Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.6e-219 764.6 386 100.0
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 4.7e-211 737.6 386 97.4
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.0e-177 625.9 385 84.4
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.3e-176 623.2 384 85.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 1.3e-171 606.7 371 83.6
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 2.8e-171 605.5 385 81.3
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.8e-170 602.8 386 81.9
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 2.4e-170 602.4 371 82.2
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 4.1e-170 601.7 368 84.0
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.3e-165 585.9 366 81.1
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 3.8e-160 568.5 357 80.4
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.8e-160 568.5 363 80.2
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 2.6e-156 555.8 359 79.1
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 4.4e-156 555.1 359 78.8
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.8e-155 552.4 359 78.6
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 8.2e-155 550.8 358 78.2
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.1e-154 550.4 358 77.7
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 4.1e-154 548.5 358 78.2
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 5.3e-154 548.1 359 78.8
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 9.1e-154 547.4 356 76.4
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.2e-153 547.0 358 77.7
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.2e-153 547.0 359 78.6
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 4.5e-153 545.0 358 76.8
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 4.5e-153 545.0 358 76.5
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.0e-152 543.9 359 76.6
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 6.5e-152 541.2 358 76.3
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 2.5e-151 539.3 358 76.0
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.5e-151 539.3 358 76.0
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.2e-151 538.9 358 75.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.2e-150 537.0 358 76.0
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.7e-150 535.0 356 76.7
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 6.1e-150 534.6 356 76.4
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.8e-149 533.1 358 74.6
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.3e-149 532.7 356 76.4
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 3.0e-149 532.3 359 76.3
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.2e-149 531.6 358 74.6
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 8.8e-149 530.8 381 71.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-148 530.4 358 74.6
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.6e-148 529.3 358 74.0
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 5.7e-148 528.1 357 75.6
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 9.7e-148 527.3 357 75.4
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.7e-147 526.6 358 74.0
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.8e-147 525.8 330 80.6
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 4.8e-147 525.0 357 73.4
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 5.3e-146 521.5 363 73.3
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 3.5e-145 518.8 354 74.3
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 4.5e-145 518.5 357 73.1
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 7.7e-145 517.7 357 73.4
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.3e-144 516.9 358 73.2
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.7e-144 516.5 406 66.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.7e-144 516.5 340 78.5
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.7e-144 516.5 386 69.9
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.9e-144 515.8 360 73.3
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 5.0e-144 515.0 361 72.0
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.0e-144 515.0 357 73.4
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.5e-143 512.7 359 74.4
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.2e-143 512.3 357 72.5
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 4.2e-143 511.9 357 72.0
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 5.5e-143 511.5 357 72.5
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 5.5e-143 511.5 330 77.6
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.2e-143 511.1 358 71.5
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 7.2e-143 511.1 363 73.0
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 2.1e-142 509.6 374 70.6
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 6.1e-142 508.1 371 70.9
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 8.0e-142 507.7 357 72.3
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.8e-141 506.5 357 72.0
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.8e-141 506.5 357 71.1
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 4.0e-141 505.4 339 74.0
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 4.4e-140 501.9 339 75.5
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 9.7e-140 500.7 347 74.1
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 2.2e-139 499.6 358 72.1
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.4e-138 496.9 314 81.2
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.2e-137 493.8 335 74.3
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.0e-137 493.0 358 69.8
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 4.5e-137 491.9 363 70.5
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 7.7e-137 491.1 341 74.5
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 6.5e-136 488.0 357 70.3
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.9e-135 486.5 388 67.0
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 4.2e-135 485.3 334 71.3
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 5.5e-135 485.0 337 73.0
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 2.7e-134 482.6 332 72.6
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 5.2e-133 478.4 332 71.7
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.2e-132 477.2 358 67.9
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.5e-132 476.9 337 70.9
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.5e-132 476.9 365 68.2
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 2.2e-131 473.0 334 70.1
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 4.8e-131 471.9 359 69.1
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 6.3e-131 471.5 357 69.2
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 8.3e-131 471.1 355 69.3
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.1e-130 470.7 349 69.6
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.8e-130 469.9 349 70.8
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.0e-129 466.5 371 64.7
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 3.5e-129 465.7 335 70.7
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 5.9e-129 464.9 353 67.4
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.0e-128 464.2 337 68.2
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 2.9e-128 462.6 338 70.7
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 2.9e-128 462.6 353 65.7
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.9e-128 462.6 266 86.8
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 3.8e-128 462.2 359 66.3
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.1e-127 460.7 340 68.8
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.1e-127 460.7 359 66.6
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.5e-127 460.3 345 67.8
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.9e-127 459.9 359 68.2
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.2e-127 458.8 338 69.5
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 5.5e-127 458.4 359 66.0
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 5.5e-127 458.4 354 65.5
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 5.5e-127 458.4 351 65.8
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 7.2e-127 458.0 354 65.5
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 7.2e-127 458.0 342 67.0
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 9.5e-127 457.6 352 65.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 9.5e-127 457.6 331 69.2
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.2e-126 457.2 361 64.5
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.8e-126 456.1 355 66.8
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 4.7e-126 455.3 264 84.8
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.8e-125 453.4 342 67.0
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 2.3e-125 453.0 339 69.0
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 2.3e-125 453.0 368 64.1
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 4.0e-125 452.2 342 67.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 4.4e-124 448.7 336 67.9
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.5e-124 448.0 337 67.7
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 3.7e-123 445.7 339 67.3
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 4.9e-123 445.3 357 64.1
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.2e-121 440.7 358 64.2
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.6e-121 440.3 321 70.1
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.3e-120 437.2 336 66.4
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 8.6e-120 434.5 314 70.1
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 5.2e-117 425.2 286 78.3
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 8.9e-117 424.5 356 62.4
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 5.7e-116 421.8 296 74.0
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 7.0e-114 414.8 541 45.5
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.8e-101 373.6 354 57.6
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 9.9e-100 367.9 359 55.2
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 2.9e-99 366.3 231 77.1
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.6e-94 350.5 344 53.2
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 2.4e-90 336.7 279 63.8
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 6.0e-89 332.0 250 66.8
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 5.1e-88 328.9 296 57.1
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.1e-86 323.6 241 69.7
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.2e-85 318.9 213 76.1
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.3e-83 314.3 267 62.5
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 2.1e-81 307.0 202 75.2
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 8.7e-80 301.6 245 64.1
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 8.4e-75 285.0 163 85.9
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.4e-74 282.3 198 76.3
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 9.3e-66 255.0 398 39.9
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.0e-60 237.3 197 62.9
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.4e-58 231.1 197 62.9
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 9.3e-58 228.4 211 56.9
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.7e-57 226.9 164 68.3
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.0e-56 224.9 161 67.7
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.1e-55 221.5 193 61.1
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 2.5e-50 203.8 155 68.4
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.0e-48 198.4 281 44.1
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 6.9e-45 185.7 336 38.4
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 1.7e-38 164.5 113 72.6
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.2e-28 131.7 381 30.7
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 5.0e-27 126.3 274 31.4
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.5e-26 124.0 328 31.7
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 2.5e-26 124.0 71 84.5
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.1e-25 120.9 165 45.5
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.1e-21 108.6 215 34.4
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.7e-19 101.3 62 74.2
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.9e-18 97.8 60 83.3
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.5e-18 97.4 63 68.3
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.5e-18 96.3 57 78.9
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.1e-13 82.0 99 46.5
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 1.8e-13 81.3 67 65.7
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 2.9e-11 73.9 94 43.6
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.5e-10 70.9 60 61.7
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 4.4e-07 60.1 35 74.3


User provided reference genes

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