Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 8.0e-285 983.0 475 100.0
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 8.0e-277 956.4 475 97.5
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 4.8e-213 744.6 480 77.3
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 2.7e-208 728.8 471 76.4
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 4.5e-203 711.4 525 67.4
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 4.6e-200 701.4 476 73.5
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 1.3e-186 656.8 473 68.1
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 1.6e-184 649.8 472 66.3
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 8.8e-183 644.0 473 66.0
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 2.6e-182 642.5 478 67.2
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 2.8e-181 639.0 475 66.7
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 6.9e-180 634.4 474 63.9
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 3.9e-175 618.6 478 65.3
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 9.7e-174 614.0 473 63.4
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 2.2e-173 612.8 472 63.6
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 6.3e-173 611.3 473 63.4
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 4.1e-172 608.6 472 63.1
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 4.5e-171 605.1 472 63.3
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 4.5e-171 605.1 484 61.6
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 5.9e-171 604.7 472 62.5
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 1.1e-169 600.5 469 62.5
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 3.2e-169 599.0 471 62.2
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 1.2e-168 597.0 475 61.3
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 2.1e-168 596.3 470 62.8
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 1.4e-167 593.6 473 61.9
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 2.3e-167 592.8 473 61.7
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 6.7e-167 591.3 473 61.5
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 1.4e-164 583.6 478 61.1
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 1.5e-161 573.5 479 59.9
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 1.6e-160 570.1 461 61.6
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 1.4e-159 567.0 497 58.4
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 4.0e-159 565.5 481 57.8
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 1.5e-158 563.5 481 57.0
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 9.8e-158 560.8 471 59.2
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 4.8e-157 558.5 485 60.8
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.8e-156 556.6 488 58.4
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 1.6e-155 553.5 471 58.0
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 6.5e-154 548.1 472 57.4
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 4.2e-153 545.4 472 58.3
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 1.6e-152 543.5 477 57.2
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 1.4e-151 540.4 462 56.7
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 2.3e-151 539.7 473 56.9
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 6.8e-151 538.1 474 57.0
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 2.0e-150 536.6 485 55.9
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 7.5e-150 534.6 478 57.7
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.3e-149 533.9 455 58.2
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 4.9e-149 531.9 529 52.6
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 2.8e-144 516.2 481 53.4
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 1.8e-143 513.5 565 50.8
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 1.8e-143 513.5 376 66.0
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 4.4e-142 508.8 471 54.8
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 2.9e-141 506.1 385 63.4
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 2.4e-140 503.1 484 51.7
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 3.9e-138 495.7 497 52.9
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 1.6e-136 490.3 388 62.9
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 8.0e-136 488.0 477 52.2
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 2.3e-135 486.5 478 52.1
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 5.2e-135 485.3 474 51.5
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 8.9e-135 484.6 480 50.8
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 2.9e-133 479.6 479 51.6
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.4e-132 477.2 523 48.0
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 1.4e-132 477.2 475 51.4
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 2.4e-132 476.5 509 50.3
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 3.2e-132 476.1 476 51.5
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 2.7e-131 473.0 477 51.4
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 2.3e-130 469.9 472 49.8
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 3.9e-130 469.2 485 50.9
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 3.3e-129 466.1 474 50.2
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 3.3e-129 466.1 482 50.0
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 5.6e-129 465.3 388 60.8
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 9.5e-129 464.5 479 49.9
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 6.2e-128 461.8 471 51.6
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 1.8e-127 460.3 487 50.7
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 3.1e-127 459.5 381 61.2
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 8.9e-127 458.0 518 47.5
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 1.2e-126 457.6 524 47.3
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 1.6e-123 447.2 434 55.3
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 1.1e-121 441.0 464 50.4
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 8.1e-120 434.9 475 49.5
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 3.1e-119 433.0 467 49.7
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.2e-117 426.8 466 49.1
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 3.8e-117 426.0 509 47.3
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 3.0e-114 416.4 509 46.4
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 1.6e-107 394.0 325 56.9
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 3.0e-106 389.8 489 44.2
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 8.7e-106 388.3 342 55.3
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 8.7e-106 388.3 482 45.2
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 1.5e-102 377.5 473 43.3
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 2.6e-102 376.7 327 61.5
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 9.0e-95 351.7 309 56.0
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 7.4e-89 332.0 256 62.1
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 4.8e-88 329.3 273 59.0
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.4e-87 327.8 288 56.9
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 1.4e-87 327.8 286 57.0
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 4.2e-84 316.2 493 34.9
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 5.7e-81 305.8 291 51.9
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 6.3e-80 302.4 293 54.6
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 2.7e-67 260.4 475 33.5
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 1.3e-64 251.5 207 58.0
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 7.7e-62 242.3 188 61.7
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 6.1e-59 232.6 186 61.3
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 8.0e-59 232.3 158 65.2
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 2.3e-58 230.7 187 59.9
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 9.7e-57 225.3 460 33.3
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 6.3e-56 222.6 225 53.8
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 5.0e-53 213.0 173 59.0
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 7.0e-47 192.6 161 57.1
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-33 148.7 357 28.9
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 2.2e-32 144.4 192 41.7
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 9.5e-28 129.0 131 51.1
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 3.5e-22 110.5 132 44.7
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 1.6e-19 101.7 290 30.0
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 1.4e-18 98.6 90 56.7
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 1.5e-17 95.1 90 53.3
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 3.2e-15 87.4 162 35.8
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 2.7e-14 84.3 135 35.6
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 2.3e-13 81.3 53 67.9
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 2.0e-09 68.2 99 41.4
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 1.7e-08 65.1 53 52.8
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 5.4e-07 60.1 46 60.9
QL01p005881 Quercus lobata HOM05D006389 ORTHO05D007863 4.6e-06 57.0 74 44.6


User provided reference genes

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