Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-94 350.1 235 100.0
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-94 350.1 235 100.0
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 5.1e-91 338.2 235 88.5
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 3.3e-66 255.8 194 93.8
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 4.8e-65 251.9 236 72.5
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.0e-58 229.9 234 72.2
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 9.7e-58 227.6 237 66.2
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.2e-57 226.5 236 62.3
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 2.8e-57 226.1 235 70.6
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 2.8e-57 226.1 235 70.6
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 4.8e-57 225.3 240 61.7
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 4.8e-57 225.3 127 92.9
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 4.8e-57 225.3 235 62.6
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 6.3e-57 224.9 238 60.1
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 2.4e-56 223.0 238 64.3
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 2.4e-56 223.0 240 66.2
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 3.1e-56 222.6 239 69.5
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 4.1e-56 222.2 239 64.9
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 5.3e-56 221.9 237 64.6
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 6.9e-56 221.5 235 68.9
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 9.1e-56 221.1 235 61.7
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 9.1e-56 221.1 235 61.3
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.5e-55 220.3 235 61.3
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 2.6e-55 219.5 234 74.4
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 3.4e-55 219.2 236 58.9
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.4e-55 219.2 235 56.6
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 5.9e-55 218.4 236 60.6
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 7.7e-55 218.0 235 69.4
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 7.7e-55 218.0 126 89.7
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.0e-54 217.6 238 67.6
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 1.0e-54 217.6 235 74.0
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.7e-54 216.9 236 60.2
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.7e-54 216.9 236 64.4
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 2.2e-54 216.5 245 59.6
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 2.2e-54 216.5 235 60.4
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.9e-54 216.1 234 70.9
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 3.8e-54 215.7 127 88.2
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 3.8e-54 215.7 236 63.1
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 5.0e-54 215.3 235 58.7
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 5.0e-54 215.3 235 58.7
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 5.0e-54 215.3 240 72.5
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.0e-54 215.3 235 63.8
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 5.0e-54 215.3 234 61.1
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 5.0e-54 215.3 237 68.8
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 1.4e-53 213.8 236 57.6
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.4e-53 213.8 235 58.7
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.4e-53 213.8 239 62.3
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.9e-53 213.4 238 60.5
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.2e-53 212.6 235 60.4
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.2e-53 212.6 235 58.7
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 5.5e-53 211.8 125 87.2
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 7.2e-53 211.5 127 87.4
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 7.2e-53 211.5 235 57.4
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 9.4e-53 211.1 235 57.0
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.2e-52 210.7 240 60.0
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.6e-52 210.3 126 87.3
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.6e-52 210.3 235 60.4
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 1.6e-52 210.3 235 66.8
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 2.1e-52 209.9 235 71.1
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 2.1e-52 209.9 235 69.8
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.7e-52 209.5 235 64.3
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 2.7e-52 209.5 235 64.3
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 3.6e-52 209.1 235 58.3
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.6e-52 209.1 233 70.0
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 3.6e-52 209.1 231 67.1
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.0e-51 207.6 233 61.8
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.0e-51 207.6 235 59.6
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.4e-51 207.2 235 56.6
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.8e-51 206.8 235 57.0
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 1.8e-51 206.8 236 58.9
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.8e-51 206.8 235 69.8
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 2.3e-51 206.5 235 64.3
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 3.0e-51 206.1 235 69.4
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 3.0e-51 206.1 234 58.5
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 3.0e-51 206.1 235 58.3
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.1e-50 204.1 255 52.5
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 2.6e-50 203.0 122 86.1
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 2.6e-50 203.0 232 67.7
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 3.3e-50 202.6 240 55.0
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 7.4e-50 201.4 126 84.1
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 9.7e-50 201.1 127 81.1
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 2.2e-49 199.9 235 57.9
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.2e-49 199.9 126 80.2
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 4.8e-49 198.7 255 65.9
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.8e-48 196.8 236 55.5
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 5.3e-48 195.3 235 53.6
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 9.1e-48 194.5 240 57.1
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 1.2e-47 194.1 271 62.7
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 4.5e-47 192.2 242 63.2
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.0e-46 191.0 127 78.7
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.0e-46 191.0 215 67.4
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.3e-46 190.7 232 63.8
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.7e-46 190.3 223 56.5
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 2.9e-46 189.5 217 55.8
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 1.5e-45 187.2 126 75.4
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.2e-45 186.0 127 74.0
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.2e-45 186.0 127 74.0
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 4.2e-45 185.7 232 59.5
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 9.4e-45 184.5 124 77.4
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-44 184.1 127 72.4
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.6e-44 183.7 126 73.8
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.6e-44 183.7 127 72.4
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 3.6e-44 182.6 235 54.0
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 3.6e-44 182.6 235 54.0
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 4.7e-44 182.2 127 71.7
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.8e-43 180.3 127 70.9
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 4.0e-43 179.1 223 53.8
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 5.2e-43 178.7 125 71.2
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 6.7e-43 178.3 125 70.4
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 6.7e-43 178.3 125 70.4
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 2.0e-42 176.8 125 70.4
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 2.6e-42 176.4 130 74.6
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 5.7e-42 175.3 106 86.8
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 6.3e-41 171.8 202 52.0
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 5.9e-39 165.2 241 48.5
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 5.5e-37 158.7 125 68.0
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 9.4e-37 157.9 101 81.2
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 2.1e-36 156.8 125 62.4
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.0e-36 154.8 209 66.5
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.4e-35 154.1 125 61.6
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 6.8e-35 151.8 95 78.9
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.2e-34 151.0 238 43.7
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.6e-34 149.8 192 56.8
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 3.4e-34 149.4 128 66.4
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 7.5e-34 148.3 239 48.5
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.7e-33 147.1 109 74.3
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 8.3e-33 144.8 126 59.5
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-32 144.1 127 61.4
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 1.8e-32 143.7 202 53.0
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 2.4e-32 143.3 212 49.1
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 2.4e-32 143.3 127 62.2
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.2e-31 141.0 125 60.8
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 2.0e-31 140.2 220 43.6
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 2.0e-31 140.2 220 43.6
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 3.5e-31 139.4 130 57.7
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 5.9e-31 138.7 131 60.3
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-30 137.5 133 57.9
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 3.8e-30 136.0 129 58.9
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 6.5e-30 135.2 193 58.0
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 4.2e-29 132.5 115 65.2
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 6.1e-28 128.6 128 55.5
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 2.3e-27 126.7 127 57.5
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 9.8e-26 121.3 103 60.2
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.1e-24 115.9 82 76.8
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 2.9e-22 109.8 165 50.9
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 7.3e-21 105.1 160 50.0
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 2.8e-20 103.2 247 41.3
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.2e-18 97.8 159 49.7
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-17 94.0 79 63.3
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 2.4e-16 90.1 74 60.8
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 4.3e-13 79.3 48 77.1
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 4.7e-12 75.9 65 58.5
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.4e-11 74.3 88 43.2
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 2.3e-11 73.6 41 82.9
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 2.0e-10 70.5 37 89.2
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 9.8e-10 68.2 51 66.7
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 4.9e-09 65.9 130 57.7
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 8.3e-09 65.1 103 35.0
arahy.Tifrunner.gnm1.ann1.W2JFNW Arachis hypogaea HOM05D004341 ORTHO05D005075 1.1e-08 64.7 34 88.2
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 1.9e-08 63.9 94 43.6
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 5.4e-08 62.4 130 54.6
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 2.3e-06 57.0 46 63.0


User provided reference genes

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