 40.8
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 8.4e-144 515.4 799 40.6
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.3e-139 501.5 800 39.8
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.6e-139 501.1 790 39.6
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.6e-139 501.1 805 40.2
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 9.0e-138 495.4 568 48.9
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.1e-134 484.2 768 41.4
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 4.6e-134 483.0 815 38.8
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 7.9e-134 482.3 792 40.5
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 3.9e-133 479.9 808 39.1
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 3.9e-133 479.9 810 37.9
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 6.7e-133 479.2 842 36.8
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 6.7e-133 479.2 821 37.3
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 6.7e-133 479.2 834 38.7
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 8.8e-133 478.8 813 38.4
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.5e-132 478.0 811 37.9
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.5e-132 478.0 815 37.3
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.0e-132 477.6 794 39.0
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 7.4e-132 475.7 803 38.6
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 9.7e-132 475.3 811 39.0
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 3.7e-131 473.4 816 39.2
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.1e-130 471.9 665 43.0
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.9e-130 469.2 796 39.2
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.0e-129 467.6 843 36.7
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 5.0e-128 463.0 810 37.7
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 6.5e-128 462.6 785 41.3
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 8.5e-128 462.2 812 38.5
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.5e-127 460.7 746 41.3
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.7e-126 457.2 843 37.5
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 1.1e-122 445.3 820 37.3
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.2e-121 441.8 845 37.5
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.5e-119 434.1 793 37.1
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 6.1e-118 429.5 797 36.6
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.0e-117 428.7 807 37.1
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.5e-116 424.9 778 36.4
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 5.0e-112 409.8 880 32.6
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 6.8e-109 399.4 768 36.1
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 1.5e-108 398.3 852 34.7
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.4e-106 391.0 658 40.0
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.7e-105 387.5 804 35.1
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 5.9e-105 386.3 715 37.5
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 7.7e-105 386.0 794 35.8
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 2.2e-104 384.4 822 35.3
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 3.6e-102 377.1 714 37.7
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.3e-99 368.6 797 33.9
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.1e-94 351.3 568 40.7
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 8.0e-94 349.4 494 43.5
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.3e-88 332.0 493 43.8
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 3.3e-79 300.8 449 41.0
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.3e-79 300.4 508 39.0
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 4.3e-79 300.4 856 30.8
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 7.3e-79 299.7 453 41.3
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 7.3e-79 299.7 458 41.0
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.6e-78 298.5 481 39.3
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 2.1e-78 298.1 546 36.4
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 3.6e-78 297.4 449 39.6
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 8.9e-77 292.7 459 38.8
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.4e-76 290.8 452 38.3
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.7e-75 287.3 690 34.6
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 2.4e-74 284.6 504 38.7
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 5.4e-74 283.5 471 37.6
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 5.4e-74 283.5 471 37.6
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.2e-73 282.3 542 37.6
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 2.3e-72 278.1 471 38.2
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.3e-71 274.2 465 39.4
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 3.3e-71 274.2 471 37.2
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 2.1e-70 271.6 471 37.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 4.4e-68 263.8 645 32.1
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 1.6e-65 255.4 796 28.5
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.7e-64 251.9 464 39.0
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.3e-64 251.5 769 32.5
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 8.6e-64 249.6 809 27.7
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 5.6e-63 246.9 483 35.4
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 5.6e-63 246.9 483 35.4
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.7e-62 243.8 648 31.6
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.4e-61 242.3 659 31.3
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.0e-60 238.4 820 29.1
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.6e-60 238.0 423 37.4
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 5.8e-60 236.9 504 34.5
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.6e-57 228.8 382 39.0
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.6e-54 218.8 757 28.8
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.1e-53 214.5 363 38.6
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.5e-52 212.2 790 27.2
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.2e-50 204.5 452 32.3
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.3e-48 198.4 192 56.2
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 9.9e-44 183.0 502 30.3
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 3.8e-43 181.0 221 47.5
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.4e-42 178.3 272 42.6
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 2.4e-42 178.3 543 31.3
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 1.3e-38 166.0 619 28.1
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.0e-36 158.7 822 24.9
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 1.4e-29 136.0 498 24.7
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 4.1e-29 134.4 105 56.2
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.8e-24 119.0 360 32.8
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 2.3e-24 118.6 103 50.5
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 3.0e-24 118.2 350 33.4
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.7e-22 111.3 104 51.9
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 7.7e-20 103.6 151 35.8
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.9e-19 101.7 93 57.0
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 5.0e-19 100.9 723 22.8
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.4e-13 82.0 85 41.2
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 6.9e-13 80.5 81 53.1
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 7.9e-09 67.0 99 32.3
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.8e-08 65.9 72 41.7
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 2.0e-07 62.4 50 58.0
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 3.3e-07 61.6 56 51.8
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 9.7e-07 60.1 52 59.6
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-06 57.8 92 30.4


User provided reference genes

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